0.036872 0.000000 0.000000 0.000000 0.021167 0.000000 0.000000 0.000000 0.018569 0.000000 0.000000 0.000000 Hoover, D.M. Lubkowski, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 27.121 47.243 53.853 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Br -1 79.904 BROMIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking K 1 39.098 POTASSIUM ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 276 39021 39026 10.1074/jbc.M103830200 11486002 The structure of human beta-defensin-1: new insights into structural properties of beta-defensins. 2001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100 1 MIRRORS CCD 2001-03-04 ADSC SI CRYSTAL SINGLE WAVELENGTH M x-ray 1 0.92021 1.0 0.920 1.0 X9B NSLS 0.92021 0.920 SYNCHROTRON NSLS BEAMLINE X9B 3940.598 Beta-defensin 1 2 syn polymer 96.063 SULFATE ION 2 syn non-polymer 79.904 BROMIDE ION 6 syn non-polymer 39.098 POTASSIUM ION 1 syn non-polymer 18.015 water 176 nat water HBD-1 no no DHYNCVSSGGQCLYSACPIFTKIQGTCYRGKAKCCK DHYNCVSSGGQCLYSACPIFTKIQGTCYRGKAKCCK A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 1.75 29.8 ANOMALOUS DATA USED FOR REFINEMENT VAPOR DIFFUSION, HANGING DROP 4.6 PEG 4000, ammonium sulfate, sodium acetate, potassium bromide, glycerol, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 285K 285 repository Initial release Version format compliance Atomic model Version format compliance 1 0 2001-10-24 1 1 2008-04-27 1 2 2011-07-13 1IJU is HUMAN BETA-DEFENSIN-1 RCSB Y RCSB 2001-04-30 REL REL SO4 SULFATE ION BR BROMIDE ION K POTASSIUM ION HOH water THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PEPTIDE OCCURS NATURALLY IN HUMANS (HOMO SAPIENS). sample SO4 102 2 SO4 SO4 102 A BR1 105 3 BR BR 105 A BR1 106 3 BR BR 106 A BR1 108 3 BR BR 108 A SO4 101 2 SO4 SO4 101 B BR1 103 3 BR BR 103 B BR1 104 3 BR BR 104 B BR1 107 3 BR BR 107 B K1 109 4 K K 109 B HOH 205 5 HOH HOH 205 A HOH 207 5 HOH HOH 207 A HOH 208 5 HOH HOH 208 A HOH 209 5 HOH HOH 209 A HOH 210 5 HOH HOH 210 A HOH 214 5 HOH HOH 214 A HOH 215 5 HOH HOH 215 A HOH 216 5 HOH HOH 216 A HOH 217 5 HOH HOH 217 A HOH 223 5 HOH HOH 223 A HOH 225 5 HOH HOH 225 A HOH 227 5 HOH HOH 227 A HOH 228 5 HOH HOH 228 A HOH 229 5 HOH HOH 229 A HOH 231 5 HOH HOH 231 A HOH 232 5 HOH HOH 232 A HOH 233 5 HOH HOH 233 A HOH 235 5 HOH HOH 235 A HOH 236 5 HOH HOH 236 A HOH 237 5 HOH HOH 237 A HOH 238 5 HOH HOH 238 A HOH 239 5 HOH HOH 239 A HOH 240 5 HOH HOH 240 A HOH 243 5 HOH HOH 243 A HOH 244 5 HOH HOH 244 A HOH 245 5 HOH HOH 245 A HOH 247 5 HOH HOH 247 A HOH 248 5 HOH