0.005676
0.000000
0.000000
0.000000
0.015996
0.000000
0.000000
0.000000
0.022024
0.00000
0.00000
0.00000
Simonovic, M.
Gettins, P.G.W.
Volz, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
176.174
62.514
45.406
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
R
C
N
251
R
C
N
252
R
C
N
253
S
C
N
254
R
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
N
N
259
N
O
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
R
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
N
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
C
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
Y
278
N
doub
Y
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
11131
11135
10.1073/pnas.211268598
11562499
Crystal structure of human PEDF, a potent anti-angiogenic and neurite growth-promoting factor.
2001
10.2210/pdb1imv/pdb
pdb_00001imv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298.0
1
298.0
1
298.0
1
focusing mirrors
IMAGE PLATE
2001-04-06
RIGAKU RAXIS IIC
focusing mirrors
IMAGE PLATE
2001-04-08
RIGAKU RAXIS IIC
focusing mirrors
IMAGE PLATE
2001-04-10
RIGAKU RAXIS IIC
Ni FILTER + mirrors
SINGLE WAVELENGTH
M
x-ray
1
Ni FILTER + mirrors
SINGLE WAVELENGTH
M
x-ray
1
Ni FILTER + mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
1.5418
ROTATING ANODE
RIGAKU RU200
1.5418
ROTATING ANODE
RIGAKU RU200
44328.516
PIGMENT EPITHELIUM-DERIVED FACTOR
1
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
18.015
water
45
nat
water
PEDF
no
no
NPASPPEEGSPDPDSTGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTTNVLLSPLSVATALSALSLGADERT
ESIIHRALYYDLISSPDIHGTYKELLDTVTAPQKNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGNPRLDLQEI
NNWVQAQMKGKLARSTKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVLRYGLDSDLS
CKIAQLPLTGSMSIIFFLPLKVTQNLTLIEESLTSEFIHDIDRELKTVQAVLTVPKLKLSYEGEVTKSLQEMKLQSLFDS
PDFSKITGKPIKLTQVEHRAGFEWNEDGAGTTPSPGLQPAHLTFPLDYHLNQPFIFVLRDTDTGALLFIGKILDPRGP
NPASPPEEGSPDPDSTGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTTNVLLSPLSVATALSALSLGADERT
ESIIHRALYYDLISSPDIHGTYKELLDTVTAPQKNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGNPRLDLQEI
NNWVQAQMKGKLARSTKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVLRYGLDSDLS
CKIAQLPLTGSMSIIFFLPLKVTQNLTLIEESLTSEFIHDIDRELKTVQAVLTVPKLKLSYEGEVTKSLQEMKLQSLFDS
PDFSKITGKPIKLTQVEHRAGFEWNEDGAGTTPSPGLQPAHLTFPLDYHLNQPFIFVLRDTDTGALLFIGKILDPRGP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Chinese hamster
