0.016868
0.009739
0.000000
0.000000
0.019478
0.000000
0.000000
0.000000
0.005922
0.00000
0.00000
0.00000
Toth, J.
Cutforth, T.
Gelinas, A.D.
Bethoney, K.A.
Bard, J.
Harrison, C.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90
90
120
59.283
59.283
168.868
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Dev.Cell
1534-5807
1
83
92
10.1016/S1534-5807(01)00002-8
11703926
Crystal structure of an ephrin ectodomain.
2001
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
double mirrors
CCD
2000-02-02
SBC-2
Two Rosenbaum-Rock monochromators double crystal
SINGLE WAVELENGTH
M
x-ray
1
1.033
1.0
19-ID
APS
1.033
SYNCHROTRON
APS BEAMLINE 19-ID
19898.439
EPHRIN-B2
ECTODOMAIN, RESIDUES 30-207
1
man
polymer
586.542
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
18.015
water
201
nat
water
EPH-RELATED RECEPTOR TYROSINE KINASE LIGAND 5, LERK-5, HTK LIGAND, HTK-L, ELF-2
no
no
SIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQ
DVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSARNHGPTRRPELE
AGTNGRSSTTSPFVKPNP
SIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQ
DVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSARNHGPTRRPELE
AGTNGRSSTTSPFVKPNP
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Pichia
sample
ephrin-B2
10090
Mus musculus
4922
Pichia pastoris
plasmid
PIC-Zalpha
1
2.16
43
VAPOR DIFFUSION, HANGING DROP
8.5
magnesium chloride, PEG 4000, trishydroxyethylmethane, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
277.0
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_special_symmetry
pdbx_validate_close_contact
struct_asym
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
1
0
2002-05-03
1
1
2008-04-27
1
2
2011-07-13
2
0
2020-07-29
_atom_site.auth_asym_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_validate_close_contact.auth_asym_id_1
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_label_asym_id
A
NAG
1
n
A
NAG
1
A
NAG
2
n
A
NAG
2
A
MAN
3
n
A
MAN
3
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
SEQUENCE
SOME AMBIGUITY IN THE EXACT C-TERMINUS SEQUENCE EXISTS
DUE TO A GLU-C DIGEST.
