0.011630
0.000000
0.000000
0.000000
0.011423
0.000000
0.000000
0.000000
0.012990
0.00000
0.00000
0.00000
Pata, J.D.
Zhou, B.L.
Steitz, T.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
85.988
87.542
76.983
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
N
337
N
O
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
US
Mol.Cell
MOCEFL
2168
1097-2765
8
427
437
10.1016/S1097-2765(01)00310-0
11545744
Crystal structure of a DinB lesion bypass DNA polymerase catalytic fragment reveals a classic polymerase catalytic domain.
2001
NE
Mutat.Res.
0027-5107
357
245
253
10.1016/0027-5107(96)00164-9
Identification of a DinB/UmuC Homolog in the Archeon Sulfolobus solfataricus
1996
10.2210/pdb1im4/pdb
pdb_00001im4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
double crystal monochromator
CCD
2000-08-16
BRANDEIS - B4
double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
1.100
1.0
X12C
NSLS
1.100
SYNCHROTRON
NSLS BEAMLINE X12C
24836.789
DBH
2.7.7.7
N-terminal catalytic domain (residues 2-216)
1
man
polymer
96.063
SULFATE ION
3
syn
non-polymer
18.015
water
110
nat
water
DBH bypass polymerase
no
no
HHHHHHIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVP
MRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKII
ADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEK
HHHHHHIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVP
MRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKII
ADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Sulfolobus
Escherichia
sample
DBH
2287
Sulfolobus solfataricus
562
Escherichia coli
HMS174(DE3)pLysS
plasmid
pNHis-DBH-216
1
2.9
58
VAPOR DIFFUSION, HANGING DROP
8.0
ammonium sulfate, magnesium chloride, MPD, Tris-HCl, beta-mercaptoethanol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-09-12
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2001-05-09
REL
REL
SO4
SULFATE ION
HOH
water
SO4
2001
2
SO4
SO4
2001
A
SO4
2002
2
SO4
SO4
2002
A
SO4
2003
2
SO4
SO4
2003
A
HOH
1
3
HOH
HOH
2004
A
HOH
2
3
HOH
HOH
2005
A
HOH
3
3
HOH
HOH
2006
A
HOH
4
3
HOH
HOH
2007
A
HOH
5
3
HOH
HOH
2008
A
HOH
6
3
HOH
HOH
2009
A
HOH
7
3
HOH
HOH
2010
A
HOH
8
3
HOH
HOH
2011
A
HOH
9
3
HOH
HOH
2012
A
HOH
10
3
HOH
HOH
2013
A
HOH
11
3
HOH
HOH
2014
A
HOH
12
3
HOH
HOH
2015
