0.035765 0.000000 0.000000 0.000000 0.035765 0.000000 0.000000 0.000000 0.019022 0.00000 0.00000 0.00000 Berger, I. Su, L. Spitzner, J.R. Kang, C. Burke, T.G. Rich, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 27.960 27.960 52.570 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C27 H29 I N O10 1 654.424 4'-DEOXY-4'-IODODOXORUBICIN 4'-DEOXY-4'-IODOADRIAMYCIN non-polymer C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H Y 108 N C Y 109 N C Y 110 N C Y 111 N C N 112 N C Y 113 N C N 114 S C N 115 N C N 116 S C N 117 N C Y 118 N C N 119 N C N 120 N C N 121 N C Y 122 N C Y 123 N C Y 124 N C Y 125 N C Y 126 N C Y 127 N C N 128 N C N 129 N O N 130 N O N 131 N O N 132 N O N 133 N O N 134 N O N 135 N O N 136 N O N 137 N O N 138 R C N 139 N C N 140 S C N 141 S C N 142 S C N 143 N C N 144 N O N 145 N N N 146 N I N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N O N 177 N P N 178 N O N 179 N O N 180 N O N 181 N C N 182 R C N 183 N O N 184 S C N 185 N O N 186 N C N 187 R C N 188 N N N 189 N C N 190 N O N 191 N N N 192 N C N 193 N O N 194 N C N 195 N C N 196 N C N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N O N 213 N H N 214 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing Y 113 N doub Y 114 N sing N 115 N sing Y 116 N sing N 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub Y 125 N doub Y 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing Y 141 N doub Y 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing Y 152 N doub Y 153 N sing Y 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 23 4488 4494 10.1093/nar/23.21.4488 7501474 Molecular structure of the halogenated anti-cancer drug iododoxorubicin complexed with d(TGTACA) and d(CGATCG). 1995 10.2210/pdb1imr/pdb pdb_00001imr 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 277.00 1 IMAGE PLATE RIGAKU RAXIS IIC x-ray 1 1.0 1808.229 DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') 1 syn polymer 654.424 4'-DEOXY-4'-IODODOXORUBICIN 1 syn non-polymer 18.015 water 49 nat water no no (DT)(DG)(DT)(DA)(DC)(DA) TGTACA A polydeoxyribonucleotide n n n n n n 2.84 56.71 VAPOR DIFFUSION, HANGING DROP 6.50 pH 6.50, VAPOR DIFFUSION, HANGING DROP, temperature 277.00K 277.00 WATER 1 MPD 1 MGCL2 1 SPERMINE 1 KCL 1 K CACODYLATE 1 WATER 2 MPD 2 7.714 1 20 A 1 A 6 -0.152 A_DT1:DA6_A 1 0.863 -0.164 0.198 -0.115 -16.634 1 19 A 2 A 5 0.585 A_DG2:DC5_A 2 4.470 -0.025 -0.351 -0.051 -1.397 1 20 A 3 A 4 2.962 A_DT3:DA4_A 3 -5.097 -0.039 0.113 -0.160 1.397 1 20 A 4 A 3 2.962 A_DA4:DT3_A 4 -5.097 0.039 0.113 -0.160 16.634 1 19 A 5 A 2 0.585 A_DC5:DG2_A 5 4.470 0.025 -0.351 -0.051 -7.714 1 20 A 6 A 1 -0.152 A_DA6:DT1_A 6 0.863 0.164 0.198 -0.115 6.885 37.477 A A 1 2 -7.945 A A 6 5 7.017 -5.083 1.239 1.181 AA_DT1DG2:DC5DA6_AA 1 3.547 -5.545 36.979 3.264 -0.934 3.141 28.868 A A 2 3 0.866 A A 5 4 3.034 0.431 -1.119 0.089 AA_DG2DT3:DA4DC5_AA 2 -3.283 6.599 28.682 0.088 1.553 3.341 38.184 A A 3 4 6.775 A A 4 3 3.372 4.423 0.000 -0.086 AA_DT3DA4:DT3DA4_AA 3 0.000 0.000 37.936 -0.706 0.000 3.141 28.868 A A 4 5 0.866 A A 3 2 3.034 0.431 1.119 0.089 AA_DA4DC5:DG2DT3_AA 4 3.283 -6.599 28.682 0.088 -1.553 6.885 37.477 A A 5 6 -7.945 A A 2 1 7.017 -5.083 -1.239 1.181 AA_DC5DA6:DT1DG2_AA 5 -3.547 5.545 36.979 3.264 0.934 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1996-04-04 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1995-10-23 