Cricetulus
sample
9606
Homo sapiens
BHK
10029
Cricetulus griseus
plasmid
pMA
3
2.82
56.36
VAPOR DIFFUSION, HANGING DROP
6.20
0.2M ammonium fluoride, 20% PEG 3350, pH 6.20, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
diffrn_source
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Data collection
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2001-09-26
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-04-04
1
4
2020-07-29
1
5
2023-08-16
_diffrn_source.type
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
RCSB
2001-05-11
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
HOH
water
1QLP
PDB entry 1QLP
PDB
experimental model
NAG
401
2
NAG
NAG
401
A
HOH
501
3
HOH
HOH
501
A
HOH
502
3
HOH
HOH
502
A
HOH
503
3
HOH
HOH
503
A
HOH
504
3
HOH
HOH
504
A
HOH
505
3
HOH
HOH
505
A
HOH
506
3
HOH
HOH
506
A
HOH
507
3
HOH
HOH
507
A
HOH
508
3
HOH
HOH
508
A
HOH
509
3
HOH
HOH
509
A
HOH
510
3
HOH
HOH
510
A
HOH
511
3
HOH
HOH
511
A
HOH
512
3
HOH
HOH
512
A
HOH
513
3
HOH
HOH
513
A
HOH
514
3
HOH
HOH
514
A
HOH
515
3
HOH
HOH
515
A
HOH
516
3
HOH
HOH
516
A
HOH
517
3
HOH
HOH
517
A
HOH
518
3
HOH
HOH
518
A
HOH
519
3
HOH
HOH
519
A
HOH
520
3
HOH
HOH
520
A
HOH
521
3
HOH
HOH
521
A
HOH
522
3
HOH
HOH
522
A
HOH
523
3
HOH
HOH
523
A
HOH
524
3
HOH
HOH
524
A
HOH
525
3
HOH
HOH
525
A
HOH
527
3
HOH
HOH
526
A
HOH
528
3
HOH
HOH
527
A
HOH
529
3
HOH
HOH
528
A
HOH
530
3
HOH
HOH
529
A
HOH
531
3
HOH
HOH
530
A
HOH
532
3
HOH
HOH
531
A
HOH
533
3
HOH
HOH
532
A
HOH
534
3
HOH
HOH
533
A
HOH
535
3
HOH
HOH
534
A
HOH
536
3
HOH
HOH
535
A
HOH
537
3
HOH
HOH
536
A
HOH
538
3
HOH
HOH
537
A
HOH
539
3
HOH
HOH
538
A
HOH
540
3
HOH
HOH
539
A
HOH
541
3
HOH
HOH
540
A
HOH
542
3
HOH
HOH
541
A
HOH
544
3
HOH
HOH
542
A
HOH
545
3
HOH
HOH
543
A
HOH
546
3
HOH
HOH
544
A
HOH
547
3
HOH
HOH
545
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
THR
16
n
16
THR
16
A
GLY
17
n
17
GLY
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
VAL
20
n
20
VAL
20
A
GLU
21
n
21
GLU
21
A
GLU
22
n
22
GLU
22
A
GLU
23
n
23
GLU
23
A
ASP
24
n
24
ASP
24
A
PRO
25
n
25
PRO
25
A
PHE
26
n
26
PHE
26
A
PHE
27
n
27
PHE
27
A
LYS
28
n
28
LYS
28
A
VAL
29
n
29
VAL
29
A
PRO
30
n
30
PRO
30
A
VAL
31
n
31
VAL
31
A
ASN
32
n
32
ASN
32
A
LYS
33
n
33
LYS
33
A
LEU
34
n
34
LEU
34
A
ALA
35
n
35
ALA
35
A
ALA
36
n
36
ALA
36
A
ALA
37
n
37
ALA
37
A
VAL
38
n
38
VAL
38
A
SER
39
n
39
SER
39
A
ASN
40
n
40
ASN
40
A
PHE
41
n
41
PHE
41
A
GLY
42
n
42
