0.025112
-0.014557
-0.003500
0.000000
0.028782
-0.005253
0.000000
0.000000
0.026499
0.00000
0.00000
0.00000
Hizver, J.
Rozenberg, H.
Frolow, F.
Rabinovich, D.
Shakked, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
74.42
76.44
59.90
39.821
40.160
39.460
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
8490
8495
10.1073/pnas.151247298
11438706
DNA bending by an adenine--thymine tract and its role in gene regulation.
2001
10.2210/pdb1ilc/pdb
pdb_00001ilc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Yale-type mirrors
IMAGE PLATE
1997-11-10
RIGAKU RAXIS IIC
Ni filter + Yale-type mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-C
Human papillomavirus E2 DNA target
3662.404
5'-D(*AP*CP*CP*GP*AP*AP*TP*TP*CP*GP*GP*T)-3'
6
syn
polymer
18.015
water
114
nat
water
no
no
(DA)(DC)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DG)(DT)
ACCGAATTCGGT
A,B,C,D,E,F
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
1
2.29
57
VAPOR DIFFUSION, HANGING DROP
7.0
MPD, magnesium chloride, spermine.4HCl, Na cacodylate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 292.0K
292.0
MPD
1
Mg2Cl
1
spermine.4HCl
1
Na cacodylate
1
MPD
2
-6.136
1
20
A
1
B
24
2.350
A_DA1:DT24_B
1
-11.185
-0.061
-0.218
-0.363
2.541
1
19
A
2
B
23
-0.880
A_DC2:DG23_B
2
-3.408
-0.057
-0.086
-0.288
6.339
1
19
A
3
B
22
-1.503
A_DC3:DG22_B
3
-3.304
0.270
-0.236
-0.312
11.242
1
19
A
4
B
21
-2.196
A_DG4:DC21_B
4
-10.069
-0.032
0.123
-0.195
3.673
1
20
A
5
B
20
5.796
A_DA5:DT20_B
5
-10.872
0.230
-0.016
-0.123
-1.056
1
20
A
6
B
19
1.350
A_DA6:DT19_B
6
-12.422
0.377
0.242
-0.082
-5.526
1
20
A
7
B
18
-3.800
A_DT7:DA18_B
7
-14.580
-0.065
0.338
-0.019
-17.026
1
20
A
8
B
17
0.727
A_DT8:DA17_B
8
-21.023
-0.115
0.399
-0.161
-17.746
1
19
A
9
B
16
1.812
A_DC9:DG16_B
9
0.747
0.299
0.331
-0.160
-8.070
1
19
A
10
B
15
-1.507
A_DG10:DC15_B
10
-4.628
-0.300
-0.127
-0.351
0.718
1
19
A
11
B
14
-2.909
A_DG11:DC14_B
11
-5.965
0.108
0.312
-0.300
-1.686
1
20
A
12
B
13
1.480
A_DT12:DA13_B
12
-6.868
-0.275
-0.213
-0.190
1.085
1
20
C
25
D
48
1.551
C_DA25:DT48_D
13
-5.179
-0.017
0.116
-0.097
6.705
1
19
C
26
D
47
-1.294
C_DC26:DG47_D
14
-7.956
0.238
0.165
-0.067
13.832
1
19
C
