0.019662
0.000000
0.000000
0.000000
0.014970
0.000000
0.000000
0.000000
0.009974
0.000000
0.000000
0.000000
Mcdonough, M.A.
Anderson, J.W.
Silvaggi, N.R.
Pratt, R.F.
Knox, J.R.
Kelly, J.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
50.859
66.799
100.263
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C3 H7 N O2
89.093
D-ALANINE
D-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C12 H21 N3 O6
303.312
GLYCYL-L-ALPHA-AMINO-EPSILON-PIMELYL-D-ALANINE
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
R
C
N
90
N
C
N
91
N
C
N
92
N
O
N
93
N
O
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
N
N
102
S
C
N
103
N
C
N
104
N
O
N
105
N
C
N
106
N
C
N
107
N
C
N
108
N
O
N
109
N
N
N
110
N
O
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
O
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
Y
155
N
C
Y
156
N
N
Y
157
N
C
Y
158
N
C
Y
159
N
N
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
S
C
N
179
N
C
N
180
N
C
N
181
N
C
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
S
C
N
198
N
C
N
199
N
O
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
N
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
S
N
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
C
N
307
N
C
N
308
N
N
N
309
N
O
N
310
R
C
N
311
N
C
N
312
N
C
N
313
N
O
N
314
S
C
N
315
N
N
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
O
N
320
N
N
N
321
N
O
N
322
N
O
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
O
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
R
C
N
364
N
O
N
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
N
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
N
414
N
O
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
N
432
N
C
N
433
N
C
N
434
N
O
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
Y
152
N
sing
Y
153
N
doub
Y
154
N
doub
N
155
N
sing
Y
156
N
sing
N
157
N
sing
Y
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
Y
260
N
doub
Y
261
N
sing
Y
262
N
sing
N
263
N
sing
Y
264
N
doub
N
265
N
sing
Y
266
N
doub
N
267
N
sing
Y
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
Y
398
N
doub
Y
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
322
111
122
10.1016/S0022-2836(02)00742-8
12215418
Structures of two kinetic intermediates reveal species specificity of penicillin-binding proteins.
2002
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
1427
1431
10.1073/pnas.98.4.1427
A 1.2-A SNAPSHOT OF THE FINAL STEP OF BACTERIAL CELL WALL BIOSYNTHESIS
2001
US
Biochemistry
BICHAW
0033
0006-2960
34
9532
9540
BINDING OF CEPHALOTHIN AND CEFOTAXIME TO D-ALA-D-ALA-PEPTIDASE REVEALS A FUNCTIONAL BASIS OF A NATURAL MUTATION IN A LOW-AFFINITY PENICILLIN-BINDING PROTEIN AND IN EXTENDED-SPECTRUM BETA-LACTAMASES
1995
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
254
223
236
10.1006/jmbi.1995.0613
THE REFINED CRYSTALLOGRAPHIC STRUCTURE OF A DD-PEPTIDASE PENICILLIN-TARGET ENZYME AT 1.6 A RESOLUTION
1995
10.2210/pdb1iki/pdb
pdb_00001iki
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
MONOCHROMATOR, MIRRORS
CCD
2000-08-26
BRANDEIS - B4
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
X12C
NSLS
1.000
SYNCHROTRON
NSLS BEAMLINE X12C
37422.574
D-ALANYL-D-ALANINE CARBOXYPEPTIDASE
3.4.16.4
1
nat
polymer
303.312
GLYCYL-L-ALPHA-AMINO-EPSILON-PIMELYL-D-ALANINE
1
syn
non-polymer
89.093
D-ALANINE
1
syn
non-polymer
18.015
water
587
nat
water
DD-PEPTIDASE
no
no
ADLPAPDDTGLQAVLHTALSQGAPGAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGK
LDLDASVNTYLPGLLPDDRITVRQVMSHRSGLYDYTNDMFAQTVPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYS
NTNFVVAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYVHPDTVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAV
ISSTQDLDTFFSALMSGQLMSAAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVYGHTGTVQGYYTYAFASKDGKRSVT
ALANTSNNVNVLNTMARTLESAFCGKPTT
ADLPAPDDTGLQAVLHTALSQGAPGAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGK
LDLDASVNTYLPGLLPDDRITVRQVMSHRSGLYDYTNDMFAQTVPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYS
NTNFVVAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYVHPDTVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAV
ISSTQDLDTFFSALMSGQLMSAAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVYGHTGTVQGYYTYAFASKDGKRSVT
ALANTSNNVNVLNTMARTLESAFCGKPTT
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Streptomyces
sample
31952
Streptomyces sp.
R61
1
1.97
37.6