A
HOH
13
3
HOH
HOH
2016
A
HOH
14
3
HOH
HOH
2017
A
HOH
15
3
HOH
HOH
2018
A
HOH
16
3
HOH
HOH
2019
A
HOH
17
3
HOH
HOH
2020
A
HOH
18
3
HOH
HOH
2021
A
HOH
19
3
HOH
HOH
2022
A
HOH
20
3
HOH
HOH
2023
A
HOH
21
3
HOH
HOH
2024
A
HOH
22
3
HOH
HOH
2025
A
HOH
23
3
HOH
HOH
2026
A
HOH
24
3
HOH
HOH
2027
A
HOH
25
3
HOH
HOH
2028
A
HOH
26
3
HOH
HOH
2029
A
HOH
27
3
HOH
HOH
2030
A
HOH
28
3
HOH
HOH
2031
A
HOH
29
3
HOH
HOH
2032
A
HOH
30
3
HOH
HOH
2033
A
HOH
31
3
HOH
HOH
2034
A
HOH
32
3
HOH
HOH
2035
A
HOH
33
3
HOH
HOH
2036
A
HOH
34
3
HOH
HOH
2037
A
HOH
35
3
HOH
HOH
2038
A
HOH
36
3
HOH
HOH
2039
A
HOH
37
3
HOH
HOH
2040
A
HOH
38
3
HOH
HOH
2041
A
HOH
39
3
HOH
HOH
2042
A
HOH
40
3
HOH
HOH
2043
A
HOH
41
3
HOH
HOH
2044
A
HOH
42
3
HOH
HOH
2045
A
HOH
43
3
HOH
HOH
2046
A
HOH
44
3
HOH
HOH
2047
A
HOH
45
3
HOH
HOH
2048
A
HOH
46
3
HOH
HOH
2049
A
HOH
47
3
HOH
HOH
2050
A
HOH
48
3
HOH
HOH
2051
A
HOH
49
3
HOH
HOH
2052
A
HOH
50
3
HOH
HOH
2053
A
HOH
51
3
HOH
HOH
2054
A
HOH
52
3
HOH
HOH
2055
A
HOH
53
3
HOH
HOH
2056
A
HOH
54
3
HOH
HOH
2057
A
HOH
55
3
HOH
HOH
2058
A
HOH
56
3
HOH
HOH
2059
A
HOH
57
3
HOH
HOH
2060
A
HOH
58
3
HOH
HOH
2061
A
HOH
59
3
HOH
HOH
2062
A
HOH
60
3
HOH
HOH
2063
A
HOH
61
3
HOH
HOH
2064
A
HOH
62
3
HOH
HOH
2065
A
HOH
63
3
HOH
HOH
2066
A
HOH
64
3
HOH
HOH
2067
A
HOH
65
3
HOH
HOH
2068
A
HOH
66
3
HOH
HOH
2069
A
HOH
67
3
HOH
HOH
2070
A
HOH
68
3
HOH
HOH
2071
A
HOH
69
3
HOH
HOH
2072
A
HOH
70
3
HOH
HOH
2073
A
HOH
71
3
HOH
HOH
2074
A
HOH
72
3
HOH
HOH
2075
A
HOH
73
3
HOH
HOH
2076
A
HOH
74
3
HOH
HOH
2077
A
HOH
75
3
HOH
HOH
2078
A
HOH
76
3
HOH
HOH
2079
A
HOH
77
3
HOH
HOH
2080
A
HOH
78
3
HOH
HOH
2081
A
HOH
79
3
HOH
HOH
2082
A
HOH
80
3
HOH
HOH
2083
A
HOH
81
3
HOH
HOH
2084
A
HOH
82
3
HOH
HOH
2085
A
HOH
83
3
HOH
HOH
2086
A
HOH
84
3
HOH
HOH
2087
A
HOH
85
3
HOH
HOH
2088
A
HOH
86
3
HOH
HOH
2089
A
HOH
87
3
HOH
HOH
2090
A
HOH
88
3
HOH
HOH
2091
A
HOH
89
3
HOH
HOH
2092
A
HOH
90
3
HOH
HOH
2093
A
HOH
91
3
HOH
HOH
2094
A
HOH
92
3
HOH
HOH
2095
A
HOH
93
3
HOH
HOH
2096
A
HOH
94
3
HOH
HOH
2097
A
HOH
95
3
HOH
HOH
2098
A
HOH
96
3
HOH
HOH
2099
A
HOH
97
3
HOH
HOH
2100
A
HOH
98
3
HOH
HOH
2101
A
HOH
99
3
HOH
HOH
2102
A
HOH
100
3
HOH
HOH
2103
A
HOH
101
3
HOH
HOH
2104
A
HOH
102
3
HOH
HOH
2105
A
HOH
103
3
HOH
HOH
2106
A
HOH
104
3
HOH
HOH
2107
A
HOH
105
3
HOH