GLY
42
A
TYR
43
n
43
TYR
43
A
ASP
44
n
44
ASP
44
A
LEU
45
n
45
LEU
45
A
TYR
46
n
46
TYR
46
A
ARG
47
n
47
ARG
47
A
VAL
48
n
48
VAL
48
A
ARG
49
n
49
ARG
49
A
SER
50
n
50
SER
50
A
SER
51
n
51
SER
51
A
MET
52
n
52
MET
52
A
SER
53
n
53
SER
53
A
PRO
54
n
54
PRO
54
A
THR
55
n
55
THR
55
A
THR
56
n
56
THR
56
A
ASN
57
n
57
ASN
57
A
VAL
58
n
58
VAL
58
A
LEU
59
n
59
LEU
59
A
LEU
60
n
60
LEU
60
A
SER
61
n
61
SER
61
A
PRO
62
n
62
PRO
62
A
LEU
63
n
63
LEU
63
A
SER
64
n
64
SER
64
A
VAL
65
n
65
VAL
65
A
ALA
66
n
66
ALA
66
A
THR
67
n
67
THR
67
A
ALA
68
n
68
ALA
68
A
LEU
69
n
69
LEU
69
A
SER
70
n
70
SER
70
A
ALA
71
n
71
ALA
71
A
LEU
72
n
72
LEU
72
A
SER
73
n
73
SER
73
A
LEU
74
n
74
LEU
74
A
GLY
75
n
75
GLY
75
A
ALA
76
n
76
ALA
76
A
ASP
77
n
77
ASP
77
A
GLU
78
n
78
GLU
78
A
ARG
79
n
79
ARG
79
A
THR
80
n
80
THR
80
A
GLU
81
n
81
GLU
81
A
SER
82
n
82
SER
82
A
ILE
83
n
83
ILE
83
A
ILE
84
n
84
ILE
84
A
HIS
85
n
85
HIS
85
A
ARG
86
n
86
ARG
86
A
ALA
87
n
87
ALA
87
A
LEU
88
n
88
LEU
88
A
TYR
89
n
89
TYR
89
A
TYR
90
n
90
TYR
90
A
ASP
91
n
91
ASP
91
A
LEU
92
n
92
LEU
92
A
ILE
93
n
93
ILE
93
A
SER
94
n
94
SER
94
A
SER
95
n
95
SER
95
A
PRO
96
n
96
PRO
96
A
ASP
97
n
97
ASP
97
A
ILE
98
n
98
ILE
98
A
HIS
99
n
99
HIS
99
A
GLY
100
n
100
GLY
100
A
THR
101
n
101
THR
101
A
TYR
102
n
102
TYR
102
A
LYS
103
n
103
LYS
103
A
GLU
104
n
104
GLU
104
A
LEU
105
n
105
LEU
105
A
LEU
106
n
106
LEU
106
A
ASP
107
n
107
ASP
107
A
THR
108
n
108
THR
108
A
VAL
109
n
109
VAL
109
A
THR
110
n
110
THR
110
A
ALA
111
n
111
ALA
111
A
PRO
112
n
112
PRO
112
A
GLN
113
n
113
GLN
113
A
LYS
114
n
114
LYS
114
A
ASN
115
n
115
ASN
115
A
LEU
116
n
116
LEU
116
A
LYS
117
n
117
LYS
117
A
SER
118
n
118
SER
118
A
ALA
119
n
119
ALA
119
A
SER
120
n
120
SER
120
A
ARG
121
n
121
ARG
121
A
ILE
122
n
122
ILE
122
A
VAL
123
n
123
VAL
123
A
PHE
124
n
124
PHE
124
A
GLU
125
n
125
GLU
125
A
LYS
126
n
126
LYS
126
A
LYS
127
n
127
LYS
127
A
LEU
128
n
128
LEU
128
A
ARG
129
n
129
ARG
129
A
ILE
130
n
130
ILE
130
A
LYS
131
n
131
LYS
131
A
SER
132
n
132
SER
132
A
SER
133
n
133
SER
133
A
PHE
134
n
134
PHE
134
A
VAL
135
n
135
VAL
135
A
ALA
136
n
136
ALA
136
A
PRO
137
n
137
PRO
137
A
LEU
138
n
138
LEU
138
A
GLU
139
n
139
GLU
139
A
LYS
140
n
140
LYS
140
A
SER
141
n
141
SER
141
A
TYR
142
n
142
TYR
142
A
GLY
143
n
143
GLY
143
A
THR
144
n
144
THR
144
A
ARG
145
n
145
ARG
145
A
PRO
146
n
146
PRO
146
A
ARG
147
n
147
ARG
147
A
VAL
148
n
148
VAL
148
A
LEU
149
n