VAPOR DIFFUSION, HANGING DROP
6.8
PEG 8000, SODIUM PHOSPHATE, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 20K
293.0
exptl_crystal_grow
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Experimental preparation
Data collection
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-09-11
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-01-31
1
4
2019-07-24
1
5
2023-08-16
_exptl_crystal_grow.temp
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
MICHAELIS COMPLEX OF INACTIVE STREPTOMYCES R61 DD-PEPTIDASE WITH A SPECIFIC PEPTIDOGLYCAN SUBSTRATE FRAGMENT
CRYSTAL STRUCTURE OF STREPTOMYCES R61 DD-PEPTIDASE COMPLEXED WITH A NOVEL CEPHALOSPORIN ANALOG OF CELL WALL PEPTIDOGLYCAN
NATIVE
RCSB
Y
RCSB
2001-05-03
REL
REY
GLYCYL-L-ALPHA-AMINO-EPSILON-PIMELYL-D-ALANINE
DAL
D-ALANINE
HOH
water
3PTE
PDB ENTRY 3PTE
PDB
experimental model
REX
400
2
REY
REY
400
A
DAL
500
3
DAL
DAL
500
A
HOH
1001
4
HOH
HOH
1001
A
HOH
1002
4
HOH
HOH
1002
A
HOH
1003
4
HOH
HOH
1003
A
HOH
1004
4
HOH
HOH
1004
A
HOH
1005
4
HOH
HOH
1005
A
HOH
1006
4
HOH
HOH
1006
A
HOH
1007
4
HOH
HOH
1007
A
HOH
1008
4
HOH
HOH
1008
A
HOH
1009
4
HOH
HOH
1009
A
HOH
1010
4
HOH
HOH
1010
A
HOH
1011
4
HOH
HOH
1011
A
HOH
1012
4
HOH
HOH
1012
A
HOH
1013
4
HOH
HOH
1013
A
HOH
1014
4
HOH
HOH
1014
A
HOH
1015
4
HOH
HOH
1015
A
HOH
1016
4
HOH
HOH
1016
A
HOH
1017
4
HOH
HOH
1017
A
HOH
1018
4
HOH
HOH
1018
A
HOH
1019
4
HOH
HOH
1019
A
HOH
1020
4
HOH
HOH
1020
A
HOH
1021
4
HOH
HOH
1021
A
HOH
1022
4
HOH
HOH
1022
A
HOH
1023
4
HOH
HOH
1023
A
HOH
1024
4
HOH
HOH
1024
A
HOH
1025
4
HOH
HOH
1025
A
HOH
1026
4
HOH
HOH
1026
A
HOH
1027
4
HOH
HOH
1027
A
HOH
1028
4
HOH
HOH
1028
A
HOH
1029
4
HOH
HOH
1029
A
HOH
1030
4
HOH
HOH
1030
A
HOH
1031
4
HOH
HOH
1031
A
HOH
1032
4
HOH
HOH
1032
A
HOH
1033
4
HOH
HOH
1033
A
HOH
1034
4
HOH
HOH
1034
A
HOH
1035
4
HOH
HOH
1035
A
HOH
1036
4
HOH
HOH
1036
A
HOH
1037
4
HOH
HOH
1037
A
HOH
1038
4
HOH
HOH
1038
A
HOH
1039
4
HOH
HOH
1039
A
HOH
1040
4
HOH
HOH
1040
A
HOH
1041
4
HOH
HOH
1041
A
HOH
1042
4
HOH
HOH
1042
A
HOH
1043
4
HOH
HOH
1043
A
HOH
1044
4
HOH
HOH
1044
A
HOH
1045
4
HOH
HOH
1045
A
HOH
1046
4
HOH
HOH
1046
A
HOH
1047
4
HOH
HOH
1047
A
HOH
1048
4
HOH
HOH
1048
A
HOH
1049
4
HOH
HOH
1049
A
HOH
1050
4
HOH
HOH
1050
A
HOH
1051
4
HOH
HOH
1051
A
HOH
1052
4
HOH
HOH
1052
A
HOH
1053
4
HOH
HOH
1053
A
HOH
1054
4
HOH
HOH
1054
A
HOH
1055
4
HOH
HOH
1055
A
HOH
1056
4
HOH
HOH
1056
A
HOH
1057
4
HOH
HOH
1057
A
HOH
1058
4
HOH
HOH
1058
A
HOH
1059
4
HOH
HOH
1059
A
HOH
1060
4
HOH
HOH
1060
A
HOH
1061
4
HOH
HOH
1061
A
HOH
1062
4
HOH
HOH
1062
A
HOH
1063
4
HOH
HOH
1063
A
HOH
1064
4
HOH
HOH
1064
A
HOH
1065
4
HOH
HOH
1065
A
HOH
1066
4
HOH
HOH
1066
A
HOH
1067
4
HOH
HOH
1067
A
HOH
1068
4
HOH
HOH
1068
A
HOH
1069
4
HOH
HOH
1069
A
HOH
1070
4
HOH
HOH
1070
A
HOH
1071
4
HOH
HOH
1071
A
HOH
1072
4
HOH
HOH
1072
A
HOH
1073
4
HOH
HOH
1073
A
HOH
1074
4
HOH
HOH
1074
A
HOH
1075
4
HOH
HOH
1075
A
HOH
1076
4
HOH
HOH
1076
A
HOH
1077
4
HOH
HOH
1077
A
HOH
1078
4
HOH
HOH
1078
A
HOH
1079
4
HOH
HOH
1079
A
HOH
1080
4
HOH
HOH
1080
A
HOH
1081
4
HOH
HOH
1081
A
HOH
1082
4
HOH
HOH
1082
A
HOH
1083
4
HOH
HOH
1083
A
HOH
1084
4
HOH
HOH
1084
A
HOH
1085
4
HOH
HOH
1085
A
HOH
1086
4
HOH
HOH
1086
A
HOH
1087
4
HOH
HOH
1087
A
HOH
1088
4
HOH
HOH
1088
A
HOH
1089
4
HOH
HOH
1089
A
HOH
1090
4
HOH
HOH
1090
A
HOH
1091
4
HOH
HOH
1091
A
HOH
1092
4
HOH
HOH
1092
A
HOH
1093
4
HOH
HOH
1093
A
HOH
1094
4
HOH
HOH
1094
A
HOH
1095
4
HOH
HOH
1095
A
HOH
1096
4
HOH
HOH
1096
A
HOH
1097
4
HOH
HOH
1097
A
HOH
1098
4
HOH
HOH
1098
A
HOH
1099
4
HOH
HOH
1099
A
HOH
1100
4
HOH
HOH
1100
A
HOH
1101
4
HOH
HOH
1101
A
HOH
1102
4
HOH
HOH
1102
A
HOH
1103
4
HOH
HOH
1103
A
HOH
1104
4
HOH
HOH
1104
A
HOH
1105
4
HOH
HOH
1105
A
HOH
1106
4
HOH
HOH
1106
A
HOH
1107
4
HOH
HOH
1107
A
HOH
1108
4
HOH
HOH
1108
A
HOH
1109
4
HOH
HOH
1109
A
HOH
1110
4
HOH
HOH
1110
A
HOH
1111
4
HOH
HOH
1111
A
HOH
1112
4
HOH
HOH
1112
A
HOH
1113
4
HOH
HOH
1113
A
HOH
1114
4
HOH
HOH
1114
A
HOH
1115
4
HOH
HOH
1115
A
HOH
1116
4
HOH
HOH
1116
A
HOH
1117
4
HOH
HOH
1117
A
HOH
1118
4
HOH
HOH
1118
A
HOH
1119
4
HOH
HOH
1119
A
HOH
1120
4
HOH
HOH
1120
A
HOH
1121
4
HOH
HOH
1121
A
HOH
1122
4
HOH
HOH
1122
A
HOH
1123
4
HOH
HOH
1123
A
HOH
1124
4
HOH
HOH
1124
A
HOH
1125
4
HOH
HOH
1125
A
HOH
1126
4
HOH
HOH
1126
A
HOH
1127
4
HOH
HOH
1127
A
HOH
1128
4
HOH
HOH
1128
A
HOH
1129
4
HOH
HOH
1129
A
HOH
1130
4
HOH
HOH
1130
A
HOH
1131
4
HOH
HOH
1131
A
HOH
1132
4
HOH
HOH
1132
A
HOH
1133
4
HOH
HOH
1133