27
D
46
3.324
C_DC27:DG46_D
15
-9.279
0.303
-0.395
-0.076
10.681
1
19
C
28
D
45
4.090
C_DG28:DC45_D
16
-11.521
-0.394
-0.628
-0.187
12.072
1
20
C
29
D
44
4.856
C_DA29:DT44_D
17
-15.548
0.311
0.273
-0.014
3.465
1
20
C
30
D
43
-2.762
C_DA30:DT43_D
18
-15.571
0.415
0.425
-0.205
-2.321
1
20
C
31
D
42
-1.392
C_DT31:DA42_D
19
-16.506
-0.212
0.411
-0.236
-3.275
1
20
C
32
D
41
1.220
C_DT32:DA41_D
20
-19.599
0.108
-0.187
-0.313
-11.649
1
19
C
33
D
40
-3.726
C_DC33:DG40_D
21
-17.543
0.152
0.308
-0.197
3.218
1
19
C
34
D
39
-2.812
C_DG34:DC39_D
22
-2.922
-0.046
0.252
-0.286
0.400
1
19
C
35
D
38
-4.869
C_DG35:DC38_D
23
-16.354
-0.056
0.479
-0.304
-3.160
1
20
C
36
D
37
-1.686
C_DT36:DA37_D
24
-5.189
-0.016
0.027
-0.244
3.766
1
20
E
49
F
72
2.832
E_DA49:DT72_F
25
-3.213
-0.337
0.296
-0.292
-0.265
1
19
E
50
F
71
0.377
E_DC50:DG71_F
26
-3.687
0.248
0.292
-0.327
12.260
1
19
E
51
F
70
-5.120
E_DC51:DG70_F
27
-3.418
-0.226
-0.256
-0.305
15.351
1
19
E
52
F
69
7.574
E_DG52:DC69_F
28
-11.596
-0.186
0.233
0.205
8.481
1
20
E
53
F
68
2.302
E_DA53:DT68_F
29
-15.964
0.032
0.098
-0.193
-2.212
1
20
E
54
F
67
-0.824
E_DA54:DT67_F
30
-16.211
-0.192
0.041
-0.469
-0.146
1
20
E
55
F
66
-1.928
E_DT55:DA66_F
31
-16.588
-0.263
-0.053
-0.385
-12.220
1
20
E
56
F
65
-1.877
E_DT56:DA65_F
32
-17.777
-0.435
0.057
-0.418
-13.765
1
19
E
57
F
64
4.093
E_DC57:DG64_F
33
-7.152
-0.166
-0.215
0.067
7.400
1
19
E
58
F
63
-0.901
E_DG58:DC63_F
34
3.342
0.220
0.486
-0.315
6.323
1
19
E
59
F
62
-3.883
E_DG59:DC62_F
35
-9.742
0.166
0.389
-0.227
-8.783
1
20
E
60
F
61
-1.928
E_DT60:DA61_F
36
-6.075
0.152
0.303
-0.461
3.120
33.180
A
A
1
2
-4.533
B
B
24
23
3.106
-2.584
-0.366
-0.068
AA_DA1DC2:DG23DT24_BB
1
-2.355
4.131
33.001
0.294
0.264
3.368
34.590
A
A
2
3
4.088
B
B
23
22
3.256
2.424
0.854
0.677
AA_DC2DC3:DG22DG23_BB
2
3.892
-6.564
34.294
0.758
-0.826
3.311
35.200
A
A
3
4
7.130
B
B
22
21
3.215
4.297
-0.506
0.734
AA_DC3DG4:DC21DG22_BB
3
-3.070
5.095
34.814
0.572
0.379
3.363
38.916
A
A
4
5
0.049
B
B
21
20
3.365
0.033
0.014
-0.372
AA_DG4DA5:DT20DC21_BB
4
1.339
-2.010
38.894
-0.563
0.146
3.348
36.184
A
A
5
6
-0.038
B
B
20
19
3.351
-0.023
0.008
-0.823
AA_DA5DA6:DT19DT20_BB
5
-1.660
2.674
