1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Huang, H.
Alexandrov, A.
Chen, X.
Barnes III, T.W.
Zhang, H.
Dutta, K.
Pascal, S.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
O
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
40
8055
8064
10.1021/bi010572b
11434774
Structure of an RNA hairpin from HRV-14.
2001
10.2210/pdb1ik1/pdb
pdb_00001ik1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
HRV-14 stem loop d hairpin
4447.691
5'-R(*GP*GP*UP*AP*CP*UP*AP*UP*GP*UP*AP*CP*CP*A)-3'
1
syn
polymer
no
no
GGUACUAUGUACCA
GGUACUAUGUACCA
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-5.777
1
19
A
1
A
13
-2.488
A_G1:C13_A
1
-9.169
-0.463
0.172
-0.128
-5.378
1
19
A
2
A
12
0.679
A_G2:C12_A
2
-20.752
-0.599
-0.119
-0.162
2.449
1
20
A
3
A
11
1.994
A_U3:A11_A
3
-26.688
-0.045
-0.203
-0.067
-1.067
1
20
A
4
A
10
-1.983
A_A4:U10_A
4
-16.004
0.070
0.301
-0.050
15.334
1
19
A
5
A
9
-3.510
A_C5:G9_A
5
-12.957
0.578
0.113
-0.170
2.370
29.831
A
A
1
2
19.315
A
A
13
12
3.137
9.763
0.071
-1.873
AA_G1G2:C12C13_AA
1
1.623
-3.211
28.176
-5.402
0.155
2.770
35.250
A
A
2
3
7.806
A
A
12
11
2.949
4.712
0.098
-1.201
AA_G2U3:A11C12_AA
2
1.897
-3.143
34.894
-2.597
0.086
1.605
38.128
A
A
3
4
36.302
A
A
11
10
3.076
22.285
-0.012
-1.608
AA_U3A4:U10A11_AA
3
-2.333
3.801
31.050
-4.706
-0.216
2.815
33.725
A
A
4
5
2.219
A
A
10
9
2.854
1.287
-0.251
-1.247
AA_A4C5:G9U10_AA
4
-1.739
3.000
33.657
-2.330
0.188
citation_author
pdbx_struct_assembly
pdbx_struct_oper_list
citation_author
chem_comp_atom
chem_comp_bond
database_2
pdbx_nmr_software
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Database references
Data collection
Database references
1
0
2001-07-18
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-01-24
1
4
2018-01-31
1
5
2024-05-01
_citation_author.name
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2001-05-01
REL
1
2D NOESY
DQF-COSY
TOCSY
1H,31P-Hetcor
1H,13C-HMQC
2D NOESY
100 mM
7.0
ambient
298
K
100 mM
7.0
ambient
273
K
A total of 172 distance restraints and 40 dihedral angle restraints.
simulated annealing
1.5 mM RNA 14mer; 10 mM NaPi, 90 mM NaCl, 0.1 mM EDTA, pH 7.0
100% D2O
0.5 mM RNA 14mer; 10 mM NaPi, 90 mM NaCl, 0.1 mM EDTA, pH 7.0
90% H2O/10% D2O
collection
VNMR
processing
NMRPipe
data analysis
NMRDraw
data analysis
NMRView
structure solution
Discover
refinement
Discover
600
Varian
INOVA
G
1
n
1
G
1
A
G
2
n
2
G
2
A
U
3
n
3
U
3
A
A
4
n
4
A
4
A
C
5
n
5
C
5
A
U
6
n
6
U
6
A
A
7
n
7
A
7
A
U
8
n
8
U
8
A
G
9
n
9
G
9
A
U
10
n
10
U
10
A
A
11
n
11
A
11
A
C
12
n
12
C
12
A
C
13
n
13
C
13
A
A
14
n
14
A
14
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
7
0.083
SIDE CHAIN
1
6.59
0.90
109.80
116.39
A
A
A
C5'
C4'
O4'
C
C
C
5
5
5
N
Solution Structure of an RNA Hairpin from HRV-14
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
13
A
N3
C
13
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
13
A
O2
C
13
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
13
A
N4
C
13
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
12
A
N3
C
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
12
A
O2
C
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
12
A
N4
C
12
1_555
hydrog
WATSON-CRICK
A
U
3
A
N3
U
3
1_555
A
A
11
A
N1
A
11
1_555
hydrog
WATSON-CRICK
A
U
3
A
O4
U
3
1_555
A
A
11
A
N6
A
11
1_555
hydrog
WATSON-CRICK
A
A
4
A
N1
A
4
1_555
A
U
10
A
N3
U
10
1_555
hydrog
WATSON-CRICK
A
A
4
A
N6
A
4
1_555
A
U
10
A
O4
U
10
1_555
hydrog
WATSON-CRICK
A
C
5
A
N3
C
5
1_555
A
G
9
A
N1
G
9
1_555
hydrog
WATSON-CRICK
A
C
5
A
N4
C
5
1_555
A
G
9
A
O6
G
9
1_555
hydrog
WATSON-CRICK
A
C
5
A
O2
C
5
1_555
A
G
9
A
N2
G
9
1_555
RNA
A form helix, triloop, RNA
NC_001490
GB
1
53
9626735
GGUACUAUGUACC
53
65
1IK1
1
13
9626735
A
1
1
13