149
LEU
149
A
THR
150
n
150
THR
150
A
GLY
151
n
151
GLY
151
A
ASN
152
n
152
ASN
152
A
PRO
153
n
153
PRO
153
A
ARG
154
n
154
ARG
154
A
LEU
155
n
155
LEU
155
A
ASP
156
n
156
ASP
156
A
LEU
157
n
157
LEU
157
A
GLN
158
n
158
GLN
158
A
GLU
159
n
159
GLU
159
A
ILE
160
n
160
ILE
160
A
ASN
161
n
161
ASN
161
A
ASN
162
n
162
ASN
162
A
TRP
163
n
163
TRP
163
A
VAL
164
n
164
VAL
164
A
GLN
165
n
165
GLN
165
A
ALA
166
n
166
ALA
166
A
GLN
167
n
167
GLN
167
A
MET
168
n
168
MET
168
A
LYS
169
n
169
LYS
169
A
GLY
170
n
170
GLY
170
A
LYS
171
n
171
LYS
171
A
LEU
172
n
172
LEU
172
A
ALA
173
n
173
ALA
173
A
ARG
174
n
174
ARG
174
A
SER
175
n
175
SER
175
A
THR
176
n
176
THR
176
A
LYS
177
n
177
LYS
177
A
GLU
178
n
178
GLU
178
A
ILE
179
n
179
ILE
179
A
PRO
180
n
180
PRO
180
A
ASP
181
n
181
ASP
181
A
GLU
182
n
182
GLU
182
A
ILE
183
n
183
ILE
183
A
SER
184
n
184
SER
184
A
ILE
185
n
185
ILE
185
A
LEU
186
n
186
LEU
186
A
LEU
187
n
187
LEU
187
A
LEU
188
n
188
LEU
188
A
GLY
189
n
189
GLY
189
A
VAL
190
n
190
VAL
190
A
ALA
191
n
191
ALA
191
A
HIS
192
n
192
HIS
192
A
PHE
193
n
193
PHE
193
A
LYS
194
n
194
LYS
194
A
GLY
195
n
195
GLY
195
A
GLN
196
n
196
GLN
196
A
TRP
197
n
197
TRP
197
A
VAL
198
n
198
VAL
198
A
THR
199
n
199
THR
199
A
LYS
200
n
200
LYS
200
A
PHE
201
n
201
PHE
201
A
ASP
202
n
202
ASP
202
A
SER
203
n
203
SER
203
A
ARG
204
n
204
ARG
204
A
LYS
205
n
205
LYS
205
A
THR
206
n
206
THR
206
A
SER
207
n
207
SER
207
A
LEU
208
n
208
LEU
208
A
GLU
209
n
209
GLU
209
A
ASP
210
n
210
ASP
210
A
PHE
211
n
211
PHE
211
A
TYR
212
n
212
TYR
212
A
LEU
213
n
213
LEU
213
A
ASP
214
n
214
ASP
214
A
GLU
215
n
215
GLU
215
A
GLU
216
n
216
GLU
216
A
ARG
217
n
217
ARG
217
A
THR
218
n
218
THR
218
A
VAL
219
n
219
VAL
219
A
ARG
220
n
220
ARG
220
A
VAL
221
n
221
VAL
221
A
PRO
222
n
222
PRO
222
A
MET
223
n
223
MET
223
A
MET
224
n
224
MET
224
A
SER
225
n
225
SER
225
A
ASP
226
n
226
ASP
226
A
PRO
227
n
227
PRO
227
A
LYS
228
n
228
LYS
228
A
ALA
229
n
229
ALA
229
A
VAL
230
n
230
VAL
230
A
LEU
231
n
231
LEU
231
A
ARG
232
n
232
ARG
232
A
TYR
233
n
233
TYR
233
A
GLY
234
n
234
GLY
234
A
LEU
235
n
235
LEU
235
A
ASP
236
n
236
ASP
236
A
SER
237
n
237
SER
237
A
ASP
238
n
238
ASP
238
A
LEU
239
n
239
LEU
239
A
SER
240
n
240
SER
240
A
CYS
241
n
241
CYS
241
A
LYS
242
n
242
LYS
242
A
ILE
243
n
243
ILE
243
A
ALA
244
n
244
ALA
244
A
GLN
245
n
245
GLN
245
A
LEU
246
n
246
LEU
246
A
PRO
247
n
247
PRO
247
A
LEU
248
n
248
LEU
248
A
THR