36.147
-1.321
-0.253
3.326
28.872
A
A
6
7
-1.118
B
B
19
18
3.279
-0.557
-0.488
-1.029
AA_DA6DT7:DA18DT19_BB
6
-2.246
4.509
28.781
-1.939
0.475
3.406
38.853
A
A
7
8
0.990
B
B
18
17
3.415
0.659
-0.171
-0.414
AA_DT7DT8:DA17DA18_BB
7
0.483
-0.726
38.844
-0.706
0.319
3.312
42.452
A
A
8
9
-2.770
B
B
17
16
3.348
-2.003
0.086
0.405
AA_DT8DC9:DG16DA17_BB
8
-3.045
4.210
42.303
0.767
-0.434
3.141
25.997
A
A
9
10
1.522
B
B
16
15
3.165
0.682
-0.057
0.712
AA_DC9DG10:DC15DG16_BB
9
3.775
-8.421
25.717
1.400
1.134
3.183
37.556
A
A
10
11
2.377
B
B
15
14
3.032
1.521
-1.011
0.429
AA_DG10DG11:DC14DC15_BB
10
-7.368
11.517
36.821
0.476
0.648
3.479
32.937
A
A
11
12
-4.149
B
B
14
13
3.411
-2.336
0.652
-0.220
AA_DG11DT12:DA13DC14_BB
11
6.491
-11.529
32.227
0.036
0.028
3.226
28.900
C
C
25
26
-0.460
D
D
48
47
3.231
-0.229
-0.041
-0.575
CC_DA25DC26:DG47DT48_DD
12
-2.576
5.167
28.786
-1.101
-0.484
3.076
33.453
C
C
26
27
5.456
D
D
47
46
3.137
3.118
0.062
-0.067
CC_DC26DC27:DG46DG47_DD
13
6.319
-11.056
32.723
-0.611
0.895
3.391
33.151
C
C
27
28
16.001
D
D
46
45
3.447
9.019
-0.767
0.358
CC_DC27DG28:DC45DG46_DD
14
1.170
-2.075
31.913
-0.989
1.554
3.101
42.128
C
C
28
29
2.506
D
D
45
44
3.165
1.796
0.363
0.154
CC_DG28DA29:DT44DC45_DD
15
-5.402
7.536
41.759
0.036
-1.041
3.390
34.944
C
C
29
30
1.075
D
D
44
43
3.399
0.644
-0.273
-0.747
CC_DA29DA30:DT43DT44_DD
16
-4.896
8.179
34.604
-1.346
-0.317
3.395
31.239
C
C
30
31
-13.312
D
D
43
42
3.289
-7.108
-0.010
-0.852
CC_DA30DT31:DA42DT43_DD
17
0.757
-1.419
30.430
-0.186
0.168
3.117
39.952
C
C
31
32
1.315
D
D
42
41
3.167
0.895
-0.042
-0.284
CC_DT31DT32:DA41DA42_DD
18
6.274
-9.218
39.466
-0.515
0.758
3.436
39.904
C
C
32
33
2.858
D
D
41
40
3.470
1.948
0.406
0.118
CC_DT32DC33:DG40DA41_DD
19
-2.874
4.216
39.759
-0.065
-0.946
3.033
29.720
C
C
33
34
13.007
D
D
40
39
2.951
6.616
-0.551
0.624
CC_DC33DG34:DC39DG40_DD
20
-1.076
2.115
28.970
-0.070
0.865
3.402
36.436
C
C
34
35
-1.181
D
D
39
38
3.367
-0.737
-0.525
0.114
CC_DG34DG35:DC38DC39_DD
21
-4.131
6.621
36.201
0.288
0.244
3.396
41.054
C
C
35
36
-12.672
D
D
38
37
3.339
-8.806
1.071
-0.163
CC_DG35DT36:DA37DC38_DD
22
4.618
-6.645
39.882
0.770
-1.001
3.588
31.969
E
E
49
50
-5.905