RCSB
Y
RCSB
2001-05-03
REL
oligosaccharide
DManpa1-4DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-1-2/a4-b1_b4-c1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-Manp]{}}}}
2
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O4
MAN
NAG
3
2
2
O1
HO4
sing
n
n
n
HOH
water
WAT
1
3
HOH
HOH
208
P
WAT
2
3
HOH
HOH
209
P
WAT
3
3
HOH
HOH
210
P
WAT
4
3
HOH
HOH
211
P
WAT
5
3
HOH
HOH
212
P
WAT
6
3
HOH
HOH
213
P
WAT
7
3
HOH
HOH
214
P
WAT
8
3
HOH
HOH
215
P
WAT
9
3
HOH
HOH
216
P
WAT
10
3
HOH
HOH
217
P
WAT
11
3
HOH
HOH
218
P
WAT
12
3
HOH
HOH
219
P
WAT
13
3
HOH
HOH
220
P
WAT
14
3
HOH
HOH
221
P
WAT
15
3
HOH
HOH
222
P
WAT
16
3
HOH
HOH
223
P
WAT
17
3
HOH
HOH
224
P
WAT
18
3
HOH
HOH
225
P
WAT
19
3
HOH
HOH
226
P
WAT
20
3
HOH
HOH
227
P
WAT
21
3
HOH
HOH
228
P
WAT
22
3
HOH
HOH
229
P
WAT
23
3
HOH
HOH
230
P
WAT
24
3
HOH
HOH
231
P
WAT
25
3
HOH
HOH
232
P
WAT
26
3
HOH
HOH
233
P
WAT
27
3
HOH
HOH
234
P
WAT
28
3
HOH
HOH
235
P
WAT
29
3
HOH
HOH
236
P
WAT
30
3
HOH
HOH
237
P
WAT
31
3
HOH
HOH
238
P
WAT
32
3
HOH
HOH
239
P
WAT
33
3
HOH
HOH
240
P
WAT
34
3
HOH
HOH
241
P
WAT
35
3
HOH
HOH
242
P
WAT
36
3
HOH
HOH
243
P
WAT
37
3
HOH
HOH
244
P
WAT
38
3
HOH
HOH
245
P
WAT
39
3
HOH
HOH
246
P
WAT
40
3
HOH
HOH
247
P
WAT
41
3
HOH
HOH
248
P
WAT
42
3
HOH
HOH
249
P
WAT
43
3
HOH
HOH
250
P
WAT
44
3
HOH
HOH
251
P
WAT
45
3
HOH
HOH
252
P
WAT
46
3
HOH
HOH
253
P
WAT
47
3
HOH
HOH
254
P
WAT
48
3
HOH
HOH
255
P
WAT
49
3
HOH
HOH
256
P
WAT
50
3
HOH
HOH
257
P
WAT
51
3
HOH
HOH
258
P
WAT
52
3
HOH
HOH
259
P
WAT
53
3
HOH
HOH
260
P
WAT
54
3
HOH
HOH
261
P
WAT
55
3
HOH
HOH
262
P
WAT
56
3
HOH
HOH
263
P
WAT
57
3
HOH
HOH
264
P
WAT
58
3
HOH
HOH
265
P
WAT
59
3
HOH
HOH
266
P
WAT
60
3
HOH
HOH
267
P
WAT
61
3
HOH
HOH
268
P
WAT
62
3
HOH
HOH
269
P
WAT
63
3
HOH
HOH
270
P
WAT
64
3
HOH
HOH
271
P
WAT
65
3
HOH
HOH
272
P
WAT
66
3
HOH
HOH
273
P
WAT
67
3
HOH
HOH
274
P
WAT
68
3
HOH
HOH
275
P
WAT
69
3
HOH
HOH
276
P
WAT
70
3
HOH
HOH
277
P
WAT
71
3
HOH
HOH
278
P
WAT
72
3
HOH
HOH
279
P
WAT
73
3
HOH
HOH
280
P
WAT
74
3
HOH
HOH
281
P
WAT
75
3
HOH
HOH
282
P
WAT
76
3
HOH
HOH
283
P
WAT
77
3
HOH
HOH
284
P
WAT
78
3
HOH
HOH
285