A
HOH
1134
4
HOH
HOH
1134
A
HOH
1135
4
HOH
HOH
1135
A
HOH
1136
4
HOH
HOH
1136
A
HOH
1137
4
HOH
HOH
1137
A
HOH
1138
4
HOH
HOH
1138
A
HOH
1139
4
HOH
HOH
1139
A
HOH
1140
4
HOH
HOH
1140
A
HOH
1141
4
HOH
HOH
1141
A
HOH
1142
4
HOH
HOH
1142
A
HOH
1143
4
HOH
HOH
1143
A
HOH
1144
4
HOH
HOH
1144
A
HOH
1145
4
HOH
HOH
1145
A
HOH
1146
4
HOH
HOH
1146
A
HOH
1147
4
HOH
HOH
1147
A
HOH
1148
4
HOH
HOH
1148
A
HOH
1149
4
HOH
HOH
1149
A
HOH
1150
4
HOH
HOH
1150
A
HOH
1151
4
HOH
HOH
1151
A
HOH
1152
4
HOH
HOH
1152
A
HOH
1153
4
HOH
HOH
1153
A
HOH
1154
4
HOH
HOH
1154
A
HOH
1155
4
HOH
HOH
1155
A
HOH
1156
4
HOH
HOH
1156
A
HOH
1157
4
HOH
HOH
1157
A
HOH
1158
4
HOH
HOH
1158
A
HOH
1159
4
HOH
HOH
1159
A
HOH
1160
4
HOH
HOH
1160
A
HOH
1161
4
HOH
HOH
1161
A
HOH
1162
4
HOH
HOH
1162
A
HOH
1163
4
HOH
HOH
1163
A
HOH
1164
4
HOH
HOH
1164
A
HOH
1165
4
HOH
HOH
1165
A
HOH
1166
4
HOH
HOH
1166
A
HOH
1167
4
HOH
HOH
1167
A
HOH
1168
4
HOH
HOH
1168
A
HOH
1169
4
HOH
HOH
1169
A
HOH
1170
4
HOH
HOH
1170
A
HOH
1171
4
HOH
HOH
1171
A
HOH
1172
4
HOH
HOH
1172
A
HOH
1173
4
HOH
HOH
1173
A
HOH
1174
4
HOH
HOH
1174
A
HOH
1175
4
HOH
HOH
1175
A
HOH
1176
4
HOH
HOH
1176
A
HOH
1177
4
HOH
HOH
1177
A
HOH
1178
4
HOH
HOH
1178
A
HOH
1179
4
HOH
HOH
1179
A
HOH
1180
4
HOH
HOH
1180
A
HOH
1181
4
HOH
HOH
1181
A
HOH
1182
4
HOH
HOH
1182
A
HOH
1183
4
HOH
HOH
1183
A
HOH
1184
4
HOH
HOH
1184
A
HOH
1185
4
HOH
HOH
1185
A
HOH
1186
4
HOH
HOH
1186
A
HOH
1187
4
HOH
HOH
1187
A
HOH
1188
4
HOH
HOH
1188
A
HOH
1189
4
HOH
HOH
1189
A
HOH
1190
4
HOH
HOH
1190
A
HOH
1191
4
HOH
HOH
1191
A
HOH
1192
4
HOH
HOH
1192
A
HOH
1193
4
HOH
HOH
1193
A
HOH
1194
4
HOH
HOH
1194
A
HOH
1195
4
HOH
HOH
1195
A
HOH
1196
4
HOH
HOH
1196
A
HOH
1197
4
HOH
HOH
1197
A
HOH
1198
4
HOH
HOH
1198
A
HOH
1199
4
HOH
HOH
1199
A
HOH
1200
4
HOH
HOH
1200
A
HOH
1201
4
HOH
HOH
1201
A
HOH
1202
4
HOH
HOH
1202
A
HOH
1203
4
HOH
HOH
1203
A
HOH
1204
4
HOH
HOH
1204
A
HOH
1205
4
HOH
HOH
1205
A
HOH
1206
4
HOH
HOH
1206
A
HOH
1207
4
HOH
HOH
1207
A
HOH
1208
4
HOH
HOH
1208
A
HOH
1209
4
HOH
HOH
1209
A
HOH
1210
4
HOH
HOH
1210
A
HOH
1211
4
HOH
HOH
1211
A
HOH
1212
4
HOH
HOH
1212
A
HOH
1213
4
HOH
HOH
1213
A
HOH
1214
4
HOH
HOH
1214
A
HOH
1215
4
HOH
HOH
1215
A
HOH
1216
4
HOH
HOH
1216
A
HOH
1217
4
HOH
HOH
1217
A
HOH
1218
4
HOH
HOH
1218
A
HOH
1219
4
HOH
HOH
1219
A
HOH
1220
4
HOH
HOH
1220
A
HOH
1221
4
HOH
HOH
1221
A
HOH
1222
4
HOH
HOH
1222
A
HOH
1223
4
HOH
HOH
1223
A
HOH
1224
4
HOH
HOH
1224
A
HOH
1225
4
HOH
HOH
1225
A
HOH
1226
4
HOH
HOH
1226
A
HOH
1227
4
HOH
HOH
1227
A
HOH
1228
4
HOH
HOH
1228
A
HOH
1229
4
HOH
HOH
1229
A
HOH
1230
4
HOH
HOH
1230
A
HOH
1231
4
HOH
HOH
1231
A
HOH
1232
4
HOH
HOH
1232
A
HOH
1233
4
HOH
HOH
1233
A
HOH
1234
4
HOH
HOH
1234
A
HOH
1235
4
HOH
HOH
1235
A
HOH
1236
4
HOH
HOH
1236
A
HOH
1237
4
HOH
HOH
1237
A
HOH
1238
4
HOH
HOH
1238
A
HOH
1239
4
HOH
HOH
1239
A
HOH
1240
4
HOH
HOH
1240
A
HOH
1241
4
HOH
HOH
1241
A
HOH
1242
4
HOH
HOH
1242
A
HOH
1243
4
HOH
HOH
1243
A
HOH
1244
4
HOH
HOH
1244
A
HOH
1245
4
HOH
HOH
1245
A
HOH
1246
4
HOH
HOH
1246
A
HOH
1247
4
HOH
HOH
1247
A
HOH
1248
4
HOH
HOH
1248
A
HOH
1249
4
HOH
HOH
1249
A
HOH
1250
4
HOH
HOH
1250
A
HOH
1251
4
HOH
HOH
1251
A
HOH
1252
4
HOH
HOH
1252
A
HOH
1253
4
HOH
HOH
1253
A
HOH
1254
4
HOH
HOH
1254
A
HOH
1255
4
HOH
HOH
1255
A
HOH
1256
4
HOH
HOH
1256
A
HOH
1257
4
HOH
HOH
1257
A
HOH
1258
4
HOH
HOH
1258
A
HOH
1259
4
HOH
HOH
1259
A
HOH
1260
4
HOH
HOH
1260
A
HOH
1261
4
HOH
HOH
1261
A
HOH
1262
4
HOH
HOH
1262
A
HOH
1263
4
HOH
HOH
1263
A
HOH
1264
4
HOH
HOH
1264
A
HOH
1265
4
HOH
HOH
1265
A
HOH
1266
4
HOH
HOH
1266
A
HOH
1267
4
HOH
HOH
1267
A
HOH
1268
4
HOH
HOH
1268
A
HOH
1269
4
HOH
HOH
1269
A
HOH
1270
4
HOH
HOH
1270
A
HOH
1271
4
HOH
HOH
1271
A
HOH
1272
4
HOH
HOH
1272
A
HOH
1273
4
HOH
HOH
1273
A
HOH
1274
4
HOH
HOH
1274
A
HOH
1275
4
HOH
HOH
1275
A
HOH
1276
4
HOH
HOH
1276
A
HOH
1277
4
HOH
HOH
1277
A
HOH
1278
4
HOH
HOH
1278
A
HOH
1279
4
HOH
HOH
1279
A
HOH
1280
4
HOH
HOH
1280
A
HOH
1281
4
HOH
HOH
1281
A
HOH
1282
4
HOH
HOH
1282
A
HOH
1283
4
HOH
HOH
1283
A
HOH
1284
4
HOH
HOH
1284
A
HOH
1285
4
HOH
HOH
1285
A
HOH
1286
4
HOH
HOH
1286
A
HOH
1287
4
HOH
HOH
1287
A
HOH
1288
4
HOH
HOH
1288
A
HOH
1289
4
HOH
HOH
1289
A
HOH
1290
4
HOH
HOH
1290
A
HOH
1291
4
HOH
HOH
1291
A
HOH
1292
4
HOH
HOH
1292
A
HOH
1293
4
HOH
HOH
1293
A
HOH
1294
4
HOH
HOH
1294
A
HOH
1295
4
HOH
HOH
1295
A
HOH
1296
4
HOH
HOH
1296
A
HOH
1297
4
HOH
HOH
1297
A
HOH
1298
4
HOH
HOH
1298
A
HOH
1299
4
HOH
HOH
1299
A
HOH
1300
4
HOH
HOH
1300
A
HOH