HOH
2108
A
HOH
106
3
HOH
HOH
2109
A
HOH
107
3
HOH
HOH
2110
A
HOH
108
3
HOH
HOH
2111
A
HOH
109
3
HOH
HOH
2112
A
HOH
110
3
HOH
HOH
2113
A
n
1
-4
A
HIS
-3
n
2
HIS
-3
A
HIS
-2
n
3
HIS
-2
A
HIS
-1
n
4
HIS
-1
A
HIS
0
n
5
HIS
0
A
HIS
1
n
6
HIS
1
A
ILE
2
n
7
ILE
2
A
VAL
3
n
8
VAL
3
A
ILE
4
n
9
ILE
4
A
PHE
5
n
10
PHE
5
A
VAL
6
n
11
VAL
6
A
ASP
7
n
12
ASP
7
A
PHE
8
n
13
PHE
8
A
ASP
9
n
14
ASP
9
A
TYR
10
n
15
TYR
10
A
PHE
11
n
16
PHE
11
A
PHE
12
n
17
PHE
12
A
ALA
13
n
18
ALA
13
A
GLN
14
n
19
GLN
14
A
VAL
15
n
20
VAL
15
A
GLU
16
n
21
GLU
16
A
GLU
17
n
22
GLU
17
A
VAL
18
n
23
VAL
18
A
LEU
19
n
24
LEU
19
A
ASN
20
n
25
ASN
20
A
PRO
21
n
26
PRO
21
A
GLN
22
n
27
GLN
22
A
TYR
23
n
28
TYR
23
A
LYS
24
n
29
LYS
24
A
GLY
25
n
30
GLY
25
A
LYS
26
n
31
LYS
26
A
PRO
27
n
32
PRO
27
A
LEU
28
n
33
LEU
28
A
VAL
29
n
34
VAL
29
A
VAL
30
n
35
VAL
30
A
CYS
31
n
36
CYS
31
A
VAL
32
n
37
VAL
32
A
TYR
33
n
38
TYR
33
A
SER
34
n
39
SER
34
A
n
40
35
A
n
41
36
A
n
42
37
A
n
43
38
A
THR
39
n
44
THR
39
A
SER
40
n
45
SER
40
A
GLY
41
n
46
GLY
41
A
ALA
42
n
47
ALA
42
A
VAL
43
n
48
VAL
43
A
ALA
44
n
49
ALA
44
A
THR
45
n
50
THR
45
A
ALA
46
n
51
ALA
46
A
ASN
47
n
52
ASN
47
A
TYR
48
n
53
TYR
48
A
GLU
49
n
54
GLU
49
A
ALA
50
n
55
ALA
50
A
ARG
51
n
56
ARG
51
A
LYS
52
n
57
LYS
52
A
LEU
53
n
58
LEU
53
A
GLY
54
n
59
GLY
54
A
VAL
55
n
60
VAL
55
A
LYS
56
n
61
LYS
56
A
ALA
57
n
62
ALA
57
A
GLY
58
n
63
GLY
58
A
MET
59
n
64
MET
59
A
PRO
60
n
65
PRO
60
A
ILE
61
n
66
ILE
61
A
ILE
62
n
67
ILE
62
A
LYS
63
n
68
LYS
63
A
ALA
64
n
69
ALA
64
A
MET
65
n
70
MET
65
A
GLN
66
n
71
GLN
66
A
ILE
67
n
72
ILE
67
A
ALA
68
n
73
ALA
68
A
PRO
69
n
74
PRO
69
A
SER
70
n
75
SER
70
A
ALA
71
n
76
ALA
71
A
ILE
72
n
77
ILE
72
A
TYR
73
n
78
TYR
73
A
VAL
74
n
79
VAL
74
A
PRO
75
n
80
PRO
75
A
MET
76
n
81
MET
76
A
ARG
77
n
82
ARG
77
A
LYS
78
n
83
LYS
78
A
PRO
79
n
84
PRO
79
A
ILE
80
n
85
ILE
80
A
TYR
81
n
86
TYR
81
A
GLU
82
n
87
GLU
82
A
ALA
83
n
88
ALA
83
A
PHE
84
n
89
PHE
84
A
SER
85
n
90
SER
85
A
ASN
86
n
91
ASN
86
A
ARG
87
n
92
ARG
87
A
ILE
88
n
93
ILE
88
A
MET
89
n
94
MET
89
A
ASN
90
n
95
ASN
90
A
LEU
91
n
96
LEU
91
A
LEU
92
n
97
LEU
92
A
ASN
93
n
98
ASN
93
A
LYS
94
n
99
LYS
94
A
HIS
95
n
100
HIS
95
A
ALA
96
n
101
ALA
96
A
ASP
97
n
102
ASP
97
A
LYS
98
n
103
LYS
98
A
ILE
99
n