P
WAT
79
3
HOH
HOH
286
P
WAT
80
3
HOH
HOH
287
P
WAT
81
3
HOH
HOH
288
P
WAT
82
3
HOH
HOH
289
P
WAT
83
3
HOH
HOH
290
P
WAT
84
3
HOH
HOH
291
P
WAT
85
3
HOH
HOH
292
P
WAT
86
3
HOH
HOH
293
P
WAT
87
3
HOH
HOH
294
P
WAT
88
3
HOH
HOH
295
P
WAT
89
3
HOH
HOH
296
P
WAT
90
3
HOH
HOH
297
P
WAT
91
3
HOH
HOH
298
P
WAT
92
3
HOH
HOH
299
P
WAT
93
3
HOH
HOH
300
P
WAT
94
3
HOH
HOH
301
P
WAT
95
3
HOH
HOH
302
P
WAT
96
3
HOH
HOH
303
P
WAT
97
3
HOH
HOH
304
P
WAT
98
3
HOH
HOH
305
P
WAT
99
3
HOH
HOH
306
P
WAT
100
3
HOH
HOH
307
P
WAT
101
3
HOH
HOH
308
P
WAT
102
3
HOH
HOH
309
P
WAT
103
3
HOH
HOH
310
P
WAT
104
3
HOH
HOH
311
P
WAT
105
3
HOH
HOH
312
P
WAT
106
3
HOH
HOH
313
P
WAT
107
3
HOH
HOH
314
P
WAT
108
3
HOH
HOH
315
P
WAT
109
3
HOH
HOH
316
P
WAT
110
3
HOH
HOH
317
P
WAT
111
3
HOH
HOH
318
P
WAT
112
3
HOH
HOH
319
P
WAT
113
3
HOH
HOH
320
P
WAT
115
3
HOH
HOH
321
P
WAT
116
3
HOH
HOH
322
P
WAT
117
3
HOH
HOH
323
P
WAT
118
3
HOH
HOH
324
P
WAT
119
3
HOH
HOH
325
P
WAT
120
3
HOH
HOH
326
P
WAT
121
3
HOH
HOH
327
P
WAT
122
3
HOH
HOH
328
P
WAT
123
3
HOH
HOH
329
P
WAT
124
3
HOH
HOH
330
P
WAT
125
3
HOH
HOH
331
P
WAT
126
3
HOH
HOH
332
P
WAT
127
3
HOH
HOH
333
P
WAT
128
3
HOH
HOH
334
P
WAT
129
3
HOH
HOH
335
P
WAT
130
3
HOH
HOH
336
P
WAT
131
3
HOH
HOH
337
P
WAT
132
3
HOH
HOH
338
P
WAT
133
3
HOH
HOH
339
P
WAT
134
3
HOH
HOH
340
P
WAT
135
3
HOH
HOH
341
P
WAT
136
3
HOH
HOH
342
P
WAT
137
3
HOH
HOH
343
P
WAT
138
3
HOH
HOH
344
P
WAT
139
3
HOH
HOH
345
P
WAT
140
3
HOH
HOH
346
P
WAT
141
3
HOH
HOH
347
P
WAT
142
3
HOH
HOH
348
P
WAT
143
3
HOH
HOH
349
P
WAT
144
3
HOH
HOH
350
P
WAT
145
3
HOH
HOH
351
P
WAT
146
3
HOH
HOH
352
P
WAT
147
3
HOH
HOH
353
P
WAT
148
3
HOH
HOH
354
P
WAT
149
3
HOH
HOH
355
P
WAT
150
3
HOH
HOH
356
P
WAT
151
3
HOH
HOH
357
P
WAT
152
3
HOH
HOH
358
P
WAT
153
3
HOH
HOH
359
P
WAT
154
3
HOH
HOH
360
P
WAT
155
3
HOH
HOH
361
P
WAT
156
3
HOH
HOH
362
P
WAT
157
3
HOH
HOH
363
P
WAT
158
3
HOH
HOH
364
P
WAT
159
3
HOH
HOH
365
P
WAT
160
3
HOH
HOH
366
P
WAT
161
3
HOH
HOH
367
P
WAT
162
3
HOH
HOH
368
P
WAT
163
3
HOH
HOH
369
P
WAT
164
3
HOH
HOH
370
P
WAT
165
3
HOH
HOH
371
P
WAT
166
3
HOH
HOH
372
P
WAT