1301
4
HOH
HOH
1301
A
HOH
1302
4
HOH
HOH
1302
A
HOH
1303
4
HOH
HOH
1303
A
HOH
1304
4
HOH
HOH
1304
A
HOH
1305
4
HOH
HOH
1305
A
HOH
1306
4
HOH
HOH
1306
A
HOH
1307
4
HOH
HOH
1307
A
HOH
1308
4
HOH
HOH
1308
A
HOH
1309
4
HOH
HOH
1309
A
HOH
1310
4
HOH
HOH
1310
A
HOH
1311
4
HOH
HOH
1311
A
HOH
1312
4
HOH
HOH
1312
A
HOH
1313
4
HOH
HOH
1313
A
HOH
1314
4
HOH
HOH
1314
A
HOH
1315
4
HOH
HOH
1315
A
HOH
1316
4
HOH
HOH
1316
A
HOH
1317
4
HOH
HOH
1317
A
HOH
1318
4
HOH
HOH
1318
A
HOH
1319
4
HOH
HOH
1319
A
HOH
1320
4
HOH
HOH
1320
A
HOH
1321
4
HOH
HOH
1321
A
HOH
1322
4
HOH
HOH
1322
A
HOH
1323
4
HOH
HOH
1323
A
HOH
1324
4
HOH
HOH
1324
A
HOH
1325
4
HOH
HOH
1325
A
HOH
1326
4
HOH
HOH
1326
A
HOH
1327
4
HOH
HOH
1327
A
HOH
1328
4
HOH
HOH
1328
A
HOH
1329
4
HOH
HOH
1329
A
HOH
1330
4
HOH
HOH
1330
A
HOH
1331
4
HOH
HOH
1331
A
HOH
1332
4
HOH
HOH
1332
A
HOH
1333
4
HOH
HOH
1333
A
HOH
1334
4
HOH
HOH
1334
A
HOH
1335
4
HOH
HOH
1335
A
HOH
1336
4
HOH
HOH
1336
A
HOH
1337
4
HOH
HOH
1337
A
HOH
1338
4
HOH
HOH
1338
A
HOH
1339
4
HOH
HOH
1339
A
HOH
1340
4
HOH
HOH
1340
A
HOH
1341
4
HOH
HOH
1341
A
HOH
1342
4
HOH
HOH
1342
A
HOH
1343
4
HOH
HOH
1343
A
HOH
1344
4
HOH
HOH
1344
A
HOH
1345
4
HOH
HOH
1345
A
HOH
1346
4
HOH
HOH
1346
A
HOH
1347
4
HOH
HOH
1347
A
HOH
1348
4
HOH
HOH
1348
A
HOH
1349
4
HOH
HOH
1349
A
HOH
1350
4
HOH
HOH
1350
A
HOH
1351
4
HOH
HOH
1351
A
HOH
1352
4
HOH
HOH
1352
A
HOH
1353
4
HOH
HOH
1353
A
HOH
1354
4
HOH
HOH
1354
A
HOH
1355
4
HOH
HOH
1355
A
HOH
1356
4
HOH
HOH
1356
A
HOH
1357
4
HOH
HOH
1357
A
HOH
1358
4
HOH
HOH
1358
A
HOH
1359
4
HOH
HOH
1359
A
HOH
1360
4
HOH
HOH
1360
A
HOH
1361
4
HOH
HOH
1361
A
HOH
1362
4
HOH
HOH
1362
A
HOH
1363
4
HOH
HOH
1363
A
HOH
1364
4
HOH
HOH
1364
A
HOH
1365
4
HOH
HOH
1365
A
HOH
1366
4
HOH
HOH
1366
A
HOH
1367
4
HOH
HOH
1367
A
HOH
1368
4
HOH
HOH
1368
A
HOH
1369
4
HOH
HOH
1369
A
HOH
1370
4
HOH
HOH
1370
A
HOH
1371
4
HOH
HOH
1371
A
HOH
1372
4
HOH
HOH
1372
A
HOH
1373
4
HOH
HOH
1373
A
HOH
1374
4
HOH
HOH
1374
A
HOH
1375
4
HOH
HOH
1375
A
HOH
1376
4
HOH
HOH
1376
A
HOH
1377
4
HOH
HOH
1377
A
HOH
1378
4
HOH
HOH
1378
A
HOH
1379
4
HOH
HOH
1379
A
HOH
1380
4
HOH
HOH
1380
A
HOH
1381
4
HOH
HOH
1381
A
HOH
1382
4
HOH
HOH
1382
A
HOH
1383
4
HOH
HOH
1383
A
HOH
1384
4
HOH
HOH
1384
A
HOH
1385
4
HOH
HOH
1385
A
HOH
1386
4
HOH
HOH
1386
A
HOH
1387
4
HOH
HOH
1387
A
HOH
1388
4
HOH
HOH
1388
A
HOH
1389
4
HOH
HOH
1389
A
HOH
1390
4
HOH
HOH
1390
A
HOH
1391
4
HOH
HOH
1391
A
HOH
1392
4
HOH
HOH
1392
A
HOH
1393
4
HOH
HOH
1393
A
HOH
1394
4
HOH
HOH
1394
A
HOH
1395
4
HOH
HOH
1395
A
HOH
1396
4
HOH
HOH
1396
A
HOH
1397
4
HOH
HOH
1397
A
HOH
1398
4
HOH
HOH
1398
A
HOH
1399
4
HOH
HOH
1399
A
HOH
1400
4
HOH
HOH
1400
A
HOH
1401
4
HOH
HOH
1401
A
HOH
1402
4
HOH
HOH
1402
A
HOH
1403
4
HOH
HOH
1403
A
HOH
1404
4
HOH
HOH
1404
A
HOH
1405
4
HOH
HOH
1405
A
HOH
1406
4
HOH
HOH
1406
A
HOH
1407
4
HOH
HOH
1407
A
HOH
1408
4
HOH
HOH
1408
A
HOH
1409
4
HOH
HOH
1409
A
HOH
1410
4
HOH
HOH
1410
A
HOH
1411
4
HOH
HOH
1411
A
HOH
1412
4
HOH
HOH
1412
A
HOH
1413
4
HOH
HOH
1413
A
HOH
1414
4
HOH
HOH
1414
A
HOH
1415
4
HOH
HOH
1415
A
HOH
1416
4
HOH
HOH
1416
A
HOH
1417
4
HOH
HOH
1417
A
HOH
1418
4
HOH
HOH
1418
A
HOH
1419
4
HOH
HOH
1419
A
HOH
1420
4
HOH
HOH
1420
A
HOH
1421
4
HOH
HOH
1421
A
HOH
1422
4
HOH
HOH
1422
A
HOH
1423
4
HOH
HOH
1423
A
HOH
1424
4
HOH
HOH
1424
A
HOH
1425
4
HOH
HOH
1425
A
HOH
1426
4
HOH
HOH
1426
A
HOH
1427
4
HOH
HOH
1427
A
HOH
1428
4
HOH
HOH
1428
A
HOH
1429
4
HOH
HOH
1429
A
HOH
1430
4
HOH
HOH
1430
A
HOH
1431
4
HOH
HOH
1431
A
HOH
1432
4
HOH
HOH
1432
A
HOH
1433
4
HOH
HOH
1433
A
HOH
1434
4
HOH
HOH
1434
A
HOH
1435
4
HOH
HOH
1435
A
HOH
1436
4
HOH
HOH
1436
A
HOH
1437
4
HOH
HOH
1437
A
HOH
1438
4
HOH
HOH
1438
A
HOH
1439
4
HOH
HOH
1439
A
HOH
1440
4
HOH
HOH
1440
A
HOH
1441
4
HOH
HOH
1441
A
HOH
1442
4
HOH
HOH
1442
A
HOH
1443
4
HOH
HOH
1443
A
HOH
1444
4
HOH
HOH
1444
A
HOH
1445
4
HOH
HOH
1445
A
HOH
1446
4
HOH
HOH
1446
A
HOH
1447
4
HOH
HOH
1447
A
HOH
1448
4
HOH
HOH
1448
A
HOH
1449
4
HOH
HOH
1449
A
HOH
1450
4
HOH
HOH
1450
A
HOH
1451
4
HOH
HOH
1451
A
HOH
1452
4
HOH
HOH
1452
A
HOH
1453
4
HOH
HOH
1453
A
HOH
1454
4
HOH
HOH
1454
A
HOH
1455
4
HOH
HOH
1455
A
HOH
1456
4
HOH
HOH
1456
A
HOH
1457
4
HOH
HOH
1457
A
HOH
1458
4
HOH
HOH
1458
A
HOH
1459
4
HOH
HOH
1459
A
HOH
1460
4
HOH
HOH
1460
A
HOH
1461
4
HOH
HOH
1461
A
HOH
1462
4
HOH
HOH
1462
A
HOH
1463
4
HOH
HOH
1463
A
HOH
1464
4
HOH
HOH
1464
A
HOH
1465
4
HOH
HOH
1465
A
HOH
1466
4
HOH
HOH
1466
A
HOH
1467
4
HOH
HOH
1467
A
HOH
1468
4
HOH