HOH 248 A HOH 251 5 HOH HOH 251 A HOH 252 5 HOH HOH 252 A HOH 254 5 HOH HOH 254 A HOH 259 5 HOH HOH 259 A HOH 260 5 HOH HOH 260 A HOH 262 5 HOH HOH 262 A HOH 263 5 HOH HOH 263 A HOH 264 5 HOH HOH 264 A HOH 265 5 HOH HOH 265 A HOH 266 5 HOH HOH 266 A HOH 267 5 HOH HOH 267 A HOH 276 5 HOH HOH 276 A HOH 277 5 HOH HOH 277 A HOH 280 5 HOH HOH 280 A HOH 281 5 HOH HOH 281 A HOH 282 5 HOH HOH 282 A HOH 283 5 HOH HOH 283 A HOH 284 5 HOH HOH 284 A HOH 286 5 HOH HOH 286 A HOH 287 5 HOH HOH 287 A HOH 288 5 HOH HOH 288 A HOH 291 5 HOH HOH 291 A HOH 292 5 HOH HOH 292 A HOH 293 5 HOH HOH 293 A HOH 297 5 HOH HOH 297 A HOH 298 5 HOH HOH 298 A HOH 302 5 HOH HOH 302 A HOH 304 5 HOH HOH 304 A HOH 305 5 HOH HOH 305 A HOH 306 5 HOH HOH 306 A HOH 307 5 HOH HOH 307 A HOH 308 5 HOH HOH 308 A HOH 310 5 HOH HOH 310 A HOH 311 5 HOH HOH 311 A HOH 312 5 HOH HOH 312 A HOH 313 5 HOH HOH 313 A HOH 314 5 HOH HOH 314 A HOH 315 5 HOH HOH 315 A HOH 318 5 HOH HOH 318 A HOH 319 5 HOH HOH 319 A HOH 320 5 HOH HOH 320 A HOH 321 5 HOH HOH 321 A HOH 322 5 HOH HOH 322 A HOH 323 5 HOH HOH 323 A HOH 325 5 HOH HOH 325 A HOH 326 5 HOH HOH 326 A HOH 329 5 HOH HOH 329 A HOH 330 5 HOH HOH 330 A HOH 331 5 HOH HOH 331 A HOH 332 5 HOH HOH 332 A HOH 337 5 HOH HOH 337 A HOH 342 5 HOH HOH 342 A HOH 343 5 HOH HOH 343 A HOH 344 5 HOH HOH 344 A HOH 345 5 HOH HOH 345 A HOH 346 5 HOH HOH 346 A HOH 351 5 HOH HOH 351 A HOH 352 5 HOH HOH 352 A HOH 353 5 HOH HOH 353 A HOH 354 5 HOH HOH 354 A HOH 355 5 HOH HOH 355 A HOH 356 5 HOH HOH 356 A HOH 357 5 HOH HOH 357 A HOH 358 5 HOH HOH 358 A HOH 359 5 HOH HOH 359 A HOH 360 5 HOH HOH 360 A HOH 361 5 HOH HOH 361 A HOH 364 5 HOH HOH 364 A HOH 370 5 HOH HOH 370 A HOH 371 5 HOH HOH 371 A HOH 372 5 HOH HOH 372 A HOH 375 5 HOH HOH 375 A HOH 201 5 HOH HOH 201 B HOH 202 5 HOH HOH 202 B HOH 203 5 HOH HOH 203 B HOH 204 5 HOH HOH 204 B HOH 206 5 HOH HOH 206 B HOH 211 5 HOH HOH 211 B HOH 212 5 HOH HOH 212 B HOH 213 5 HOH HOH 213 B HOH 218 5 HOH HOH 218 B HOH 219 5 HOH HOH 219 B HOH 220 5 HOH HOH 220 B HOH 221 5 HOH HOH 221 B HOH 222 5 HOH HOH 222 B HOH 224 5 HOH HOH 224 B HOH 226 5 HOH HOH 226 B HOH 230 5 HOH HOH 230 B HOH 234 5 HOH HOH 234 B HOH 241 5 HOH HOH 241 B HOH 242 5 HOH HOH 242 B HOH 246 5 HOH HOH 246 B HOH 249 5 HOH HOH 249 B HOH 250 5 HOH HOH 250 B HOH 253 5 HOH HOH 253 B HOH 255 5 HOH HOH 255 B HOH 256 5 HOH HOH 256 B HOH 257 5 HOH HOH 257 B HOH 258 5 HOH HOH 258 B HOH 261 5 HOH HOH 261 B HOH 268 5 HOH HOH 268 B HOH 269 5 HOH HOH 269 B HOH 270 5 HOH HOH 270 B HOH 271 5 HOH HOH 271 B HOH 272 5 HOH