F
F
72
71
3.585
-3.245
-0.092
-0.216
EE_DA49DC50:DG71DT72_FF
23
-1.992
3.625
31.748
0.254
-0.229
2.793
29.728
E
E
50
51
12.989
F
F
71
70
2.921
6.552
0.187
-0.111
EE_DC50DC51:DG70DG71_FF
24
6.901
-13.682
28.197
-1.450
0.934
3.322
35.742
E
E
51
52
4.729
F
F
70
69
3.268
2.897
-0.214
0.735
EE_DC51DG52:DC69DG70_FF
25
-2.877
4.697
35.516
0.775
-0.072
3.327
40.072
E
E
52
53
0.117
F
F
69
68
3.324
0.080
-0.163
0.047
EE_DG52DA53:DT68DC69_FF
26
-1.034
1.510
40.059
0.059
0.118
3.396
37.935
E
E
53
54
-2.530
F
F
68
67
3.383
-1.644
-0.168
-0.335
EE_DA53DA54:DT67DT68_FF
27
-0.742
1.142
37.894
-0.297
0.161
3.148
29.625
E
E
54
55
1.254
F
F
67
66
3.172
0.641
-0.097
-0.970
EE_DA54DT55:DA66DT67_FF
28
0.649
-1.270
29.612
-2.028
0.322
3.539
37.370
E
E
55
56
0.879
F
F
66
65
3.543
0.563
-0.025
-0.246
EE_DT55DT56:DA65DA66_FF
29
0.319
-0.499
37.365
-0.465
0.085
3.272
41.386
E
E
56
57
1.216
F
F
65
64
3.221
0.858
0.578
0.764
EE_DT56DC57:DG64DA65_FF
30
3.596
-5.094
41.228
0.990
-0.435
2.939
34.448
E
E
57
58
3.082
F
F
64
63
2.965
1.819
0.382
1.044
EE_DC57DG58:DC63DG64_FF
31
-4.641
7.863
34.096
1.507
-1.300
3.661
35.821
E
E
58
59
3.036
F
F
63
62
3.589
1.866
-0.925
0.783
EE_DG58DG59:DC62DC63_FF
32
-1.635
2.660
35.738
0.976
1.243
3.788
36.786
E
E
59
60
-11.113
F
F
62
61
3.754
-6.968
0.869
-0.264
EE_DG59DT60:DA61DC62_FF
33
2.546
-4.061
36.055
0.687
-0.974
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2002-05-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
1
4
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2001-05-08
REL
REL
HOH
water
standard B-DNA fiber coordinates
Other
experimental model
HOH
73
2
HOH
HOH
73
A
HOH
79
2
HOH
HOH
79
A
HOH
82
2
HOH
HOH
82
A
HOH
86
2
HOH
HOH
86
A
HOH
87
2
HOH
HOH
87
A
HOH
89
2
HOH
HOH
89
A
HOH
90
2
HOH
HOH
90
A
HOH
99
2
HOH
HOH
99
A
HOH
116
2
HOH
HOH
116
A
HOH
117
2
HOH
HOH
117
A
HOH
121
2
HOH
HOH
121
A
HOH
133
2
HOH
HOH
133
A
HOH
134
2
HOH
HOH
134
A
HOH
151
2
HOH
HOH
151
A
HOH
156
2
HOH
HOH
156
A
HOH
173
2
HOH
HOH
173
A
HOH
174
2
HOH
HOH
174
A
HOH
175
2
HOH
HOH
175
A
HOH
176
2
HOH
HOH
176
A
HOH
182
2
HOH
HOH
182
A
HOH
183
2
HOH
HOH
183
A
HOH
74
2
HOH
HOH
74
B
HOH
75
2
HOH
HOH
75
B
HOH
76
2
HOH
HOH
76
B
HOH