HOH
1468
A
HOH
1469
4
HOH
HOH
1469
A
HOH
1470
4
HOH
HOH
1470
A
HOH
1471
4
HOH
HOH
1471
A
HOH
1472
4
HOH
HOH
1472
A
HOH
1473
4
HOH
HOH
1473
A
HOH
1474
4
HOH
HOH
1474
A
HOH
1475
4
HOH
HOH
1475
A
HOH
1476
4
HOH
HOH
1476
A
HOH
1477
4
HOH
HOH
1477
A
HOH
1478
4
HOH
HOH
1478
A
HOH
1479
4
HOH
HOH
1479
A
HOH
1480
4
HOH
HOH
1480
A
HOH
1481
4
HOH
HOH
1481
A
HOH
1482
4
HOH
HOH
1482
A
HOH
1483
4
HOH
HOH
1483
A
HOH
1484
4
HOH
HOH
1484
A
HOH
1485
4
HOH
HOH
1485
A
HOH
1486
4
HOH
HOH
1486
A
HOH
1487
4
HOH
HOH
1487
A
HOH
1488
4
HOH
HOH
1488
A
HOH
1489
4
HOH
HOH
1489
A
HOH
1490
4
HOH
HOH
1490
A
HOH
1491
4
HOH
HOH
1491
A
HOH
1492
4
HOH
HOH
1492
A
HOH
1493
4
HOH
HOH
1493
A
HOH
1494
4
HOH
HOH
1494
A
HOH
1495
4
HOH
HOH
1495
A
HOH
1496
4
HOH
HOH
1496
A
HOH
1497
4
HOH
HOH
1497
A
HOH
1498
4
HOH
HOH
1498
A
HOH
1499
4
HOH
HOH
1499
A
HOH
1500
4
HOH
HOH
1500
A
HOH
1501
4
HOH
HOH
1501
A
HOH
1502
4
HOH
HOH
1502
A
HOH
1503
4
HOH
HOH
1503
A
HOH
1504
4
HOH
HOH
1504
A
HOH
1505
4
HOH
HOH
1505
A
HOH
1506
4
HOH
HOH
1506
A
HOH
1507
4
HOH
HOH
1507
A
HOH
1508
4
HOH
HOH
1508
A
HOH
1509
4
HOH
HOH
1509
A
HOH
1510
4
HOH
HOH
1510
A
HOH
1511
4
HOH
HOH
1511
A
HOH
1512
4
HOH
HOH
1512
A
HOH
1513
4
HOH
HOH
1513
A
HOH
1514
4
HOH
HOH
1514
A
HOH
1515
4
HOH
HOH
1515
A
HOH
1516
4
HOH
HOH
1516
A
HOH
1517
4
HOH
HOH
1517
A
HOH
1518
4
HOH
HOH
1518
A
HOH
1519
4
HOH
HOH
1519
A
HOH
1520
4
HOH
HOH
1520
A
HOH
1521
4
HOH
HOH
1521
A
HOH
1523
4
HOH
HOH
1523
A
HOH
1524
4
HOH
HOH
1524
A
HOH
1525
4
HOH
HOH
1525
A
HOH
1526
4
HOH
HOH
1526
A
HOH
1527
4
HOH
HOH
1527
A
HOH
1528
4
HOH
HOH
1528
A
HOH
1529
4
HOH
HOH
1529
A
HOH
1530
4
HOH
HOH
1530
A
HOH
1531
4
HOH
HOH
1531
A
HOH
1532
4
HOH
HOH
1532
A
HOH
1533
4
HOH
HOH
1533
A
HOH
1534
4
HOH
HOH
1534
A
HOH
1535
4
HOH
HOH
1535
A
HOH
1536
4
HOH
HOH
1536
A
HOH
1538
4
HOH
HOH
1538
A
HOH
1539
4
HOH
HOH
1539
A
HOH
1540
4
HOH
HOH
1540
A
HOH
1541
4
HOH
HOH
1541
A
HOH
1542
4
HOH
HOH
1542
A
HOH
1543
4
HOH
HOH
1543
A
HOH
1544
4
HOH
HOH
1544
A
HOH
1545
4
HOH
HOH
1545
A
HOH
1546
4
HOH
HOH
1546
A
HOH
1547
4
HOH
HOH
1547
A
HOH
1548
4
HOH
HOH
1548
A
HOH
1549
4
HOH
HOH
1549
A
HOH
1550
4
HOH
HOH
1550
A
HOH
1551
4
HOH
HOH
1551
A
HOH
1553
4
HOH
HOH
1553
A
HOH
1554
4
HOH
HOH
1554
A
HOH
1555
4
HOH
HOH
1555
A
HOH
1556
4
HOH
HOH
1556
A
HOH
1557
4
HOH
HOH
1557
A
HOH
1558
4
HOH
HOH
1558
A
HOH
1559
4
HOH
HOH
1559
A
HOH
1560
4
HOH
HOH
1560
A
HOH
1561
4
HOH
HOH
1561
A
HOH
1562
4
HOH
HOH
1562
A
HOH
1563
4
HOH
HOH
1563
A
HOH
1564
4
HOH
HOH
1564
A
HOH
1565
4
HOH
HOH
1565
A
HOH
1567
4
HOH
HOH
1567
A
HOH
1568
4
HOH
HOH
1568
A
HOH
1569
4
HOH
HOH
1569
A
HOH
1570
4
HOH
HOH
1570
A
HOH
1571
4
HOH
HOH
1571
A
HOH
1572
4
HOH
HOH
1572
A
HOH
1573
4
HOH
HOH
1573
A
HOH
1574
4
HOH
HOH
1574
A
HOH
1575
4
HOH
HOH
1575
A
HOH
1576
4
HOH
HOH
1576
A
HOH
1577
4
HOH
HOH
1577
A
HOH
1578
4
HOH
HOH
1578
A
HOH
1579
4
HOH
HOH
1579
A
HOH
1580
4
HOH
HOH
1580
A
HOH
1581
4
HOH
HOH
1581
A
HOH
1582
4
HOH
HOH
1582
A
HOH
1583
4
HOH
HOH
1583
A
HOH
1584
4
HOH
HOH
1584
A
HOH
1585
4
HOH
HOH
1585
A
HOH
1586
4
HOH
HOH
1586
A
HOH
1587
4
HOH
HOH
1587
A
HOH
1588
4
HOH
HOH
1588
A
HOH
1589
4
HOH
HOH
1589
A
HOH
1590
4
HOH
HOH
1590
A
HOH
1591
4
HOH
HOH
1591
A
n
1
1
A
n
2
2
A
LEU
3
n
3
LEU
3
A
PRO
4
n
4
PRO
4
A
ALA
5
n
5
ALA
5
A
PRO
6
n
6
PRO
6
A
ASP
7
n
7
ASP
7
A
ASP
8
n
8
ASP
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
LEU
11
n
11
LEU
11
A
GLN
12
n
12
GLN
12
A
ALA
13
n
13
ALA
13
A
VAL
14
n
14
VAL
14
A
LEU
15
n
15
LEU
15
A
HIS
16
n
16
HIS
16
A
THR
17
n
17
THR
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
SER
20
n
20
SER
20
A
GLN
21
n
21
GLN
21
A
GLY
22
n
22
GLY
22
A
ALA
23
n
23
ALA
23
A
PRO
24
n
24
PRO
24
A
GLY
25
n
25
GLY
25
A
ALA
26
n
26
ALA
26
A
MET
27
n
27
MET
27
A
VAL
28
n
28
VAL
28
A
ARG
29
n
29
ARG
29
A
VAL
30
n
30
VAL
30
A
ASP
31
n
31
ASP
31
A
ASP
32
n
32
ASP
32
A
ASN
33
n
33
ASN
33
A
GLY
34
n
34
GLY
34
A
THR
35
n
35
THR
35
A
ILE
36
n
36
ILE
36
A
HIS
37
n
37
HIS
37
A
GLN
38
n
38
GLN
38
A
LEU
39
n
39
LEU
39
A
SER
40
n
40
SER
40
A
GLU
41
n
41
GLU
41
A
GLY
42
n
42
GLY
42
A
VAL
43
n
43
VAL
43
A
ALA
44
n
44
ALA
44
A
ASP
45
n
45
ASP
45
A
ARG
46
n
46
ARG
46
A
ALA
47
n
47
ALA
47
A
THR
48
n
48
THR
48
A
GLY
49
n
49
GLY
49
A
ARG
50
n
50
ARG
50
A
ALA
51
n
51
ALA
51
A
ILE
52
n
52
ILE
52
A
THR
53
n
53
THR
53
A
THR
54
n
54
THR
54
A
THR
55
n
55
THR
55
A
ASP
56
n
56
ASP
56
A
ARG
57
n
57
ARG
57
A
PHE
58
n
58
PHE
58
A
ARG
59
n
59
ARG
59
A
VAL
60
n
60
VAL
60
A
GLY
61
n
61
GLY