HOH 272 B HOH 273 5 HOH HOH 273 B HOH 274 5 HOH HOH 274 B HOH 275 5 HOH HOH 275 B HOH 278 5 HOH HOH 278 B HOH 279 5 HOH HOH 279 B HOH 285 5 HOH HOH 285 B HOH 289 5 HOH HOH 289 B HOH 290 5 HOH HOH 290 B HOH 294 5 HOH HOH 294 B HOH 295 5 HOH HOH 295 B HOH 296 5 HOH HOH 296 B HOH 299 5 HOH HOH 299 B HOH 300 5 HOH HOH 300 B HOH 301 5 HOH HOH 301 B HOH 303 5 HOH HOH 303 B HOH 309 5 HOH HOH 309 B HOH 316 5 HOH HOH 316 B HOH 317 5 HOH HOH 317 B HOH 324 5 HOH HOH 324 B HOH 327 5 HOH HOH 327 B HOH 328 5 HOH HOH 328 B HOH 333 5 HOH HOH 333 B HOH 334 5 HOH HOH 334 B HOH 335 5 HOH HOH 335 B HOH 336 5 HOH HOH 336 B HOH 338 5 HOH HOH 338 B HOH 339 5 HOH HOH 339 B HOH 340 5 HOH HOH 340 B HOH 341 5 HOH HOH 341 B HOH 347 5 HOH HOH 347 B HOH 348 5 HOH HOH 348 B HOH 349 5 HOH HOH 349 B HOH 350 5 HOH HOH 350 B HOH 362 5 HOH HOH 362 B HOH 363 5 HOH HOH 363 B HOH 365 5 HOH HOH 365 B HOH 366 5 HOH HOH 366 B HOH 367 5 HOH HOH 367 B HOH 368 5 HOH HOH 368 B HOH 369 5 HOH HOH 369 B HOH 373 5 HOH HOH 373 B HOH 374 5 HOH HOH 374 B HOH 376 5 HOH HOH 376 B ASP 1 n 1 ASP 1 A HIS 2 n 2 HIS 2 A TYR 3 n 3 TYR 3 A ASN 4 n 4 ASN 4 A CYS 5 n 5 CYS 5 A VAL 6 n 6 VAL 6 A SER 7 n 7 SER 7 A SER 8 n 8 SER 8 A GLY 9 n 9 GLY 9 A GLY 10 n 10 GLY 10 A GLN 11 n 11 GLN 11 A CYS 12 n 12 CYS 12 A LEU 13 n 13 LEU 13 A TYR 14 n 14 TYR 14 A SER 15 n 15 SER 15 A ALA 16 n 16 ALA 16 A CYS 17 n 17 CYS 17 A PRO 18 n 18 PRO 18 A ILE 19 n 19 ILE 19 A PHE 20 n 20 PHE 20 A THR 21 n 21 THR 21 A LYS 22 n 22 LYS 22 A ILE 23 n 23 ILE 23 A GLN 24 n 24 GLN 24 A GLY 25 n 25 GLY 25 A THR 26 n 26 THR 26 A CYS 27 n 27 CYS 27 A TYR 28 n 28 TYR 28 A ARG 29 n 29 ARG 29 A GLY 30 n 30 GLY 30 A LYS 31 n 31 LYS 31 A ALA 32 n 32 ALA 32 A LYS 33 n 33 LYS 33 A CYS 34 n 34 CYS 34 A CYS 35 n 35 CYS 35 A LYS 36 n 36 LYS 36 A ASP 1 n 1 ASP 1 B HIS 2 n 2 HIS 2 B TYR 3 n 3 TYR 3 B ASN 4 n 4 ASN 4 B CYS 5 n 5 CYS 5 B VAL 6 n 6 VAL 6 B SER 7 n 7 SER 7 B SER 8 n 8 SER 8 B GLY 9 n 9 GLY 9 B GLY 10 n 10 GLY 10 B GLN 11 n 11 GLN 11 B CYS 12 n 12 CYS 12 B LEU 13 n 13 LEU 13 B TYR 14 n 14 TYR 14 B SER 15 n 15 SER 15 B ALA 16 n 16 ALA 16 B CYS 17 n 17 CYS 17 B PRO 18 n 18 PRO 18 B ILE 19 n 19 ILE 19 B PHE 20 n 20 PHE 20 B THR 21 n 21 THR 21 B LYS 22 n 22 LYS 22 B ILE 23 n 23 ILE 23 B GLN 24 n 24 GLN 24 B GLY 25 n 25 GLY 25 B THR 26 n 26 THR 26 B CYS 27 n 27 CYS 27 B TYR 28 n 28 TYR 28 B ARG 29 n 29 ARG 29 B GLY 30 n 30 GLY 30 B LYS 31 n 31 LYS 31 B ALA 32 n 32 ALA 32 B LYS 33 n 33 LYS 33 B CYS 34 n 34 CYS 34 B CYS 35 n 35 CYS 35 B LYS 36 n 36 LYS 36 B 0.131 0.157 0.139 0.161 