249
n
249
THR
249
A
GLY
250
n
250
GLY
250
A
SER
251
n
251
SER
251
A
MET
252
n
252
MET
252
A
SER
253
n
253
SER
253
A
ILE
254
n
254
ILE
254
A
ILE
255
n
255
ILE
255
A
PHE
256
n
256
PHE
256
A
PHE
257
n
257
PHE
257
A
LEU
258
n
258
LEU
258
A
PRO
259
n
259
PRO
259
A
LEU
260
n
260
LEU
260
A
LYS
261
n
261
LYS
261
A
VAL
262
n
262
VAL
262
A
THR
263
n
263
THR
263
A
GLN
264
n
264
GLN
264
A
ASN
265
n
265
ASN
265
A
LEU
266
n
266
LEU
266
A
THR
267
n
267
THR
267
A
LEU
268
n
268
LEU
268
A
ILE
269
n
269
ILE
269
A
GLU
270
n
270
GLU
270
A
GLU
271
n
271
GLU
271
A
SER
272
n
272
SER
272
A
LEU
273
n
273
LEU
273
A
THR
274
n
274
THR
274
A
SER
275
n
275
SER
275
A
GLU
276
n
276
GLU
276
A
PHE
277
n
277
PHE
277
A
ILE
278
n
278
ILE
278
A
HIS
279
n
279
HIS
279
A
ASP
280
n
280
ASP
280
A
ILE
281
n
281
ILE
281
A
ASP
282
n
282
ASP
282
A
ARG
283
n
283
ARG
283
A
GLU
284
n
284
GLU
284
A
LEU
285
n
285
LEU
285
A
LYS
286
n
286
LYS
286
A
THR
287
n
287
THR
287
A
VAL
288
n
288
VAL
288
A
GLN
289
n
289
GLN
289
A
ALA
290
n
290
ALA
290
A
VAL
291
n
291
VAL
291
A
LEU
292
n
292
LEU
292
A
THR
293
n
293
THR
293
A
VAL
294
n
294
VAL
294
A
PRO
295
n
295
PRO
295
A
LYS
296
n
296
LYS
296
A
LEU
297
n
297
LEU
297
A
LYS
298
n
298
LYS
298
A
LEU
299
n
299
LEU
299
A
SER
300
n
300
SER
300
A
TYR
301
n
301
TYR
301
A
GLU
302
n
302
GLU
302
A
GLY
303
n
303
GLY
303
A
GLU
304
n
304
GLU
304
A
VAL
305
n
305
VAL
305
A
THR
306
n
306
THR
306
A
LYS
307
n
307
LYS
307
A
SER
308
n
308
SER
308
A
LEU
309
n
309
LEU
309
A
GLN
310
n
310
GLN
310
A
GLU
311
n
311
GLU
311
A
MET
312
n
312
MET
312
A
LYS
313
n
313
LYS
313
A
LEU
314
n
314
LEU
314
A
GLN
315
n
315
GLN
315
A
SER
316
n
316
SER
316
A
LEU
317
n
317
LEU
317
A
PHE
318
n
318
PHE
318
A
ASP
319
n
319
ASP
319
A
SER
320
n
320
SER
320
A
PRO
321
n
321
PRO
321
A
ASP
322
n
322
ASP
322
A
PHE
323
n
323
PHE
323
A
SER
324
n
324
SER
324
A
LYS
325
n
325
LYS
325
A
ILE
326
n
326
ILE
326
A
THR
327
n
327
THR
327
A
GLY
328
n
328
GLY
328
A
LYS
329
n
329
LYS
329
A
PRO
330
n
330
PRO
330
A
ILE
331
n
331
ILE
331
A
LYS
332
n
332
LYS
332
A
LEU
333
n
333
LEU
333
A
THR
334
n
334
THR
334
A
GLN
335
n
335
GLN
335
A
VAL
336
n
336
VAL
336
A
GLU
337
n
337
GLU
337
A
HIS
338
n
338
HIS
338
A
ARG
339
n
339
ARG
339
A
ALA
340
n
340
ALA
340
A
GLY
341
n
341
GLY
341
A
PHE
342
n
342
PHE
342
A
GLU
343
n
343
GLU
343
A
TRP
344
n
344
TRP
344
A
ASN
345
n
345
ASN
345
A
GLU
346
n
346
GLU
346
A
ASP
347
n
347
ASP
347
A
GLY
348
n
348
GLY
348
