0.022967 0.000000 0.000000 0.000000 0.013701 0.000000 0.000000 0.000000 0.012768 0.00000 0.00000 0.00000 Muroya, A. Tsuchiya, D. Ishikawa, M. Haruki, M. Morikawa, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 43.540 72.990 78.320 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N O N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N N N 94 N C N 95 N C N 96 N O N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N N N 104 S C N 105 N C N 106 N O N 107 N C Y 108 N C Y 109 N N Y 110 N C Y 111 N C Y 112 N N N 113 N O N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N H N 126 N H N 127 N N N 128 S C N 129 N C N 130 N O N 131 S C N 132 N C N 133 N C N 134 N C N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N N N 150 S C N 151 N C N 152 N O N 153 N C N 154 N C N 155 N C N 156 N C N 157 N O N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 N C N 176 N C N 177 N C N 178 N C N 179 N N N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N N N 197 S C N 198 N C N 199 N O N 200 N C N 201 N C N 202 N S N 203 N C N 204 N O N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C Y 221 N C Y 222 N C Y 223 N C Y 224 N C Y 225 N C Y 226 N C N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N N N 240 S C N 241 N C N 242 N O N 243 N C N 244 N C N 245 N C N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 N C N 261 N O N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 R C N 275 N O N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C Y 292 N C Y 293 N C Y 294 N C Y 295 N N Y 296 N C Y 297 N C Y 298 N C Y 299 N C Y 300 N C N 301 N O N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 N C Y 319 N C Y 320 N C Y 321 N C Y 322 N C Y 323 N C Y 324 N C N 325 N O N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C N 343 N C N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N doub N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing Y 108 N sing Y 109 N doub Y 110 N doub N 111 N sing Y 112 N sing N 113 N sing Y 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N doub N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing Y 216 N doub Y 217 N sing Y 218 N sing N 219 N sing Y 220 N doub N 221 N sing Y 222 N doub N 223 N sing Y 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing Y 285 N doub Y 286 N sing Y 287 N sing N 288 N sing Y 289 N doub Y 290 N sing Y 291 N sing N 292 N sing Y 293 N sing Y 294 N doub N 295 N sing Y 296 N doub N 297 N sing Y 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing Y 313 N doub Y 314 N sing Y 315 N sing N 316 N sing Y 317 N doub N 318 N sing Y 319 N doub N 320 N sing Y 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing US Protein Sci. PRCIEI 0795 0961-8368 10 707 714 10.1110/ps.48001 11274461 Catalytic center of an archaeal type 2 ribonuclease H as revealed by X-ray crystallographic and mutational analyses. 