0.162 0.193 635 760 2.0 1.9 31736 author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric B SO4 101 G O2 SO4 1_555 B K 109 K K K 1_555 B SO4 101 G O3 SO4 1_555 44.5 B SO4 101 G O2 SO4 1_555 B K 109 K K K 1_555 B HOH 202 M O HOH 1_555 84.6 B SO4 101 G O3 SO4 1_555 B K 109 K K K 1_555 B HOH 202 M O HOH 1_555 51.0 B SO4 101 G O2 SO4 1_555 B K 109 K K K 1_555 B HOH 201 M O HOH 1_555 133.1 B SO4 101 G O3 SO4 1_555 B K 109 K K K 1_555 B HOH 201 M O HOH 1_555 92.1 B HOH 202 M O HOH 1_555 B K 109 K K K 1_555 B HOH 201 M O HOH 1_555 75.8 B SO4 101 G O2 SO4 1_555 B K 109 K K K 1_555 A HIS 2 A ND1 HIS 2 3_655 150.3 B SO4 101 G O3 SO4 1_555 B K 109 K K K 1_555 A HIS 2 A ND1 HIS 2 3_655 158.6 B HOH 202 M O HOH 1_555 B K 109 K K K 1_555 A HIS 2 A ND1 HIS 2 3_655 108.1 B HOH 201 M O HOH 1_555 B K 109 K K K 1_555 A HIS 2 A ND1 HIS 2 3_655 76.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 13 A O LEU 13 A N LYS 33 A N LYS 33 A O CYS 34 A O CYS 34 A N GLN 24 A N GLN 24 B O LEU 13 B O LEU 13 B N LYS 33 B N LYS 33 B O CYS 34 B O CYS 34 B N GLN 24 B N GLN 24 1 B B BR O BR HOH 104 290 0.84 1 B B BR O BR HOH 107 289 1.61 1 B B NE2 BR GLN BR 24 103 1.83 B 1 A A BR O BR HOH 106 330 1.97 1 B B BR O BR HOH 107 242 2.03 1 -4.81 0.60 121.00 116.19 B B B CB CG CD2 TYR TYR TYR 14 14 14 A A A N 1 3.80 0.60 121.00 124.80 B B B CB CG CD1 TYR TYR TYR 14 14 14 A A A N 1 -3.75 0.60 121.00 117.25 B B B CB CG CD1 TYR TYR TYR 14 14 14 B B B N 1 4.63 0.70 120.80 125.43 B B B CB CG CD2 PHE PHE PHE 20 20 20 N 1 4.38 0.50 120.30 124.68 B B B NE CZ NH1 ARG ARG ARG 29 29 29 N 1 A TYR 28 64.72 62.30 1 B PHE 20 75.57 -2.43 1 B GLN 24 A -149.22 36.06 1 B TYR 28 61.39 62.91 0.193 0.161 0.157 0.161 1.20 20.00 7167 76 3966 3890 9055 1. 100.0 RANDOM 1 FREE R 0.0 0.0 AB INITIO ENGH AND HUBER 536. 738. 1.20 20.00 176 735 17 0 542 0.01 0.03 0.00 0.028 0.07 0.08 0.03 0.00 0.06 0.09 10.0 1.2 25.0 1IJV 87673 40500 0.0 0.0 0.033 1 23.5 2.2 96.4 0.227 1.2 1.24 3.0 1 2.1 86.4 data reduction DENZO data scaling SCALEPACK model building SHELX phasing SHARP model building DM refinement SHELXL-97 phasing SHELX phasing DM beta-defensin 1 HUMAN BETA-DEFENSIN-1 1 N N 1 N N 2 N N 3 N N 3 N N 3 N N 2 N N 3 N N 3 N N 3 N N 4 N N 5 N N 5 N N A ASP 1 A ASP 1 HELX_P A SER 8 A SER 8 1 1 8 B ASP 1 B ASP 1 HELX_P B SER 8 B SER 8 1 2 8 disulf 2.043 A CYS 5 A SG CYS 5 1_555 A CYS 34 A SG CYS 34 1_555 disulf 2.049 A CYS 12 A SG CYS 12 1_555 A CYS 27 A SG CYS 27 1_555 disulf 2.048 A CYS 17 A SG CYS 17 1_555 A CYS 35 A SG CYS 35 1_555 disulf 2.056 B