61
A
SER
62
n
62
SER
62
A
VAL
63
n
63
VAL
63
A
THR
64
n
64
THR
64
A
LYS
65
n
65
LYS
65
A
SER
66
n
66
SER
66
A
PHE
67
n
67
PHE
67
A
SER
68
n
68
SER
68
A
ALA
69
n
69
ALA
69
A
VAL
70
n
70
VAL
70
A
VAL
71
n
71
VAL
71
A
LEU
72
n
72
LEU
72
A
LEU
73
n
73
LEU
73
A
GLN
74
n
74
GLN
74
A
LEU
75
n
75
LEU
75
A
VAL
76
n
76
VAL
76
A
ASP
77
n
77
ASP
77
A
GLU
78
n
78
GLU
78
A
GLY
79
n
79
GLY
79
A
LYS
80
n
80
LYS
80
A
LEU
81
n
81
LEU
81
A
ASP
82
n
82
ASP
82
A
LEU
83
n
83
LEU
83
A
ASP
84
n
84
ASP
84
A
ALA
85
n
85
ALA
85
A
SER
86
n
86
SER
86
A
VAL
87
n
87
VAL
87
A
ASN
88
n
88
ASN
88
A
THR
89
n
89
THR
89
A
TYR
90
n
90
TYR
90
A
LEU
91
n
91
LEU
91
A
PRO
92
n
92
PRO
92
A
GLY
93
n
93
GLY
93
A
LEU
94
n
94
LEU
94
A
LEU
95
n
95
LEU
95
A
PRO
96
n
96
PRO
96
A
ASP
97
n
97
ASP
97
A
ASP
98
n
98
ASP
98
A
ARG
99
n
99
ARG
99
A
ILE
100
n
100
ILE
100
A
THR
101
n
101
THR
101
A
VAL
102
n
102
VAL
102
A
ARG
103
n
103
ARG
103
A
GLN
104
n
104
GLN
104
A
VAL
105
n
105
VAL
105
A
MET
106
n
106
MET
106
A
SER
107
n
107
SER
107
A
HIS
108
n
108
HIS
108
A
ARG
109
n
109
ARG
109
A
SER
110
n
110
SER
110
A
GLY
111
n
111
GLY
111
A
LEU
112
n
112
LEU
112
A
TYR
113
n
113
TYR
113
A
ASP
114
n
114
ASP
114
A
TYR
115
n
115
TYR
115
A
THR
116
n
116
THR
116
A
ASN
117
n
117
ASN
117
A
ASP
118
n
118
ASP
118
A
MET
119
n
119
MET
119
A
PHE
120
n
120
PHE
120
A
ALA
121
n
121
ALA
121
A
GLN
122
n
122
GLN
122
A
THR
123
n
123
THR
123
A
VAL
124
n
124
VAL
124
A
PRO
125
n
125
PRO
125
A
GLY
126
n
126
GLY
126
A
PHE
127
n
127
PHE
127
A
GLU
128
n
128
GLU
128
A
SER
129
n
129
SER
129
A
VAL
130
n
130
VAL
130
A
ARG
131
n
131
ARG
131
A
ASN
132
n
132
ASN
132
A
LYS
133
n
133
LYS
133
A
VAL
134
n
134
VAL
134
A
PHE
135
n
135
PHE
135
A
SER
136
n
136
SER
136
A
TYR
137
n
137
TYR
137
A
GLN
138
n
138
GLN
138
A
ASP
139
n
139
ASP
139
A
LEU
140
n
140
LEU
140
A
ILE
141
n
141
ILE
141
A
THR
142
n
142
THR
142
A
LEU
143
n
143
LEU
143
A
SER
144
n
144
SER
144
A
LEU
145
n
145
LEU
145
A
LYS
146
n
146
LYS
146
A
HIS
147
n
147
HIS
147
A
GLY
148
n
148
GLY
148
A
VAL
149
n
149
VAL
149
A
THR
150
n
150
THR
150
A
ASN
151
n
151
ASN
151
A
ALA
152
n
152
ALA
152
A
PRO
153
n
153
PRO
153
A
GLY
154
n
154
GLY
154
A
ALA
155
n
155
ALA
155
A
ALA
156
n
156
ALA
156
A
TYR
157
n
157
TYR
157
A
SER
158
n
158
SER
158
A
TYR
159
n
159
TYR
159
A
SER
160
n
160
SER
160
A
ASN
161
n
161
ASN
161
A
THR
162
n
162
THR
162
A
ASN
163
n
163
ASN
163
A
PHE
164
n
164
PHE
164
A
VAL
165
n
165
VAL
165
A
VAL
166
n
166
VAL
166
A
ALA
167
n
167
ALA
167
A
GLY
168
n
168
GLY
168
A
MET
169
n
169
MET
169
A
LEU
170
n
170
LEU
170
A
ILE
171
n
171
ILE
171
A
GLU
172
n
172
GLU
172
A
LYS
173
n
173
LYS
173
A
LEU
174
n
174
LEU
174
A
THR
175
n
175
THR
175
A
GLY
176
n
176
GLY
176
A
HIS
177
n
177
HIS
177
A
SER
178
n
178
SER
178
A
VAL
179
n
179
VAL
179
A
ALA
180
n
180
ALA
180
A
THR
181
n
181
THR
181
A
GLU
182
n
182
GLU
182
A
TYR
183
n
183
TYR
183
A
GLN
184
n
184
GLN
184
A
ASN
185
n
185
ASN
185
A
ARG
186
n
186
ARG
186
A
ILE
187
n
187
ILE
187
A
PHE
188
n
188
PHE
188
A
THR
189
n
189
THR
189
A
PRO
190
n
190
PRO
190
A
LEU
191
n
191
LEU
191
A
ASN
192
n
192
ASN
192
A
LEU
193
n
193
LEU
193
A
THR
194
n
194
THR
194
A
ASP
195
n
195
ASP
195
A
THR
196
n
196
THR
196
A
PHE
197
n
197
PHE
197
A
TYR
198
n
198
TYR
198
A
VAL
199
n
199
VAL
199
A
HIS
200
n
200
HIS
200
A
PRO
201
n
201
PRO
201
A
ASP
202
n
202
ASP
202
A
THR
203
n
203
THR
203
A
VAL
204
n
204
VAL
204
A
ILE
205
n
205
ILE
205
A
PRO
206
n
206
PRO
206
A
GLY
207
n
207
GLY
207
A
THR
208
n
208
THR
208
A
HIS
209
n
209
HIS
209
A
ALA
210
n
210
ALA
210
A
ASN
211
n
211
ASN
211
A
GLY
212
n
212
GLY
212
A
TYR
213
n
213
TYR
213
A
LEU
214
n
214
LEU
214
A
THR
215
n
215
THR
215
A
PRO
216
n
216
PRO
216
A
ASP
217
n
217
ASP
217
A
GLU
218
n
218
GLU
218
A
ALA
219
n
219
ALA
219
A
GLY
220
n
220
GLY
220
A
GLY
221
n
221
GLY
221
A
ALA
222
n
222
ALA
222
A
LEU
223
n
223
LEU
223
A
VAL
224
n
224
VAL
224
A
ASP
225
n
225
ASP
225
A
SER
226
n
226
SER
226
A
THR
227
n
227
THR
227
A
GLU
228
n
228
GLU
228
A
GLN
229
n
229
GLN
229
A
THR
230
n
230
THR
230
A
VAL
231
n
231
VAL
231
A
SER
232
n
232
SER
232
A
TRP
233
n
233
TRP
233
A
ALA
234
n
234
ALA
234
A
GLN
235
n
235
GLN
235
A
SER
236
n
236
SER
236
A
ALA
237
n
237
ALA
237
A
GLY
238
n
238
GLY
238
A
ALA
239
n
239
ALA
239
A
VAL
240
n
240
VAL
240
A
ILE
241
n
241
ILE
241
A
SER
242
n
242
SER
242
A
SER
243
n
243
SER
243
A
THR
244
n
244
THR
244
A
GLN
245
n
245
GLN
245
A
ASP
246
n
246
ASP
246
A
LEU
247
n
247
LEU