167
3
HOH
HOH
373
P
WAT
168
3
HOH
HOH
374
P
WAT
169
3
HOH
HOH
375
P
WAT
170
3
HOH
HOH
376
P
WAT
171
3
HOH
HOH
377
P
WAT
172
3
HOH
HOH
378
P
WAT
173
3
HOH
HOH
379
P
WAT
174
3
HOH
HOH
380
P
WAT
175
3
HOH
HOH
381
P
WAT
176
3
HOH
HOH
382
P
WAT
177
3
HOH
HOH
383
P
WAT
178
3
HOH
HOH
384
P
WAT
179
3
HOH
HOH
385
P
WAT
180
3
HOH
HOH
386
P
WAT
181
3
HOH
HOH
387
P
WAT
182
3
HOH
HOH
388
P
WAT
183
3
HOH
HOH
389
P
WAT
184
3
HOH
HOH
390
P
WAT
185
3
HOH
HOH
391
P
WAT
186
3
HOH
HOH
392
P
WAT
187
3
HOH
HOH
393
P
WAT
188
3
HOH
HOH
394
P
WAT
189
3
HOH
HOH
395
P
WAT
190
3
HOH
HOH
396
P
WAT
191
3
HOH
HOH
397
P
WAT
192
3
HOH
HOH
398
P
WAT
193
3
HOH
HOH
399
P
WAT
194
3
HOH
HOH
400
P
WAT
195
3
HOH
HOH
401
P
WAT
196
3
HOH
HOH
402
P
WAT
197
3
HOH
HOH
403
P
WAT
198
3
HOH
HOH
404
P
WAT
199
3
HOH
HOH
405
P
WAT
200
3
HOH
HOH
406
P
WAT
201
3
HOH
HOH
407
P
WAT
202
3
HOH
HOH
408
P
SER
30
n
1
SER
30
P
ILE
31
n
2
ILE
31
P
VAL
32
n
3
VAL
32
P
LEU
33
n
4
LEU
33
P
GLU
34
n
5
GLU
34
P
PRO
35
n
6
PRO
35
P
ILE
36
n
7
ILE
36
P
TYR
37
n
8
TYR
37
P
TRP
38
n
9
TRP
38
P
ASN
39
n
10
ASN
39
P
SER
40
n
11
SER
40
P
SER
41
n
12
SER
41
P
ASN
42
n
13
ASN
42
P
SER
43
n
14
SER
43
P
LYS
44
n
15
LYS
44
P
PHE
45
n
16
PHE
45
P
LEU
46
n
17
LEU
46
P
PRO
47
n
18
PRO
47
P
GLY
48
n
19
GLY
48
P
GLN
49
n
20
GLN
49
P
GLY
50
n
21
GLY
50
P
LEU
51
n
22
LEU
51
P
VAL
52
n
23
VAL
52
P
LEU
53
n
24
LEU
53
P
TYR
54
n
25
TYR
54
P
PRO
55
n
26
PRO
55
P
GLN
56
n
27
GLN
56
P
ILE
57
n
28
ILE
57
P
GLY
58
n
29
GLY
58
P
ASP
59
n
30
ASP
59
P
LYS
60
n
31
LYS
60
P
LEU
61
n
32
LEU
61
P
ASP
62
n
33
ASP
62
P
ILE
63
n
34
ILE
63
P
ILE
64
n
35
ILE
64
P
CYS
65
n
36
CYS
65
P
PRO
66
n
37
PRO
66
P
LYS
67
n
38
LYS
67
P
VAL
68
n
39
VAL
68
P
ASP
69
n
40
ASP
69
P
SER
70
n
41
SER
70
P
LYS
71
n
42
LYS
71
P
THR
72
n
43
THR
72
P
VAL
73
n
44
VAL
73
P
GLY
74
n
45
GLY
74
P
GLN
75
n
46
GLN
75
P
TYR
76
n
47
TYR
76
P
GLU
77
n
48
GLU
77
P
TYR
78
n
49
TYR
78
P
TYR
79
n
50
TYR
79
P
LYS
80
n
51
LYS
80
P
VAL
81
n
52
VAL
81
P
TYR
82
n
53
TYR
82
P
MET
83
n
54
MET
83
P
VAL
84
n
55
VAL
84
P
ASP
85
n
56
ASP
85
P
LYS
86
n
57
LYS
86
P
ASP
87
n
58
ASP
87
P
GLN
88