A
ALA
349
n
349
ALA
349
A
GLY
350
n
350
GLY
350
A
THR
351
n
351
THR
351
A
THR
352
n
352
THR
352
A
n
353
353
A
n
354
354
A
n
355
355
A
n
356
356
A
n
357
357
A
n
358
358
A
n
359
359
A
n
360
360
A
HIS
361
n
361
HIS
361
A
LEU
362
n
362
LEU
362
A
THR
363
n
363
THR
363
A
PHE
364
n
364
PHE
364
A
PRO
365
n
365
PRO
365
A
LEU
366
n
366
LEU
366
A
ASP
367
n
367
ASP
367
A
TYR
368
n
368
TYR
368
A
HIS
369
n
369
HIS
369
A
LEU
370
n
370
LEU
370
A
ASN
371
n
371
ASN
371
A
GLN
372
n
372
GLN
372
A
PRO
373
n
373
PRO
373
A
PHE
374
n
374
PHE
374
A
ILE
375
n
375
ILE
375
A
PHE
376
n
376
PHE
376
A
VAL
377
n
377
VAL
377
A
LEU
378
n
378
LEU
378
A
ARG
379
n
379
ARG
379
A
ASP
380
n
380
ASP
380
A
THR
381
n
381
THR
381
A
ASP
382
n
382
ASP
382
A
THR
383
n
383
THR
383
A
GLY
384
n
384
GLY
384
A
ALA
385
n
385
ALA
385
A
LEU
386
n
386
LEU
386
A
LEU
387
n
387
LEU
387
A
PHE
388
n
388
PHE
388
A
ILE
389
n
389
ILE
389
A
GLY
390
n
390
GLY
390
A
LYS
391
n
391
LYS
391
A
ILE
392
n
392
ILE
392
A
LEU
393
n
393
LEU
393
A
ASP
394
n
394
ASP
394
A
PRO
395
n
395
PRO
395
A
ARG
396
n
396
ARG
396
A
GLY
397
n
397
GLY
397
A
PRO
398
n
398
PRO
398
A
author_defined_assembly
1
monomeric
A
ASN
265
GLYCOSYLATION SITE
A
ASN
265
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
368
A
N
TYR
368
A
O
VAL
291
A
O
VAL
291
A
O
VAL
294
A
O
VAL
294
A
N
MET
224
A
N
MET
224
A
N
MET
223
A
N
MET
223
A
O
SER
207
A
O
SER
207
A
N
TYR
368
A
N
TYR
368
A
O
VAL
291
A
O
VAL
291
A
O
VAL
294
A
O
VAL
294
A
N
MET
224
A
N
MET
224
A
N
ASP
236
A
N
ASP
236
A
O
CYS
241
A
O
CYS
241
A
N
LEU
248
A
N
LEU
248
A
O
MET
252
A
O
MET
252
A
N
PHE
257
A
N
PHE
257
A
O
ILE
375
A
O
ILE
375
A
O
LEU
378
A
O
LEU
378
A
N
LEU
387
A
N
LEU
387
A
O
LYS
391
A
O
LYS
391
A
N
VAL
58
A
N
VAL
58
A
N
ARG
147
A
N
ARG
147
A
O
ILE
122
A
O
ILE
122
A
N
VAL
123
A
N
VAL
123
A
O
LEU
186
A
O
LEU
186
A
O
ILE
185
A
O
ILE
185
A
N
THR
334
A
N
THR
334
A
N
TRP
344
A
N
TRP
344
A
O
LEU
297
A
O
LEU
297
A
O
TRP
197
A
O
TRP
197
A
N
ALA
349
A
N
ALA
349
1
A
OG1
THR
16
A
OG1
THR
16
1
Y
1
A
CG2
THR
16
A
CG2
THR
16
1
Y
1
A
CG
ARG
79
A
CG
ARG
79
1
Y
1
A
CD
ARG
79
A
CD
ARG
79
1
Y
1
A
NE
ARG
79
A
NE
ARG
79
1
Y
1
A
CZ
ARG
79
A
CZ
ARG
79
1
Y
1
A
NH1
ARG
79
A
NH1
ARG
79
1
Y
1
A
NH2
ARG
79
A
NH2
ARG
79
1
Y
1
A
CG
LYS
126
A
CG
LYS
126
1
Y
1
A
CD
LYS
126
A
CD
LYS
126
1
Y
1
A
CE
LYS
126
A
CE
LYS
126
1
Y
1
A
NZ
LYS
126
A
NZ
LYS
126
1
Y
1
A
CG
LYS
127
A
CG
LYS
127
1
Y
1
A
CD
LYS
127
A
CD
LYS
127
1
Y
1
A
CE