REL DM7 4'-DEOXY-4'-IODODOXORUBICIN HOH water DM7 7 2 DM7 DM7 7 A HOH 8 3 HOH HOH 8 A HOH 9 3 HOH HOH 9 A HOH 10 3 HOH HOH 10 A HOH 11 3 HOH HOH 11 A HOH 12 3 HOH HOH 12 A HOH 13 3 HOH HOH 13 A HOH 14 3 HOH HOH 14 A HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 22 3 HOH HOH 22 A HOH 23 3 HOH HOH 23 A HOH 24 3 HOH HOH 24 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 28 3 HOH HOH 28 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 32 3 HOH HOH 32 A HOH 33 3 HOH HOH 33 A HOH 34 3 HOH HOH 34 A HOH 35 3 HOH HOH 35 A HOH 36 3 HOH HOH 36 A HOH 37 3 HOH HOH 37 A HOH 38 3 HOH HOH 38 A HOH 39 3 HOH HOH 39 A HOH 40 3 HOH HOH 40 A HOH 41 3 HOH HOH 41 A HOH 42 3 HOH HOH 42 A HOH 43 3 HOH HOH 43 A HOH 44 3 HOH HOH 44 A HOH 45 3 HOH HOH 45 A HOH 46 3 HOH HOH 46 A HOH 47 3 HOH HOH 47 A HOH 48 3 HOH HOH 48 A HOH 49 3 HOH HOH 49 A HOH 50 3 HOH HOH 50 A HOH 51 3 HOH HOH 51 A HOH 52 3 HOH HOH 52 A HOH 53 3 HOH HOH 53 A HOH 54 3 HOH HOH 54 A HOH 55 3 HOH HOH 55 A HOH 56 3 HOH HOH 56 A T 1 n 1 DT 1 A G 2 n 2 DG 2 A T 3 n 3 DT 3 A A 4 n 4 DA 4 A C 5 n 5 DC 5 A A 6 n 6 DA 6 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_665 -y+1,-x+1,-z+1/2 crystal symmetry operation 27.9600000000 27.9600000000 26.2850000000 1 3.83 0.30 108.30 112.13 A A A O4' C1' N1 DT DT DT 1 1 1 N 1 3.95 0.30 108.30 112.25 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 -3.68 0.60 122.90 119.22 A A A C6 C5 C7 DT DT DT 3 3 3 N 1 -7.81 1.00 110.10 102.29 A A A C1' O4' C4' DC DC DC 5 5 5 N 1 4.37 0.60 118.90 123.27 A A A N1 C2 O2 DC DC DC 5 5 5 N 1 A A C5 C7 DT DT 1 1 0.059 0.006 1.496 1.555 N 1 A A C5 C7 DT DT 3 3 0.054 0.006 1.496 1.550 N 0.1760000 0.1760000 1.600 10.000 2521 1 1.000 1.600 10.000 49 221 39 133 0 0.016 refinement X-PLOR MOLECULAR STRUCTURE OF THE HALOGENATED ANTI-CANCER DRUG IODODOXORUBICIN COMPLEXED WITH D(TGTACA) AND D(CGATCG) 1 N N 2 N N 3 N N hydrog WATSON-CRICK A DT 1 A N3 DT 1 1_555 A DA 6 A N1 DA 6 8_665 hydrog WATSON-CRICK A DT 1 A O4 DT 1 1_555 A DA 6 A N6 DA 6 8_665 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 A DC 5 A N3 DC 5 8_665 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 A DC 5 A O2 DC 5 8_665 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 A DC 5 A N4 DC 5 8_665 hydrog WATSON-CRICK A DT 3 A N3 DT 3 1_555 A DA 4 A N1 DA 4 8_665 hydrog WATSON-CRICK A DT 3 A O4 DT 3 1_555 A DA 4 A N6 DA 4 8_665 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 A DT 3 A N3 DT 3 8_665 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 A DT 3 A O4 DT 3 8_665 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 A DG 2 A N1 DG 2 8_665 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 A DG 2 A O6 DG 2 8_665 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 A DG 2 A N2 DG 2 8_665 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 A DT 1 A N3 DT 1 8_665 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 A DT 1 A O4 DT 1 8_665 DNA RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 1IMR PDB 1 1IMR 1 6 1IMR 1 6 1IMR A 1 1 6 BINDING SITE FOR RESIDUE DM7 A 7 A DM7 7 Software 12 A DT 1 A DT 1 12 8_665 A DG 2 A DG 2 12 8_665 A DT 3 A DT 3 12 8_665 A DA 4 A DA 4 12 1_555 A DC 5 A DC 5 12 1_555 A DA 6 A DA 6 12 1_555 A HOH 8 C HOH 12 1_555 A HOH 9 C HOH 12 1_555 A HOH 23 C HOH 12 1_555 A HOH 25 C HOH 12 1_555 A HOH 28 C HOH 12 1_555 A HOH 45 C HOH 12 1_555 92 P 41 21 2