104
ILE
99
A
GLU
100
n
105
GLU
100
A
VAL
101
n
106
VAL
101
A
ALA
102
n
107
ALA
102
A
SER
103
n
108
SER
103
A
ILE
104
n
109
ILE
104
A
ASP
105
n
110
ASP
105
A
GLU
106
n
111
GLU
106
A
ALA
107
n
112
ALA
107
A
TYR
108
n
113
TYR
108
A
LEU
109
n
114
LEU
109
A
ASP
110
n
115
ASP
110
A
VAL
111
n
116
VAL
111
A
THR
112
n
117
THR
112
A
ASN
113
n
118
ASN
113
A
LYS
114
n
119
LYS
114
A
VAL
115
n
120
VAL
115
A
GLU
116
n
121
GLU
116
A
GLY
117
n
122
GLY
117
A
ASN
118
n
123
ASN
118
A
PHE
119
n
124
PHE
119
A
GLU
120
n
125
GLU
120
A
ASN
121
n
126
ASN
121
A
GLY
122
n
127
GLY
122
A
ILE
123
n
128
ILE
123
A
GLU
124
n
129
GLU
124
A
LEU
125
n
130
LEU
125
A
ALA
126
n
131
ALA
126
A
ARG
127
n
132
ARG
127
A
LYS
128
n
133
LYS
128
A
ILE
129
n
134
ILE
129
A
LYS
130
n
135
LYS
130
A
GLN
131
n
136
GLN
131
A
GLU
132
n
137
GLU
132
A
ILE
133
n
138
ILE
133
A
LEU
134
n
139
LEU
134
A
GLU
135
n
140
GLU
135
A
LYS
136
n
141
LYS
136
A
GLU
137
n
142
GLU
137
A
LYS
138
n
143
LYS
138
A
ILE
139
n
144
ILE
139
A
THR
140
n
145
THR
140
A
VAL
141
n
146
VAL
141
A
THR
142
n
147
THR
142
A
VAL
143
n
148
VAL
143
A
GLY
144
n
149
GLY
144
A
VAL
145
n
150
VAL
145
A
ALA
146
n
151
ALA
146
A
PRO
147
n
152
PRO
147
A
ASN
148
n
153
ASN
148
A
LYS
149
n
154
LYS
149
A
ILE
150
n
155
ILE
150
A
LEU
151
n
156
LEU
151
A
ALA
152
n
157
ALA
152
A
LYS
153
n
158
LYS
153
A
ILE
154
n
159
ILE
154
A
ILE
155
n
160
ILE
155
A
ALA
156
n
161
ALA
156
A
ASP
157
n
162
ASP
157
A
LYS
158
n
163
LYS
158
A
SER
159
n
164
SER
159
A
LYS
160
n
165
LYS
160
A
PRO
161
n
166
PRO
161
A
ASN
162
n
167
ASN
162
A
GLY
163
n
168
GLY
163
A
LEU
164
n
169
LEU
164
A
GLY
165
n
170
GLY
165
A
VAL
166
n
171
VAL
166
A
ILE
167
n
172
ILE
167
A
ARG
168
n
173
ARG
168
A
PRO
169
n
174
PRO
169
A
THR
170
n
175
THR
170
A
GLU
171
n
176
GLU
171
A
VAL
172
n
177
VAL
172
A
GLN
173
n
178
GLN
173
A
ASP
174
n
179
ASP
174
A
PHE
175
n
180
PHE
175
A
LEU
176
n
181
LEU
176
A
ASN
177
n
182
ASN
177
A
GLU
178
n
183
GLU
178
A
LEU
179
n
184
LEU
179
A
ASP
180
n
185
ASP
180
A
ILE
181
n
186
ILE
181
A
ASP
182
n
187
ASP
182
A
GLU
183
n
188
GLU
183
A
ILE
184
n
189
ILE
184
A
PRO
185
n
190
PRO
185
A
GLY
186
n
191
GLY
186
A
ILE
187
n
192
ILE
187
A
GLY
188
n
193
GLY
188
A
SER
189
n
194
SER
189
A
VAL
190
n
195
VAL
190
A
LEU
191
n
196
LEU
191
A
ALA
192