77
2
HOH
HOH
77
B
HOH
78
2
HOH
HOH
78
B
HOH
80
2
HOH
HOH
80
B
HOH
81
2
HOH
HOH
81
B
HOH
83
2
HOH
HOH
83
B
HOH
84
2
HOH
HOH
84
B
HOH
85
2
HOH
HOH
85
B
HOH
88
2
HOH
HOH
88
B
HOH
113
2
HOH
HOH
113
B
HOH
118
2
HOH
HOH
118
B
HOH
119
2
HOH
HOH
119
B
HOH
120
2
HOH
HOH
120
B
HOH
123
2
HOH
HOH
123
B
HOH
124
2
HOH
HOH
124
B
HOH
139
2
HOH
HOH
139
B
HOH
142
2
HOH
HOH
142
B
HOH
152
2
HOH
HOH
152
B
HOH
157
2
HOH
HOH
157
B
HOH
181
2
HOH
HOH
181
B
HOH
184
2
HOH
HOH
184
B
HOH
185
2
HOH
HOH
185
B
HOH
91
2
HOH
HOH
91
C
HOH
92
2
HOH
HOH
92
C
HOH
93
2
HOH
HOH
93
C
HOH
94
2
HOH
HOH
94
C
HOH
95
2
HOH
HOH
95
C
HOH
97
2
HOH
HOH
97
C
HOH
107
2
HOH
HOH
107
C
HOH
108
2
HOH
HOH
108
C
HOH
109
2
HOH
HOH
109
C
HOH
112
2
HOH
HOH
112
C
HOH
114
2
HOH
HOH
114
C
HOH
115
2
HOH
HOH
115
C
HOH
125
2
HOH
HOH
125
C
HOH
130
2
HOH
HOH
130
C
HOH
131
2
HOH
HOH
131
C
HOH
146
2
HOH
HOH
146
C
HOH
150
2
HOH
HOH
150
C
HOH
159
2
HOH
HOH
159
C
HOH
172
2
HOH
HOH
172
C
HOH
177
2
HOH
HOH
177
C
HOH
178
2
HOH
HOH
178
C
HOH
180
2
HOH
HOH
180
C
HOH
96
2
HOH
HOH
96
D
HOH
98
2
HOH
HOH
98
D
HOH
122
2
HOH
HOH
122
D
HOH
126
2
HOH
HOH
126
D
HOH
140
2
HOH
HOH
140
D
HOH
141
2
HOH
HOH
141
D
HOH
145
2
HOH
HOH
145
D
HOH
153
2
HOH
HOH
153
D
HOH
158
2
HOH
HOH
158
D
HOH
162
2
HOH
HOH
162
D
HOH
163
2
HOH
HOH
163
D
HOH
164
2
HOH
HOH
164
D
HOH
168
2
HOH
HOH
168
D
HOH
170
2
HOH
HOH
170
D
HOH
179
2
HOH
HOH
179
D
HOH
102
2
HOH
HOH
102
E
HOH
103
2
HOH
HOH
103
E
HOH
127
2
HOH
HOH
127
E
HOH
128
2
HOH
HOH
128
E
HOH
135
2
HOH
HOH
135
E
HOH
138
2
HOH
HOH
138
E
HOH
143
2
HOH
HOH
143
E
HOH
149
2
HOH
HOH
149
E
HOH
155
2
HOH
HOH
155
E
HOH
161
2
HOH
HOH
161
E
HOH
171
2
HOH
HOH
171
E
HOH
186
2
HOH
HOH
186
E
HOH
100
2
HOH
HOH
100
F
HOH
101
2
HOH
HOH
101
F
HOH
104
2
HOH
HOH
104
F
HOH
105
2
HOH
HOH
105
F
HOH
106
2
HOH
HOH
106
F
HOH
110
2
HOH
HOH
110
F
HOH
111
2
HOH
HOH
111
F
HOH
129
2
HOH
HOH
129
F
HOH
132
2
HOH
HOH
132
F
HOH
136
2
HOH
HOH
136
F
HOH
137
2
HOH
HOH
137
F
HOH
144
2
HOH
HOH
144
F
HOH
147
2
HOH
HOH
147
F
HOH
148
2
HOH
HOH
148
F
HOH
154
2
HOH
HOH
154
F
HOH
160
2
HOH
HOH
160
F
HOH
165
2
HOH
HOH
165
F
HOH
166
2
HOH
HOH
166
F
HOH
167
2
HOH
HOH
167
F
HOH
169
2
HOH
HOH
169
F
A
1
n
1
DA
1
A
C
2
n
2
DC