2001 10.2210/pdb1io2/pdb pdb_00001io2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 MONOCHROMETER IMAGE PLATE 1999-11-19 FUJI SI SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 BL-6A Photon Factory 1.0000 1.0000 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 23974.449 RIBONUCLEASE HII 3.1.26.4 RESIDUES 1-213 1 man polymer 18.015 water 216 nat water no no MKIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGTL NEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLK EEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKIAEKVESEKK MKIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGTL NEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLK EEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKIAEKVESEKK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermococcus Thermococcus kodakarensis KOD1 Escherichia sample RNHB 69014 Thermococcus kodakarensis 562 Escherichia coli HB101 PLASMID PJAL700K 1 2.59 52.59 VAPOR DIFFUSION, HANGING DROP 6.50 PEG 6000, pH 6.50, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K 293.0 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Source and taxonomy Version format compliance Data collection Database references 1 0 2001-04-18 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y PDBJ 2000-12-28 REL REL HOH water WAT 301 2 HOH HOH 301 A WAT 302 2 HOH HOH 302 A WAT 303 2 HOH HOH 303 A WAT 304 2 HOH HOH 304 A WAT 305 2 HOH HOH 305 A WAT 306 2 HOH HOH 306 A WAT 307 2 HOH HOH 307 A WAT 308 2 HOH HOH 308 A WAT 309 2 HOH HOH 309 A WAT 310 2 HOH HOH 310 A WAT 311 2 HOH HOH 311 A WAT 312 2 HOH HOH 312 A WAT 313 2 HOH HOH 313 A WAT 314 2 HOH HOH 314 A WAT 315 2 HOH HOH 315 A WAT 316 2 HOH HOH 316 A WAT 317 2 HOH HOH 317 A WAT 318 2 HOH HOH 318 A WAT 319 2 HOH HOH 319 A WAT 320 2 HOH HOH 320 A WAT 321 2 HOH HOH 321 A WAT 322 2 HOH HOH 322 A WAT 323 2 HOH HOH 323 A WAT 324 2 HOH HOH 324 A WAT 325 2 HOH HOH 325 A WAT 326 2 HOH HOH 326 A WAT 327 2 HOH HOH 327 A WAT 328 2 HOH HOH 328 A WAT 329 2 HOH HOH 329 A WAT 330 2 HOH HOH 330 A WAT 331 2 HOH HOH 331 A WAT 332 2 HOH HOH 332 A WAT 333 2 HOH HOH 333 A WAT 334 2 HOH HOH 334 A WAT 335 2 HOH HOH 335 A WAT 336 2 HOH HOH 336 A WAT 337 2 HOH HOH 337 A WAT 338 2 HOH HOH 338 A WAT 339 2 HOH HOH 339 A WAT 340 2 HOH HOH 340 A WAT 341 2 HOH HOH 341 A WAT 342 2 HOH HOH 342 A WAT 343 2 HOH HOH 343 A WAT 344 2 HOH HOH 344 A WAT 345 2 HOH HOH 345 A WAT 346 2 HOH HOH 346 A WAT 347 2 HOH HOH 347 A WAT 348 2 HOH HOH 348 A WAT 349 2 HOH HOH 349 A WAT 350 2 HOH HOH 350 A WAT 351 2 HOH HOH 351 A WAT 352 2 HOH HOH 352 A WAT 353 2 HOH HOH 353 A WAT 354 2 HOH HOH 354 A WAT 355 2 HOH HOH 355 A WAT 356 2 HOH HOH 356 A WAT 357 2 HOH HOH 357 A WAT 358 2 HOH HOH 358 A WAT 359 2 HOH HOH 359 A WAT 360 2 HOH HOH 360 A WAT 361 2 HOH HOH 361 A WAT 362 2 HOH HOH 362 A WAT 363 2 HOH HOH 363 A WAT 364 2 HOH HOH 364 A WAT 365 2 HOH HOH 365 A WAT 366 2 HOH HOH 366 A WAT 367 2 HOH HOH 367 A WAT 368 2 HOH HOH 368 A WAT 369 2 HOH HOH 369 A WAT 370 2 HOH HOH 370 A WAT 371 2 HOH HOH 371 A WAT 372 2 HOH HOH 372 A WAT 373 2 HOH HOH 373 A WAT 374 2 HOH HOH 374 A WAT 375 2 HOH HOH 375 A WAT 376 2 HOH HOH 376 A WAT 377 2 HOH HOH 377 A WAT 378 2 HOH HOH 378 A WAT 379 2 HOH HOH 379 A WAT 380 2 HOH HOH 380 A WAT 381 2 HOH HOH 381 A WAT 382 2 HOH HOH 382 A WAT 383 2 HOH HOH 383 A WAT 384 2 HOH HOH 384 A WAT 385 2 HOH HOH 385 A WAT 386 2 