n
197
ALA
192
A
ARG
193
n
198
ARG
193
A
ARG
194
n
199
ARG
194
A
LEU
195
n
200
LEU
195
A
ASN
196
n
201
ASN
196
A
GLU
197
n
202
GLU
197
A
LEU
198
n
203
LEU
198
A
GLY
199
n
204
GLY
199
A
ILE
200
n
205
ILE
200
A
GLN
201
n
206
GLN
201
A
LYS
202
n
207
LYS
202
A
LEU
203
n
208
LEU
203
A
ARG
204
n
209
ARG
204
A
ASP
205
n
210
ASP
205
A
n
211
206
A
n
212
207
A
n
213
208
A
n
214
209
A
n
215
210
A
n
216
211
A
n
217
212
A
n
218
213
A
n
219
214
A
n
220
215
A
n
221
216
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
103
A
N
SER
108
A
O
GLU
106
A
O
GLU
111
A
N
LEU
109
A
N
LEU
114
A
O
ILE
4
A
O
ILE
9
A
O
ASP
7
A
O
ASP
12
A
N
THR
142
A
N
THR
147
A
O
VAL
143
A
O
VAL
148
A
N
GLY
165
A
N
GLY
170
A
N
ALA
44
A
N
ALA
49
A
O
VAL
30
A
O
VAL
35
A
N
VAL
29
A
N
VAL
34
A
O
ILE
72
A
O
ILE
77
1
A
HIS
-4
A
HIS
1
1
Y
1
A
GLY
35
A
GLY
40
1
Y
1
A
ARG
36
A
ARG
41
1
Y
1
A
THR
37
A
THR
42
1
Y
1
A
LYS
38
A
LYS
43
1
Y
1
A
ILE
206
A
ILE
211
1
Y
1
A
LEU
207
A
LEU
212
1
Y
1
A
SER
208
A
SER
213
1
Y
1
A
LYS
209
A
LYS
214
1
Y
1
A
ASN
210
A
ASN
215
1
Y
1
A
TYR
211
A
TYR
216
1
Y
1
A
ASN
212
A
ASN
217
1
Y
1
A
GLU
213
A
GLU
218
1
Y
1
A
LEU
214
A
LEU
219
1
Y
1
A
GLU
215
A
GLU
220
1
Y
1
A
LYS
216
A
LYS
221
1
Y
1
A
A
CD
OE1
GLU
GLU
124
124
0.086
0.011
1.252
1.338
N
1
A
HIS
-2
94.40
20.37
1
A
HIS
-1
-145.20
-51.20
1
A
HIS
0
-46.25
-13.72
1
A
TYR
10
27.24
45.48
1
A
SER
103
-171.55
-176.82
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER_REP.TOP
ION.PARAM
ION.TOP
52.1
12.62
0.00
0.00
-18.29
0.00
5.67
0.2610000
0.008
0.2270000
0.2270000
0.2270000
2.30
28.91
1074
12880
12634
8.5
95.6
RANDOM
1260659.26
0.00
1
RESTRAINED
THROUGHOUT
2.0
0.0
MAD
Engh & Huber, as implemented in CNS
FLAT MODEL
38.12
0.31
0.41
0.33
5.00
0.32
0.28
2.30
28.91
110
1737
15
0
1612
0.013
1.7
23.4
1.12
1.41
1.50
2.09
2.00
1.48
2.00
2.40
2.50
0.3050000
0.043
0.3230000
2.38
50
1110
1164
10
4.3
89.5
38.6
2.3
30.0
1IM4
12897
12897
0.0
-3.0
0.0410000
1
38.4
6.6
97.7
0.3310000
2.3
2.35
3.8
849
5.5
97.8
phasing
SOLVE
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
Crystal Structure of a DinB Homolog (DBH) Lesion Bypass DNA Polymerase Catalytic Fragment from Sulfolobus solfataricus
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
A
TYR
10
A
TYR
15
HELX_P
A
ASN
20