LYS
127
A
CE
LYS
127
1
Y
1
A
NZ
LYS
127
A
NZ
LYS
127
1
Y
1
A
CG
ARG
174
A
CG
ARG
174
1
Y
1
A
CD
ARG
174
A
CD
ARG
174
1
Y
1
A
NE
ARG
174
A
NE
ARG
174
1
Y
1
A
CZ
ARG
174
A
CZ
ARG
174
1
Y
1
A
NH1
ARG
174
A
NH1
ARG
174
1
Y
1
A
NH2
ARG
174
A
NH2
ARG
174
1
Y
1
A
CG
LYS
177
A
CG
LYS
177
1
Y
1
A
CD
LYS
177
A
CD
LYS
177
1
Y
1
A
CE
LYS
177
A
CE
LYS
177
1
Y
1
A
NZ
LYS
177
A
NZ
LYS
177
1
Y
1
A
CG
GLU
178
A
CG
GLU
178
1
Y
1
A
CD
GLU
178
A
CD
GLU
178
1
Y
1
A
OE1
GLU
178
A
OE1
GLU
178
1
Y
1
A
OE2
GLU
178
A
OE2
GLU
178
1
Y
1
A
CG
ASP
181
A
CG
ASP
181
1
Y
1
A
OD1
ASP
181
A
OD1
ASP
181
1
Y
1
A
OD2
ASP
181
A
OD2
ASP
181
1
Y
1
A
CG
GLU
182
A
CG
GLU
182
1
Y
1
A
CD
GLU
182
A
CD
GLU
182
1
Y
1
A
OE1
GLU
182
A
OE1
GLU
182
1
Y
1
A
OE2
GLU
182
A
OE2
GLU
182
1
Y
1
A
CG
LYS
228
A
CG
LYS
228
1
Y
1
A
CD
LYS
228
A
CD
LYS
228
1
Y
1
A
CE
LYS
228
A
CE
LYS
228
1
Y
1
A
NZ
LYS
228
A
NZ
LYS
228
1
Y
1
A
OG1
THR
352
A
OG1
THR
352
1
Y
1
A
CG2
THR
352
A
CG2
THR
352
1
Y
1
A
ASN
1
A
ASN
1
1
Y
1
A
PRO
2
A
PRO
2
1
Y
1
A
ALA
3
A
ALA
3
1
Y
1
A
SER
4
A
SER
4
1
Y
1
A
PRO
5
A
PRO
5
1
Y
1
A
PRO
6
A
PRO
6
1
Y
1
A
GLU
7
A
GLU
7
1
Y
1
A
GLU
8
A
GLU
8
1
Y
1
A
GLY
9
A
GLY
9
1
Y
1
A
SER
10
A
SER
10
1
Y
1
A
PRO
11
A
PRO
11
1
Y
1
A
ASP
12
A
ASP
12
1
Y
1
A
PRO
13
A
PRO
13
1
Y
1
A
ASP
14
A
ASP
14
1
Y
1
A
SER
15
A
SER
15
1
Y
1
A
PRO
353
A
PRO
353
1
Y
1
A
SER
354
A
SER
354
1
Y
1
A
PRO
355
A
PRO
355
1
Y
1
A
GLY
356
A
GLY
356
1
Y
1
A
LEU
357
A
LEU
357
1
Y
1
A
GLN
358
A
GLN
358
1
Y
1
A
PRO
359
A
PRO
359
1
Y
1
A
ALA
360
A
ALA
360
1
Y
1
9.74
1.50
119.30
129.04
A
A
A
C
N
CA
SER
PRO
PRO
61
62
62
Y
1
A
SER
53
-113.74
75.48
1
A
PRO
62
-39.00
-38.99
1
A
SER
73
-56.01
-4.22
1
A
GLU
78
-10.66
-81.45
1
A
ASP
91
-66.87
1.98
1
A
PRO
96
-75.20
-162.06
1
A
ASP
97
31.43
54.83
1
A
LYS
127
50.33
7.19
1
A
THR
176
-158.61
55.88
1
A
GLU
178
69.75
110.67
1
A
SER
184
-108.00
-69.64
1
A
ASP
214
176.23
178.78
1
A
ASP
226
-161.13
99.39
1
A
LEU
273
-53.24
108.42
1
A
GLU
311
-101.68
40.02
1
A
ASP
319
-85.34
-97.92
1
A
LEU
362
74.96
121.16
1
A
THR
363
-129.60
-167.53
1
A
LEU
366
-164.00
114.81
1
A
ARG
396
-55.57
-7.34
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
CARBOHYDRATE.PARAM
CARBOHYDRATE.PARAM
WATER.PARAM
31.4
-3.92
0.00
0.00
7.44
0.00
-3.52
Residues 1-15 and 353-360 are missing/disordered.
The side chains of the following residues are disordered:
THR16, ARG79, LYS126, LYS127, ARG174, LYS177, GLU178, ASP181,
GLU182, LYS228, THR352.