n
59
GLN
88
P
ALA
89
n
60
ALA
89
P
ASP
90
n
61
ASP
90
P
ARG
91
n
62
ARG
91
P
CYS
92
n
63
CYS
92
P
THR
93
n
64
THR
93
P
ILE
94
n
65
ILE
94
P
LYS
95
n
66
LYS
95
P
LYS
96
n
67
LYS
96
P
GLU
97
n
68
GLU
97
P
ASN
98
n
69
ASN
98
P
THR
99
n
70
THR
99
P
PRO
100
n
71
PRO
100
P
LEU
101
n
72
LEU
101
P
LEU
102
n
73
LEU
102
P
ASN
103
n
74
ASN
103
P
CYS
104
n
75
CYS
104
P
ALA
105
n
76
ALA
105
P
ARG
106
n
77
ARG
106
P
PRO
107
n
78
PRO
107
P
ASP
108
n
79
ASP
108
P
GLN
109
n
80
GLN
109
P
ASP
110
n
81
ASP
110
P
VAL
111
n
82
VAL
111
P
LYS
112
n
83
LYS
112
P
PHE
113
n
84
PHE
113
P
THR
114
n
85
THR
114
P
ILE
115
n
86
ILE
115
P
LYS
116
n
87
LYS
116
P
PHE
117
n
88
PHE
117
P
GLN
118
n
89
GLN
118
P
GLU
119
n
90
GLU
119
P
PHE
120
n
91
PHE
120
P
SER
121
n
92
SER
121
P
PRO
122
n
93
PRO
122
P
ASN
123
n
94
ASN
123
P
LEU
124
n
95
LEU
124
P
TRP
125
n
96
TRP
125
P
GLY
126
n
97
GLY
126
P
LEU
127
n
98
LEU
127
P
GLU
128
n
99
GLU
128
P
PHE
129
n
100
PHE
129
P
GLN
130
n
101
GLN
130
P
LYS
131
n
102
LYS
131
P
ASN
132
n
103
ASN
132
P
LYS
133
n
104
LYS
133
P
ASP
134
n
105
ASP
134
P
TYR
135
n
106
TYR
135
P
TYR
136
n
107
TYR
136
P
ILE
137
n
108
ILE
137
P
ILE
138
n
109
ILE
138
P
SER
139
n
110
SER
139
P
THR
140
n
111
THR
140
P
SER
141
n
112
SER
141
P
ASN
142
n
113
ASN
142
P
GLY
143
n
114
GLY
143
P
SER
144
n
115
SER
144
P
LEU
145
n
116
LEU
145
P
GLU
146
n
117
GLU
146
P
GLY
147
n
118
GLY
147
P
LEU
148
n
119
LEU
148
P
ASP
149
n
120
ASP
149
P
ASN
150
n
121
ASN
150
P
GLN
151
n
122
GLN
151
P
GLU
152
n
123
GLU
152
P
GLY
153
n
124
GLY
153
P
GLY
154
n
125
GLY
154
P
VAL
155
n
126
VAL
155
P
CYS
156
n
127
CYS
156
P
GLN
157
n
128
GLN
157
P
THR
158
n
129
THR
158
P
ARG
159
n
130
ARG
159
P
ALA
160
n
131
ALA
160
P
MET
161
n
132
MET
161
P
LYS
162
n
133
LYS
162
P
ILE
163
n
134
ILE
163
P
LEU
164
n
135
LEU
164
P
MET
165
n
136
MET
165
P
LYS
166
n
137
LYS
166
P
VAL
167
n
138
VAL
167
P
GLY
168
n
139
GLY
168
P
GLN
169
n
140
GLN
169
P
ASP
170
n
141
ASP
170
P
n
142
171
P
n
143
172
P
n
144
173
P
n
145
174
P
n
146
175
P
n
147
176
P
n
148
177
P
n
149
178
P
n
150
179
P
n
151
180
P
n
152
181
P
n
153
182
P
n
154
183