A
ASN
25
1
1
11
A
PRO
21
A
PRO
26
HELX_P
A
LYS
24
A
LYS
29
5
2
4
A
ASN
47
A
ASN
52
HELX_P
A
LYS
52
A
LYS
57
1
3
6
A
PRO
60
A
PRO
65
HELX_P
A
ALA
68
A
ALA
73
1
4
9
A
ARG
77
A
ARG
82
HELX_P
A
LYS
94
A
LYS
99
1
5
18
A
ASN
118
A
ASN
123
HELX_P
A
LYS
138
A
LYS
143
1
6
21
A
ASN
148
A
ASN
153
HELX_P
A
SER
159
A
SER
164
1
7
12
A
ARG
168
A
ARG
173
HELX_P
A
THR
170
A
THR
175
5
8
3
A
GLU
171
A
GLU
176
HELX_P
A
GLU
178
A
GLU
183
1
9
8
A
ILE
181
A
ILE
186
HELX_P
A
ILE
184
A
ILE
189
5
10
4
A
GLY
188
A
GLY
193
HELX_P
A
LEU
198
A
LEU
203
1
11
11
TRANSFERASE
DNA polymerase palm, thumb, fingers, helix-hairpin-helix, fidelity, processivity, TRANSFERASE
A
LYS
160
A
LYS
165
1
A
PRO
161
A
PRO
166
-1.79
DPO41_SULSO
UNP
1
2
P96022
IVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIY
EAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSKP
NGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEK
2
216
1IM4
2
216
P96022
A
1
7
221
1
expression tag
HIS
-4
1IM4
A
P96022
UNP
1
1
expression tag
HIS
-3
1IM4
A
P96022
UNP
2
1
expression tag
HIS
-2
1IM4
A
P96022
UNP
3
1
expression tag
HIS
-1
1IM4
A
P96022
UNP
4
1
expression tag
HIS
0
1IM4
A
P96022
UNP
5
1
expression tag
HIS
1
1IM4
A
P96022
UNP
6
5
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
A
LYS
98
A
LYS
103
A
SER
103
A
SER
108
A
GLU
106
A
GLU
111
A
ASP
110
A
ASP
115
A
VAL
3
A
VAL
8
A
PHE
8
A
PHE
13
A
VAL
141
A
VAL
146
A
ALA
146
A
ALA
151
A
LEU
164
A
LEU
169
A
VAL
166
A
VAL
171
A
GLY
41
A
GLY
46
A
ALA
46
A
ALA
51
A
LEU
28
A
LEU
33
A
TYR
33
A
TYR
38
A
ILE
72
A
ILE
77
A
PRO
75
A
PRO
80
BINDING SITE FOR RESIDUE SO4 A 2001
A
SO4
2001
Software
10
BINDING SITE FOR RESIDUE SO4 A 2002
A
SO4
2002
Software
5
BINDING SITE FOR RESIDUE SO4 A 2003
A
SO4
2003
Software
4
A
ASP
9
A
ASP
14
10
1_555
A
TYR
10
A
TYR
15
10
1_555
A
TYR
48
A
TYR
53
10
1_555
A
ARG
51
A
ARG
56
10
1_555
A
LYS
160
A
LYS
165
10
1_555
A
HOH
2010
E
HOH
10
1_555
A
HOH
2035
E
HOH
10
1_555
A
HOH
2068
E
HOH
10
1_555
A
HOH
2069
E
HOH
10
1_555
A
HOH
2086
E
HOH
10
1_555
A
HIS
0
A
HIS
5
5
1_555
A
ASN
20
A
ASN
25
5
7_655
A
GLN
22
A
GLN
27
5
6_665
A
LYS
26
A
LYS
31
5
6_665
A
ARG
77
A
ARG
82
5
7_655
A
GLY
188
A
GLY
193
4
1_555
A
SER
189
A
SER
194
4
1_555
A
HOH
2031
E
HOH
4
1_555
A
HOH
2074
E
HOH
4
1_555
20
C 2 2 21