0.2270000
0.007
0.1880000
2.85
36.74
1167
11241
11241
10.4
91.2
RANDOM
200608.11
0.00
1,2,3
RESTRAINED
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
PDB entry 1QLP
Engh & Huber
FLAT MODEL
36.78
0.320
0.37
0.30
5.00
0.47
0.43
2.85
36.74
45
2982
14
0
2923
0.007
1.3
24.1
0.79
1.25
1.50
2.19
2.00
1.84
2.00
2.98
2.50
0.3400000
0.029
0.3010000
3.03
140
1166
1166
6
10.7
65.4
45.2
2.85
36.74
1IMV
11214
11214
0
0
0.1270000
1,2,3
8.5
12.7
92.1
0.3700000
2.85
3.03
1166
1,2,3
3
65.4
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
2.85 A crystal structure of PEDF
1
N
N
2
N
N
3
N
N
A
ASP
24
A
ASP
24
HELX_P
A
VAL
29
A
VAL
29
1
1
6
A
VAL
29
A
VAL
29
HELX_P
A
SER
53
A
SER
53
1
2
25
A
SER
61
A
SER
61
HELX_P
A
SER
73
A
SER
73
1
3
13
A
LEU
74
A
LEU
74
HELX_P
A
ALA
76
A
ALA
76
5
4
3
A
ASP
77
A
ASP
77
HELX_P
A
LEU
88
A
LEU
88
1
5
12
A
TYR
89
A
TYR
89
HELX_P
A
ILE
93
A
ILE
93
5
6
5
A
ASP
97
A
ASP
97
HELX_P
A
THR
110
A
THR
110
1
7
14
A
LYS
131
A
LYS
131
HELX_P
A
GLY
143
A
GLY
143
1
8
13
A
ASN
152
A
ASN
152
HELX_P
A
MET
168
A
MET
168
1
9
17
A
ASP
202
A
ASP
202
HELX_P
A
THR
206
A
THR
206
5
10
5
A
LEU
266
A
LEU
266
HELX_P
A
GLU
271
A
GLU
271
1
11
6
A
THR
274
A
THR
274
HELX_P
A
LEU
285
A
LEU
285
1
12
12
A
VAL
305
A
VAL
305
HELX_P
A
GLU
311
A
GLU
311
1
13
7
A
GLN
315
A
GLN
315
HELX_P
A
SER
320
A
SER
320
1
14
6
covale
1.452
one
N-Glycosylation
A
ASN
265
A
ND2
ASN
265
1_555
A
NAG
401
B
C1
NAG
1_555
SIGNALING PROTEIN
serpin, PEDF, angiogenesis, SIGNALING PROTEIN
PEDF_HUMAN
UNP
1
21
P36955
NPASPPEEGSPDPDSTGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTTNVLLSPLSVATALSALSLGADERT
ESIIHRALYYDLISSPDIHGTYKELLDTVTAPQKNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGNPRLDLQEI
NNWVQAQMKGKLARSTKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVLRYGLDSDLS
CKIAQLPLTGSMSIIFFLPLKVTQNLTLIEESLTSEFIHDIDRELKTVQAVLTVPKLKLSYEGEVTKSLQEMKLQSLFDS
PDFSKITGKPIKLTQVEHRAGFEWNEDGAGTTPSPGLQPAHLTFPLDYHLNQPFIFVLRDTDTGALLFIGKILDPRGP
21
418
1IMV
1
398
P36955
A
1
1
398
4
8
5
2
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
parallel
A
ASP
367
A
ASP
367
A
HIS
369
A
HIS
369
A
LYS
286
A
LYS
286
A
PRO
295
A
PRO
295
A
THR
218
A
THR
218
A
ASP
236
A
ASP
236
A
SER
207
A
SER
207
A
TYR
212
A
TYR
212
A
ASP
367
A
ASP
367
A
HIS
369
A
HIS
369
A
LYS
286
A
LYS
286
A
PRO
295
A
PRO
295
A
THR
218
A
THR
218
A
ASP
236
A
ASP
236
A
CYS
241
A
CYS
241
A
LEU
248
A
LEU
248
A
MET
252
A
MET
252
A
PRO
259
A
PRO
259
A
PHE
374
A
PHE
374
A
ASP
380
A
ASP
380
A
LEU
386
A
LEU
386
A
ILE
392
A
ILE
392
A
VAL
58
A
VAL
58
A
LEU
60
A
LEU
60
A
ARG
147
A
ARG
147
A
VAL
148
A
VAL
148
A
LEU
116
A
LEU
116
A
PHE
124
A
PHE
124
A
ILE
185
A
ILE
185
A
LYS
194
A
LYS
194
A
LEU
333
A
LEU
333
A
TRP
344
A
TRP
344
A
LEU
297
A
LEU
297
A
GLU
304
A
GLU
304
A
TRP
197
A
TRP
197
A
THR
199
A
THR
199
A
GLY
348
A
GLY
348
A
GLY
350
A
GLY
350
18
P 21 21 2