P
n
155
184
P
n
156
185
P
n
157
186
P
n
158
187
P
n
159
188
P
n
160
189
P
n
161
190
P
n
162
191
P
n
163
192
P
n
164
193
P
n
165
194
P
n
166
195
P
n
167
196
P
n
168
197
P
n
169
198
P
n
170
199
P
n
171
200
P
n
172
201
P
n
173
202
P
n
174
203
P
n
175
204
P
n
176
205
P
n
177
206
P
n
178
207
P
author_defined_assembly
1
monomeric
P
ASN
39
GLYCOSYLATION SITE
A
ASN
10
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
P
N
ILE
36
A
N
ILE
7
P
O
ASP
62
A
O
ASP
33
P
O
ILE
63
A
O
ILE
34
P
N
PHE
113
A
N
PHE
84
P
N
LEU
51
A
N
LEU
22
P
O
LYS
162
A
O
LYS
133
P
N
VAL
167
A
N
VAL
138
P
O
LYS
133
A
O
LYS
104
P
O
ILE
138
A
O
ILE
109
P
N
TYR
82
A
N
TYR
53
P
N
VAL
81
A
N
VAL
52
P
O
LEU
102
A
O
LEU
73
1
P
HOH
293
C
HOH
1
P
HOH
299
C
HOH
1
P
HOH
326
C
HOH
1
P
HOH
395
C
HOH
1
P
CD
LYS
95
A
CD
LYS
66
1
Y
1
P
CE
LYS
95
A
CE
LYS
66
1
Y
1
P
NZ
LYS
95
A
NZ
LYS
66
1
Y
1
P
CB
LYS
96
A
CB
LYS
67
1
Y
1
P
CG
LYS
96
A
CG
LYS
67
1
Y
1
P
CD
LYS
96
A
CD
LYS
67
1
Y
1
P
CE
LYS
96
A
CE
LYS
67
1
Y
1
P
NZ
LYS
96
A
NZ
LYS
67
1
Y
1
P
CE
LYS
133
A
CE
LYS
104
1
Y
1
P
NZ
LYS
133
A
NZ
LYS
104
1
Y
1
P
ALA
171
A
ALA
142
1
Y
1
P
SER
172
A
SER
143
1
Y
1
P
SER
173
A
SER
144
1
Y
1
P
ALA
174
A
ALA
145
1
Y
1
P
GLY
175
A
GLY
146
1
Y
1
P
SER
176
A
SER
147
1
Y
1
P
ALA
177
A
ALA
148
1
Y
1
P
ARG
178
A
ARG
149
1
Y
1
P
ASN
179
A
ASN
150
1
Y
1
P
HIS
180
A
HIS
151
1
Y
1
P
GLY
181
A
GLY
152
1
Y
1
P
PRO
182
A
PRO
153
1
Y
1
P
THR
183
A
THR
154
1
Y
1
P
ARG
184
A
ARG
155
1
Y
1
P
ARG
185
A
ARG
156
1
Y
1
P
PRO
186
A
PRO
157
1
Y
1
P
GLU
187
A
GLU
158
1
Y
1
P
LEU
188
A
LEU
159
1
Y
1
P
GLU
189
A
GLU
160
1
Y
1
P
ALA
190
A
ALA
161
1
Y
1
P
GLY
191
A
GLY
162
1
Y
1
P
THR
192
A
THR
163
1
Y
1
P
ASN
193
A
ASN
164
1
Y
1
P
GLY
194
A
GLY
165
1
Y
1
P
ARG
195
A
ARG
166
1
Y
1
P
SER
196
A
SER
167
1
Y
1
P
SER
197
A
SER
168
1
Y
1
P
THR
198
A
THR
169
1
Y
1
P
THR
199
A
THR
170
1
Y
1
P
SER
200
A
SER
171
1
Y
1
P
PRO
201
A
PRO
172
1
Y
1
P
PHE
202
A
PHE
173
1
Y
1
P
VAL
203
A
VAL
174
1
Y
1
P
LYS
204
A
LYS
175
1
Y
1
P
PRO
205
A
PRO
176
1
Y
1
P
ASN
206
A
ASN
177
1
Y
1
P
PRO
207
A
PRO
178
1
Y
1
P
P
O
O
HOH
HOH
387
403
1.88
1
P
P
OG
O
SER