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
T
8
n
8
DT
8
A
C
9
n
9
DC
9
A
G
10
n
10
DG
10
A
G
11
n
11
DG
11
A
T
12
n
12
DT
12
A
A
13
n
1
DA
13
B
C
14
n
2
DC
14
B
C
15
n
3
DC
15
B
G
16
n
4
DG
16
B
A
17
n
5
DA
17
B
A
18
n
6
DA
18
B
T
19
n
7
DT
19
B
T
20
n
8
DT
20
B
C
21
n
9
DC
21
B
G
22
n
10
DG
22
B
G
23
n
11
DG
23
B
T
24
n
12
DT
24
B
A
25
n
1
DA
25
C
C
26
n
2
DC
26
C
C
27
n
3
DC
27
C
G
28
n
4
DG
28
C
A
29
n
5
DA
29
C
A
30
n
6
DA
30
C
T
31
n
7
DT
31
C
T
32
n
8
DT
32
C
C
33
n
9
DC
33
C
G
34
n
10
DG
34
C
G
35
n
11
DG
35
C
T
36
n
12
DT
36
C
A
37
n
1
DA
37
D
C
38
n
2
DC
38
D
C
39
n
3
DC
39
D
G
40
n
4
DG
40
D
A
41
n
5
DA
41
D
A
42
n
6
DA
42
D
T
43
n
7
DT
43
D
T
44
n
8
DT
44
D
C
45
n
9
DC
45
D
G
46
n
10
DG
46
D
G
47
n
11
DG
47
D
T
48
n
12
DT
48
D
A
49
n
1
DA
49
E
C
50
n
2
DC
50
E
C
51
n
3
DC
51
E
G
52
n
4
DG
52
E
A
53
n
5
DA
53
E
A
54
n
6
DA
54
E
T
55
n
7
DT
55
E
T
56
n
8
DT
56
E
C
57
n
9
DC
57
E
G
58
n
10
DG
58
E
G
59
n
11
DG
59
E
T
60
n
12
DT
60
E
A
61
n
1
DA
61
F
C
62
n
2
DC
62
F
C
63
n
3
DC
63
F
G
64
n
4
DG
64
F
A
65
n
5
DA
65
F
A
66
n
6
DA
66
F
T
67
n
7
DT
67
F
T
68
n
8
DT
68
F
C
69
n
9
DC
69
F
G
70
n
10
DG
70
F
G
71
n
11
DG
71
F
T
72
n
12
DT
72
F
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
E
E
OP2
O
DG
HOH
58
186
2.12
PARAM_NDBX.DNA
TOP_NDBX.DNA
30.1
REFINEMENT STARTED WITH X-PLOR 3.1 USING B-DNA FIBER MODEL
ALL DATA INCLUDED. REFINEMENT CONTINUED IN SHELXL-97 WITH
THE OPTION HOPE FOR ANISOTROPIC SCALING TO CORRECT SIGNIFICANT
ANISOTROPY IN THE DATA. THE CORRECTED OBSERVED STRUCTURE
FACTORS WITH F<0 WERE EXCLUDED FROM REFINEMENT. REFINEMENT
FURTHER CONTINUED WITH X-PLOR 3.1.
0.2920000
0.2220000
0.2240000
2.2
19.0
456
9810
8475
86.4
random
1
isotropic
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
Fiber model of B-DNA
Parkinson et al.
2.2
19.0
114
1572
0
1458
0
0.01
1.6
17.7
0.3700000
0.3300000
2.3
37
2.2
19.0
1ILC
9810
9810
0
0
0.0510000
0.0510000
1
25.8
3.7
95.7
0.6540000
2.2
2.24
2.0
491
0.6540000
3.6
95.0
model building
MFT
model building
ULTIMA
refinement
X-PLOR
3.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
MFT
phasing
ULTIMA
DNA Bending by an Adenine-Thymine Tract and Its Role in Gene Regulation.