CYS 5 B SG CYS 5 1_555 B CYS 34 B SG CYS 34 1_555 disulf 2.054 B CYS 12 B SG CYS 12 1_555 B CYS 27 B SG CYS 27 1_555 disulf 2.055 B CYS 17 B SG CYS 17 1_555 B CYS 35 B SG CYS 35 1_555 metalc 2.685 B K 109 K K K 1_555 B SO4 101 G O2 SO4 1_555 metalc 3.424 B K 109 K K K 1_555 B SO4 101 G O3 SO4 1_555 metalc 2.793 B K 109 K K K 1_555 B HOH 202 M O HOH 1_555 metalc 3.159 B K 109 K K K 1_555 B HOH 201 M O HOH 1_555 metalc 2.699 B K 109 K K K 1_555 A HIS 2 A ND1 HIS 2 3_655 DEFENSIN DEFENSIN, HUMAN BETA-DEFENSIN-1, BETA-DEFENSIN BD01_HUMAN UNP 1 33 P60022 DHYNCVSSGGQCLYSACPIFTKIQGTCYRGKAKCCK 33 68 1IJV 1 36 P60022 A 1 1 36 33 68 1IJV 1 36 P60022 B 1 1 36 3 3 anti-parallel anti-parallel anti-parallel anti-parallel A GLN 11 A GLN 11 A LEU 13 A LEU 13 A ALA 32 A ALA 32 A CYS 35 A CYS 35 A ILE 23 A ILE 23 A CYS 27 A CYS 27 B GLN 11 B GLN 11 B LEU 13 B LEU 13 B ALA 32 B ALA 32 B CYS 35 B CYS 35 B ILE 23 B ILE 23 B CYS 27 B CYS 27 BINDING SITE FOR RESIDUE SO4 B 101 Software 10 BINDING SITE FOR RESIDUE SO4 A 102 Software 11 BINDING SITE FOR RESIDUE BR B 103 Software 4 BINDING SITE FOR RESIDUE BR B 104 Software 3 BINDING SITE FOR RESIDUE BR A 105 Software 2 BINDING SITE FOR RESIDUE BR A 106 Software 3 BINDING SITE FOR RESIDUE BR B 107 Software 6 BINDING SITE FOR RESIDUE BR A 108 Software 3 BINDING SITE FOR RESIDUE K B 109 Software 5 A TYR 3 A TYR 3 10 3_655 A HOH 209 L HOH 10 3_655 B ASP 1 B ASP 1 10 1_555 B HIS 2 B HIS 2 10 1_555 B CYS 27 B CYS 27 10 1_555 B TYR 28 B TYR 28 10 1_555 B ARG 29 B ARG 29 10 1_555 B K 109 K K 10 1_555 B HOH 202 M HOH 10 1_555 B HOH 204 M HOH 10 1_555 A ASP 1 A ASP 1 11 1_555 A HIS 2 A HIS 2 11 1_555 A CYS 27 A CYS 27 11 1_555 A TYR 28 A TYR 28 11 1_555 A ARG 29 A ARG 29 11 1_555 A HOH 205 L HOH 11 1_555 A HOH 209 L HOH 11 1_555 A HOH 281 L HOH 11 1_555 B TYR 3 B TYR 3 11 3_645 B HOH 201 M HOH 11 3_645 B HOH 202 M HOH 11 3_645 B ASP 1 B ASP 1 4 1_555 B ASN 4 B ASN 4 4 1_555 B GLN 24 B GLN 24 4 1_555 B HOH 341 M HOH 4 1_555 B ALA 16 B ALA 16 3 1_555 B CYS 17 B CYS 17 3 1_555 B HOH 290 M HOH 3 1_555 A CYS 12 A CYS 12 2 1_555 A HOH 235 L HOH 2 1_555 A CYS 17 A CYS 17 3 1_555 A HOH 330 L HOH 3 1_555 A HOH 346 L HOH 3 1_555 B HOH 211 M HOH 6 1_555 B HOH 219 M HOH 6 1_555 B HOH 242 M HOH 6 1_555 B HOH 258 M HOH 6 1_555 B HOH 289 M HOH 6 1_555 B HOH 350 M HOH 6 1_555 A ASP 1 A ASP 1 3 1_555 A ASN 4 A ASN 4 3 1_555 A GLY 25 A GLY 25 3 1_555 A HIS 2 A HIS 2 5 3_655 A TYR 3 A TYR 3 5 3_655 B HIS 2 B HIS 2 5 1_555 B SO4 101 G SO4 5 1_555 B HOH 202 M HOH 5 1_555 19 P 21 21 21