HOH
30
381
2.11
1
P
P
O
O
HOH
HOH
313
408
2.12
1
P
P
O
O
HOH
HOH
377
378
2.17
1
P
P
O
O
HOH
HOH
345
347
2.19
1
A
P
O4
O
MAN
HOH
3
386
2.19
1
P
ASP
69
-125.41
-113.02
37.4
3.32
2.93
.00
3.32
.00
-6.64
0.249
0.216
0.216
1.92
19.41
1410
14067
13862
97.7
random
10000
1
restrained
THROUGHOUT
2
0
SIRAS
MAXIMUM LIKELIHOOD FUNCTION
0.30
0.25
6.0
0.24
0.20
1.92
19.41
201
1360
39
0
1120
0.011
1.62
26
1.06
0.2925
0.2487
1.99
37
399
28
7.69
90.64
20.0
1.92
19.41
1IKO
13862
13862
0
0
0.042
1
48.0
22
99.5
1.92
1.99
18.0
0.219
1
10
99.8
data collection
HKL-2000
data reduction
HKL-2000
phasing
SHARP
refinement
CNS
data scaling
HKL-2000
EPHRIN-B2
CRYSTAL STRUCTURE OF THE MURINE EPHRIN-B2 ECTODOMAIN
1
N
N
2
N
N
3
N
N
P
ASP
85
A
ASP
56
HELX_P
P
CYS
92
A
CYS
63
1
1
8
P
SER
144
A
SER
115
HELX_P
P
LEU
148
A
LEU
119
5
2
5
P
GLY
153
A
GLY
124
HELX_P
P
ARG
159
A
ARG
130
1
3
7
disulf
2.039
P
CYS
65
A
SG
CYS
36
1_555
P
CYS
104
A
SG
CYS
75
1_555
disulf
2.065
P
CYS
92
A
SG
CYS
63
1_555
P
CYS
156
A
SG
CYS
127
1_555
covale
1.450
one
N-Glycosylation
P
ASN
39
A
ND2
ASN
10
1_555
A
NAG
1
B
C1
NAG
1_555
covale
1.383
both
A
NAG
1
B
O4
NAG
1_555
A
NAG
2
B
C1
NAG
1_555
covale
1.376
both
A
NAG
2
B
O4
NAG
1_555
A
MAN
3
B
C1
MAN
1_555
SIGNALING PROTEIN
GREEK KEY, GLYCOSYLATION, SIGNALING PROTEIN
EFB2_MOUSE
UNP
1
1
P52800
MAMARSRRDSVWKYCWGLLMVLCRTAISRSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYK
VYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRA
MKILMKVGQDASSAGSARNHGPTRRPELEAGTNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNLLGSEVALFAGIASGCII
FIVIIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRGGNNNGSEPSDVIIPLRTADSVFCPHYEKVSGDYGHPVYI
VQEMPPQSPANIYYKV
30
207
1IKO
30
207
P52800
P
1
1
178
3
5
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
P
ILE
36
A
ILE
7
P
TYR
37
A
TYR
8
P
LYS
60
A
LYS
31
P
ILE
64
A
ILE
35
P
LYS
112
A
LYS
83
P
LYS
116
A
LYS
87
P
LEU
51
A
LEU
22
P
LEU
53
A
LEU
24
P
LYS
162
A
LYS
133
P
VAL
167
A
VAL
138
P
LYS
133
A
LYS
104
P
ILE
138
A
ILE
109
P
TYR
79
A
TYR
50
P
VAL
84
A
VAL
55
P
LEU
102
A
LEU
73
P
CYS
104
A
CYS
75
179
P 65 2 2