247
A
ASP
248
n
248
ASP
248
A
THR
249
n
249
THR
249
A
PHE
250
n
250
PHE
250
A
PHE
251
n
251
PHE
251
A
SER
252
n
252
SER
252
A
ALA
253
n
253
ALA
253
A
LEU
254
n
254
LEU
254
A
MET
255
n
255
MET
255
A
SER
256
n
256
SER
256
A
GLY
257
n
257
GLY
257
A
GLN
258
n
258
GLN
258
A
LEU
259
n
259
LEU
259
A
MET
260
n
260
MET
260
A
SER
261
n
261
SER
261
A
ALA
262
n
262
ALA
262
A
ALA
263
n
263
ALA
263
A
GLN
264
n
264
GLN
264
A
LEU
265
n
265
LEU
265
A
ALA
266
n
266
ALA
266
A
GLN
267
n
267
GLN
267
A
MET
268
n
268
MET
268
A
GLN
269
n
269
GLN
269
A
GLN
270
n
270
GLN
270
A
TRP
271
n
271
TRP
271
A
THR
272
n
272
THR
272
A
THR
273
n
273
THR
273
A
VAL
274
n
274
VAL
274
A
ASN
275
n
275
ASN
275
A
SER
276
n
276
SER
276
A
THR
277
n
277
THR
277
A
GLN
278
n
278
GLN
278
A
GLY
279
n
279
GLY
279
A
TYR
280
n
280
TYR
280
A
GLY
281
n
281
GLY
281
A
LEU
282
n
282
LEU
282
A
GLY
283
n
283
GLY
283
A
LEU
284
n
284
LEU
284
A
ARG
285
n
285
ARG
285
A
ARG
286
n
286
ARG
286
A
ARG
287
n
287
ARG
287
A
ASP
288
n
288
ASP
288
A
LEU
289
n
289
LEU
289
A
SER
290
n
290
SER
290
A
CYS
291
n
291
CYS
291
A
GLY
292
n
292
GLY
292
A
ILE
293
n
293
ILE
293
A
SER
294
n
294
SER
294
A
VAL
295
n
295
VAL
295
A
TYR
296
n
296
TYR
296
A
GLY
297
n
297
GLY
297
A
HIS
298
n
298
HIS
298
A
THR
299
n
299
THR
299
A
GLY
300
n
300
GLY
300
A
THR
301
n
301
THR
301
A
VAL
302
n
302
VAL
302
A
GLN
303
n
303
GLN
303
A
GLY
304
n
304
GLY
304
A
TYR
305
n
305
TYR
305
A
TYR
306
n
306
TYR
306
A
THR
307
n
307
THR
307
A
TYR
308
n
308
TYR
308
A
ALA
309
n
309
ALA
309
A
PHE
310
n
310
PHE
310
A
ALA
311
n
311
ALA
311
A
SER
312
n
312
SER
312
A
LYS
313
n
313
LYS
313
A
ASP
314
n
314
ASP
314
A
GLY
315
n
315
GLY
315
A
LYS
316
n
316
LYS
316
A
ARG
317
n
317
ARG
317
A
SER
318
n
318
SER
318
A
VAL
319
n
319
VAL
319
A
THR
320
n
320
THR
320
A
ALA
321
n
321
ALA
321
A
LEU
322
n
322
LEU
322
A
ALA
323
n
323
ALA
323
A
ASN
324
n
324
ASN
324
A
THR
325
n
325
THR
325
A
SER
326
n
326
SER
326
A
ASN
327
n
327
ASN
327
A
ASN
328
n
328
ASN
328
A
VAL
329
n
329
VAL
329
A
ASN
330
n
330
ASN
330
A
VAL
331
n
331
VAL
331
A
LEU
332
n
332
LEU
332
A
ASN
333
n
333
ASN
333
A
THR
334
n
334
THR
334
A
MET
335
n
335
MET
335
A
ALA
336
n
336
ALA
336
A
ARG
337
n
337
ARG
337
A
THR
338
n
338
THR
338
A
LEU
339
n
339
LEU
339
A
GLU
340
n
340
GLU
340
A
SER
341
n
341
SER
341
A
ALA
342
n
342
ALA
342
A
PHE
343
n
343
PHE
343
A
CYS
344
n
344
CYS
344
A
GLY
345
n
345
GLY
345
A
LYS
346
n
346
LYS
346
A
PRO
347
n
347
PRO
347
A
n
348
348
A
n
349
349
A
0.0953
0.1094
0.095
0.1112
0.137
0.1549
3317
4463
5.
5.
63150
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
41
A
N
GLU
41
A
O
ALA
26
A
O
ALA
26
A
N
ASP
31
A
N
ASP
31
A
O
SER
318
A
O
SER
318
A
O
ALA
323
A
O
ALA
323
A
N
TYR
306
A
N
TYR
306
A
N
ALA
311
A
N
ALA
311
A
O
TYR
296
A
O
TYR
296
A
O
GLY
297
A
O
GLY
297
A
N
ARG
285
A
N
ARG
285
A
N
ARG
286
A
N
ARG
286
A
O
GLY
279
A
O
GLY
279
A
O
TYR
280
A
O
TYR
280
A
N
THR
272
A
N
THR
272
A
O
PHE
58
A
O
PHE
58
A
N
SER
242
A
N
SER
242
A
O
VAL
224
A
O
VAL
224
A
N
LEU
214
A
N
LEU
214
A
O
TYR
213
A
O
TYR
213
A
N
SER
326
A
N
SER
326
1
A
ALA
1
A
ALA
1
1
Y
1
A
ASP
2
A
ASP
2
1
Y
1
A
THR
348
A
THR
348
1
Y
1
A
THR
349
A
THR
349
1
Y
1
A
A
CA
O
DAL
HOH
500
1590
1.98
1
A
A
C6
O
REY
HOH
400
1590
2.15
1
A
A
C8
O
REY
HOH
400
1590
2.15
1
-7.62
0.50
120.30
112.68
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
29
29
29
N
1
7.45
0.90
118.30
125.75
A
A
A
CB
CG
OD1
ASP
ASP
ASP
31
31
31
B
B
B
N
1
-3.73
0.50
120.30
116.57
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
50
50
50
N
1
23.95
1.40
123.60
147.55
A
A
A
CD
NE
CZ
ARG
ARG
ARG
99
99
99
N
1
4.35
0.50
120.30
124.65
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
99
99
99
N
1
-3.13
0.50
120.30
117.17
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
131
131
131
N
1
-16.73
2.10
122.30
105.57
A
A
A
C
N
CA
HIS
GLY
GLY
147
148
148
Y
1
3.78
0.60
121.00
124.78
A
A
A
CB
CG
CD1
TYR
TYR
TYR
183
183
183
N
1
-3.94
0.50
120.30
116.36
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
286
286
286
N
1
-5.31
0.50
120.30
114.99
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
287
287
287
N
1
-4.23
0.50
120.30
116.07
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
337
337
337
N
1
A
ILE
187
-133.74
-58.06
1
A
GLN
235
54.58
-120.29
1
A
ASN
324
-90.61
51.90
THE ESTIMATED STANDARD
DEVIATION OF ATOMIC COORDINATES FOR ALL ATOMS IS 0.045
ANGSTROMS DETERMINED BY INVERSION OF THE LEAST-SQUARES
MATRIX.