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
hydrog
WATSON-CRICK
A
DA
1
A
N1
DA
1
1_555
B
DT
24
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
A
DA
1
A
N6
DA
1
1_555
B
DT
24
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
23
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
23
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
23
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
22
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
22
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
22
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
21
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
21
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
21
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
20
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
20
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
19
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
19
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
18
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
18
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
17
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
17
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
16
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
16
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
16
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
15
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
15
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
15
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N1
DG
11
1_555
B
DC
14
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N2
DG
11
1_555
B
DC
14
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
11
A
O6
DG
11
1_555
B
DC
14
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DT
12
A
N3
DT
12
1_555
B
DA
13
B
N1
DA
1
1_555
hydrog
WATSON-CRICK
A
DT
12
A
O4
DT
12
1_555
B
DA
13
B
N6
DA
1
1_555
hydrog
WATSON-CRICK
C
DA
25
C
N1
DA
1
1_555
D
DT
48
D
N3
DT
12
1_555
hydrog
WATSON-CRICK
C
DA
25
C
N6
DA
1
1_555
D
DT
48
D
O4
DT
12
1_555
hydrog
WATSON-CRICK
C
DC
26
C
N3
DC
2
1_555
D
DG
47
D
N1
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
26
C
N4
DC
2
1_555
D
DG
47
D
O6
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
26
C
O2
DC
2
1_555
D
DG
47
D
N2
DG
11
1_555
hydrog
WATSON-CRICK
C
DC
27
C
N3
DC
3
1_555
D
DG
46
D
N1
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
27
C
N4
DC
3
1_555
D
DG
46
D
O6
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
27
C
O2
DC
3
1_555
D
DG
46
D
N2
DG
10
1_555
hydrog
WATSON-CRICK
C
DG
28
C
N1
DG
4
1_555
D
DC
45
D
N3
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
28
C
N2
DG
4
1_555
D
DC
45
D
O2
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
28
C
O6
DG
4
1_555
D
DC
45
D
N4
DC
9
1_555
hydrog
WATSON-CRICK
C
DA
29
C
N1
DA
5
1_555
D
DT
44
D
N3
DT
8
1_555
hydrog
WATSON-CRICK
C
DA
29
C
N6
DA
5
1_555
D
DT
44
D
O4
DT
8
1_555
hydrog
WATSON-CRICK
C
DA
30
C
N1
DA
6
1_555
D
DT
43
D
N3
DT
7
1_555
hydrog
WATSON-CRICK
C
DA
30
C
N6
DA
6
1_555
D
DT
43
D
O4
DT
7
1_555
hydrog
WATSON-CRICK
C
DT
31
C
N3
DT
7
1_555
D
DA
42
D
N1
DA
6
1_555
hydrog
WATSON-CRICK
C
DT
31
C
O4
DT
7
1_555
D
DA
42
D
N6
DA
6
1_555
hydrog
WATSON-CRICK
C
DT
32
C
N3
DT
8
1_555
D
DA
41
D
N1
DA
5
1_555
hydrog
WATSON-CRICK
C
DT
32
C
O4
DT
8
1_555
D
DA
41
D
N6
DA
5
1_555
hydrog
WATSON-CRICK
C
DC
33
C
N3
DC
9
1_555
D
DG
40
D
N1
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
33
C
N4
DC
9
1_555
D
DG
40
D
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
33
C
O2
DC
9
1_555
D
DG
40
D
N2
DG
4
1_555
hydrog
WATSON-CRICK
C
DG
34
C
N1
DG
10
1_555
D
DC
39
D
N3
DC
3
1_555
hydrog
WATSON-CRICK
C
DG
34
C
N2
DG
10
1_555
D
DC
39
D
O2
DC
3
1_555
hydrog
WATSON-CRICK
C
DG
34
C
O6
DG
10
1_555
D
DC
39
D
N4
DC
3
1_555
hydrog
WATSON-CRICK
C
DG
35
C
N1
DG
11
1_555
D
DC
38
D
N3
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
35
C
N2
DG
11
1_555
D
DC
38
D
O2
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
35
C
O6
DG
11
1_555
D
DC
38
D
N4
DC
2
1_555
hydrog
WATSON-CRICK
C
DT
36
C
N3
DT
12
1_555
D
DA
37
D
N1
DA
1
1_555
hydrog
WATSON-CRICK
C
DT
36
C
O4
DT
12
1_555
D
DA
37
D
N6
DA
1
1_555
hydrog
WATSON-CRICK
E
DA
49
E
N1
DA
1
1_555
F
DT
72
F
N3
DT
12
1_555
hydrog
WATSON-CRICK
E
DA
49
E
N6
DA
1
1_555
F
DT
72
F
O4
DT
12
1_555
hydrog
WATSON-CRICK
E
DC
50
E
N3
DC
2
1_555
F
DG
71
F
N1
DG
11
1_555
hydrog
WATSON-CRICK
E
DC
50
E
N4
DC
2
1_555
F
DG
71
F
O6
DG
11
1_555
hydrog
WATSON-CRICK
E
DC
50
E
O2
DC
2
1_555
F
DG
71
F
N2
DG
11
1_555
hydrog
WATSON-CRICK
E
DC
51
E
N3
DC
3
1_555
F
DG
70
F
N1
DG
10
1_555
hydrog
WATSON-CRICK
E
DC
51
E
N4
DC
3
1_555
F
DG
70
F
O6
DG
10
1_555
hydrog
WATSON-CRICK
E
DC
51
E
O2
DC
3
1_555
F
DG
70
F
N2
DG
10
1_555
hydrog
WATSON-CRICK
E
DG
52
E
N1
DG
4
1_555
F
DC
69
F
N3
DC
9
1_555
hydrog
WATSON-CRICK
E
DG
52
E
N2
DG
4
1_555
F
DC
69
F
O2
DC
9
1_555
hydrog
WATSON-CRICK
E
DG
52
E
O6
DG
4
1_555
F
DC
69
F
N4
DC
9
1_555
hydrog
WATSON-CRICK
E
DA
53
E
N1
DA
5
1_555
F
DT
68
F
N3
DT
8
1_555
hydrog
WATSON-CRICK
E
DA
53
E
N6
DA
5
1_555
F
DT
68
F
O4
DT
8
1_555
hydrog
WATSON-CRICK
E
DA
54
E
N1
DA
6
1_555
F
DT
67
F
N3
DT
7
1_555
hydrog
WATSON-CRICK
E
DA
54
E
N6
DA
6
1_555
F
DT
67
F
O4
DT
7
1_555
hydrog
WATSON-CRICK
E
DT
55
E
N3
DT
7
1_555
F
DA
66
F
N1
DA
6
1_555
hydrog
WATSON-CRICK
E
DT
55
E
O4
DT
7
1_555
F
DA
66
F
N6
DA
6
1_555
hydrog
WATSON-CRICK
E
DT
56
E
N3
DT
8
1_555
F
DA
65
F
N1
DA
5
1_555
hydrog
WATSON-CRICK
E
DT
56
E
O4
DT
8
1_555
F
DA
65
F
N6
DA
5
1_555
hydrog
WATSON-CRICK
E
DC
57
E
N3
DC
9
1_555
F
DG
64
F
N1
DG
4
1_555
hydrog
WATSON-CRICK
E
DC
57
E
N4
DC
9
1_555
F
DG
64
F
O6
DG
4
1_555
hydrog
WATSON-CRICK
E
DC
57
E
O2
DC
9
1_555
F
DG
64
F
N2
DG
4
1_555
hydrog
WATSON-CRICK
E
DG
58
E
N1
DG
10
1_555
F
DC
63
F
N3
DC
3
1_555
hydrog
WATSON-CRICK
E
DG
58
E
N2
DG
10
1_555
F
DC
63
F
O2
DC
3
1_555
hydrog
WATSON-CRICK
E
DG
58
E
O6
DG
10
1_555
F
DC
63
F
N4
DC
3
1_555
hydrog
WATSON-CRICK
E
DG
59
E
N1
DG
11
1_555
F
DC
62
F
N3
DC
2
1_555
hydrog
WATSON-CRICK
E
DG
59
E
N2
DG
11
1_555
F
DC
62
F
O2
DC
2
1_555
hydrog
WATSON-CRICK
E
DG
59
E
O6
DG
11
1_555
F
DC
62
F
N4
DC
2
1_555
hydrog
WATSON-CRICK
E
DT
60
E
N3
DT
12
1_555
F
DA
61
F
N1
DA
1
1_555
hydrog
WATSON-CRICK
E
DT
60
E
O4
DT
12
1_555
F
DA
61
F
N6
DA
1
1_555
DNA
B-DNA DOUBLE HELIX, DODECAMER DUPLEX, HPV E2 DNA TARGET, DNA
1ILC
PDB
1
1ILC
1
12
1ILC
1
12
1ILC
A
1
1
12
13
24
1ILC
13
24
1ILC
B
1
1
12
25
36
1ILC
25
36
1ILC
C
1
1
12
37
48
1ILC
37
48
1ILC
D
1
1
12
49
60
1ILC
49
60
1ILC
E
1
1
12
61
72
1ILC
61
72
1ILC
F
1
1
12
1
P 1