0.154
0.1112
0.1094
1.25
10.00
29573
4463
89053
84590
35362
5.
89.1
RANDOM
1
ANISOTROPIC
FREE R
0.0
FOURIER SYNTHESIS
PDB ENTRY 3PTE
ENGH AND HUBER
MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228
26
0.
3215.
1.25
10.00
587
3216
27
0
2602
0.01
0.02
0.00
0.032
0.07
0.08
0.02
0.00
0.03
0.10
0.172
1.29
284
5677
67
1.25
20
1IKI
95204
92030
2
2
0.069
1
17.2
5.6
96.7
1.25
1.29
2.0
7323
0.178
1
2
77.8
refinement
SHELXL-97
data scaling
SCALEPACK
refinement
CNS
data reduction
DENZO
phasing
CNS
COMPLEX OF STREPTOMYCES R61 DD-PEPTIDASE WITH THE PRODUCTS OF A SPECIFIC PEPTIDOGLYCAN SUBSTRATE FRAGMENT
1
N
N
2
N
N
3
N
N
4
N
N
A
ASP
7
A
ASP
7
HELX_P
A
GLN
21
A
GLN
21
1
1
15
A
VAL
63
A
VAL
63
HELX_P
A
GLU
78
A
GLU
78
1
2
16
A
SER
86
A
SER
86
HELX_P
A
LEU
91
A
LEU
91
1
3
6
A
THR
101
A
THR
101
HELX_P
A
SER
107
A
SER
107
1
4
7
A
TYR
115
A
TYR
115
HELX_P
A
PHE
120
A
PHE
120
1
5
6
A
GLN
122
A
GLN
122
HELX_P
A
ARG
131
A
ARG
131
1
6
10
A
SER
136
A
SER
136
HELX_P
A
LYS
146
A
LYS
146
1
7
11
A
SER
160
A
SER
160
HELX_P
A
GLY
176
A
GLY
176
1
8
17
A
SER
178
A
SER
178
HELX_P
A
ILE
187
A
ILE
187
1
9
10
A
ALA
234
A
ALA
234
HELX_P
A
GLY
238
A
GLY
238
5
10
5
A
SER
243
A
SER
243
HELX_P
A
SER
256
A
SER
256
1
11
14
A
SER
261
A
SER
261
HELX_P
A
GLN
269
A
GLN
269
1
12
9
A
ASN
328
A
ASN
328
HELX_P
A
CYS
344
A
CYS
344
1
13
17
disulf
2.097
A
CYS
291
A
SG
CYS
291
1_555
A
CYS
344
A
SG
CYS
344
1_555
HYDROLASE
PRODUCTS COMPLEX, PEPTIDOGLYCAN, PENICILLIN BINDING PROTEIN, HYDROLASE
A
HIS
200
A
HIS
200
1
A
PRO
201
A
PRO
201
1.69
DAC_STRSR
UNP
1
32
P15555
ADLPAPDDTGLQAVLHTALSQGAPGAMVRVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGK
LDLDASVNTYLPGLLPDDRITVRQVMSHRSGLYDYTNDMFAQTVPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYS
NTNFVVAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYVHPDTVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAV
ISSTQDLDTFFSALMSGQLMSAAQLAQMQQWTTVNSTQGYGLGLRRRDLSCGISVYGHTGTVQGYYTYAFASKDGKRSVT
ALANTSNNVNVLNTMARTLESAFCGKPTT
32
380
1IKI
1
349
P15555
A
1
1
349
8
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
THR
35
A
THR
35
A
GLY
42
A
GLY
42
A
GLY
25
A
GLY
25
A
ASP
32
A
ASP
32
A
ARG
317
A
ARG
317
A
ALA
323
A
ALA
323
A
TYR
306
A
TYR
306
A
ALA
311
A
ALA
311
A
SER
294
A
SER
294
A
GLY
300
A
GLY
300
A
ARG
285
A
ARG
285
A
ASP
288
A
ASP
288
A
GLN
278
A
GLN
278
A
TYR
280
A
TYR
280
A
THR
272
A
THR
272
A
ASN
275
A
ASN
275
A
PHE
58
A
PHE
58
A
ARG
59
A
ARG
59
A
ILE
241
A
ILE
241
A
SER
242
A
SER
242
A
VAL
224
A
VAL
224
A
ASP
225
A
ASP
225
A
TYR
213
A
TYR
213
A
LEU
214
A
LEU
214
A
THR
325
A
THR
325
A
SER
326
A
SER
326
BINDING SITE FOR RESIDUE REY A 400
A
REY
400
Software
23
BINDING SITE FOR RESIDUE DAL A 500
A
DAL
500
Software
10
A
GLY
61
A
GLY
61
23
1_555
A
SER
62
A
SER
62
23
1_555
A
LYS
65
A
LYS
65
23
1_555
A
ARG
99
A
ARG
99
23
4_546
A
PHE
120
A
PHE
120
23
1_555
A
THR
123
A
THR
123
23
1_555
A
TYR
159
A
TYR
159
23
1_555
A
ASN
161
A
ASN
161
23
1_555
A
LEU
214
A
LEU
214
23
1_555
A
TRP
233
A
TRP
233
23
1_555
A
ALA
234
A
ALA
234
23
1_555
A
ALA
237
A
ALA
237
23
1_555
A
GLY
238
A
GLY
238
23
1_555
A
THR
301
A
THR
301
23
1_555
A
GLN
303
A
GLN
303
23
1_555
A
SER
326
A
SER
326
23
1_555
A
ASN
327
A
ASN
327
23
1_555
A
HOH
1023
D
HOH
23
1_555
A
HOH
1057
D
HOH
23
1_555
A
HOH
1135
D
HOH
23
4_546
A
HOH
1481
D
HOH
23
4_546
A
HOH
1590
D
HOH
23
1_555
A
HOH
1591
D
HOH
23
1_555
A
SER
62
A
SER
62
10
1_555
A
TYR
159
A
TYR
159
10
1_555
A
ARG
285
A
ARG
285
10
1_555
A
HIS
298
A
HIS
298
10
1_555
A
THR
299
A
THR
299
10
1_555
A
GLY
300
A
GLY
300
10
1_555
A
THR
301
A
THR
301
10
1_555
A
HOH
1214
D
HOH
10
4_546
A
HOH
1343
D
HOH
10
1_555
A
HOH
1590
D
HOH
10
1_555
19
P 21 21 21