HOH HOH 386 A WAT 387 2 HOH HOH 387 A WAT 388 2 HOH HOH 388 A WAT 389 2 HOH HOH 389 A WAT 390 2 HOH HOH 390 A WAT 391 2 HOH HOH 391 A WAT 392 2 HOH HOH 392 A WAT 393 2 HOH HOH 393 A WAT 394 2 HOH HOH 394 A WAT 395 2 HOH HOH 395 A WAT 396 2 HOH HOH 396 A WAT 397 2 HOH HOH 397 A WAT 398 2 HOH HOH 398 A WAT 399 2 HOH HOH 399 A WAT 400 2 HOH HOH 400 A WAT 401 2 HOH HOH 401 A WAT 402 2 HOH HOH 402 A WAT 403 2 HOH HOH 403 A WAT 404 2 HOH HOH 404 A WAT 405 2 HOH HOH 405 A WAT 406 2 HOH HOH 406 A WAT 407 2 HOH HOH 407 A WAT 408 2 HOH HOH 408 A WAT 409 2 HOH HOH 409 A WAT 410 2 HOH HOH 410 A WAT 411 2 HOH HOH 411 A WAT 412 2 HOH HOH 412 A WAT 413 2 HOH HOH 413 A WAT 414 2 HOH HOH 414 A WAT 415 2 HOH HOH 415 A WAT 416 2 HOH HOH 416 A WAT 417 2 HOH HOH 417 A WAT 418 2 HOH HOH 418 A WAT 419 2 HOH HOH 419 A WAT 420 2 HOH HOH 420 A WAT 421 2 HOH HOH 421 A WAT 422 2 HOH HOH 422 A WAT 423 2 HOH HOH 423 A WAT 424 2 HOH HOH 424 A WAT 425 2 HOH HOH 425 A WAT 426 2 HOH HOH 426 A WAT 427 2 HOH HOH 427 A WAT 428 2 HOH HOH 428 A WAT 429 2 HOH HOH 429 A WAT 430 2 HOH HOH 430 A WAT 431 2 HOH HOH 431 A WAT 432 2 HOH HOH 432 A WAT 433 2 HOH HOH 433 A WAT 434 2 HOH HOH 434 A WAT 435 2 HOH HOH 435 A WAT 436 2 HOH HOH 436 A WAT 437 2 HOH HOH 437 A WAT 438 2 HOH HOH 438 A WAT 439 2 HOH HOH 439 A WAT 440 2 HOH HOH 440 A WAT 441 2 HOH HOH 441 A WAT 442 2 HOH HOH 442 A WAT 443 2 HOH HOH 443 A WAT 444 2 HOH HOH 444 A WAT 445 2 HOH HOH 445 A WAT 446 2 HOH HOH 446 A WAT 447 2 HOH HOH 447 A WAT 448 2 HOH HOH 448 A WAT 449 2 HOH HOH 449 A WAT 450 2 HOH HOH 450 A WAT 451 2 HOH HOH 451 A WAT 452 2 HOH HOH 452 A WAT 453 2 HOH HOH 453 A WAT 454 2 HOH HOH 454 A WAT 455 2 HOH HOH 455 A WAT 456 2 HOH HOH 456 A WAT 457 2 HOH HOH 457 A WAT 458 2 HOH HOH 458 A WAT 459 2 HOH HOH 459 A WAT 460 2 HOH HOH 460 A WAT 461 2 HOH HOH 461 A WAT 462 2 HOH HOH 462 A WAT 463 2 HOH HOH 463 A WAT 464 2 HOH HOH 464 A WAT 465 2 HOH HOH 465 A WAT 466 2 HOH HOH 466 A WAT 467 2 HOH HOH 467 A WAT 468 2 HOH HOH 468 A WAT 469 2 HOH HOH 469 A WAT 470 2 HOH HOH 470 A WAT 471 2 HOH HOH 471 A WAT 472 2 HOH HOH 472 A WAT 473 2 HOH HOH 473 A WAT 474 2 HOH HOH 474 A WAT 475 2 HOH HOH 475 A WAT 476 2 HOH HOH 476 A WAT 477 2 HOH HOH 477 A WAT 478 2 HOH HOH 478 A WAT 479 2 HOH HOH 479 A WAT 480 2 HOH HOH 480 A WAT 481 2 HOH HOH 481 A WAT 482 2 HOH HOH 482 A WAT 483 2 HOH HOH 483 A WAT 484 2 HOH HOH 484 A WAT 485 2 HOH HOH 485 A WAT 486 2 HOH HOH 486 A WAT 487 2 HOH HOH 487 A WAT 488 2 HOH HOH 488 A WAT 489 2 HOH HOH 489 A WAT 490 2 HOH HOH 490 A WAT 491 2 HOH HOH 491 A WAT 492 2 HOH HOH 492 A WAT 493 2 HOH HOH 493 A WAT 494 2 HOH HOH 494 A WAT 495 2 HOH HOH 495 A WAT 496 2 HOH HOH 496 A WAT 497 2 HOH HOH 497 A WAT 498 2 HOH HOH 498 A WAT 499 2 HOH HOH 499 A WAT 500 2 HOH HOH 500 A WAT 501 2 HOH HOH 501 A WAT 502 2 HOH HOH 502 A WAT 503 2 HOH HOH 503 A WAT 504 2 HOH HOH 504 A WAT 505 2 HOH HOH 505 A WAT 506 2 HOH HOH 506 A WAT 507 2 HOH HOH 507 A WAT 508 2 HOH HOH 508 A WAT 509 2 HOH HOH 509 A WAT 510 2 HOH HOH 510 A WAT 511 2 HOH HOH 511 A WAT 512 2 HOH HOH 512 A WAT 513 2 HOH HOH 513 A WAT 514 2 HOH HOH 514 A WAT 515 2 HOH HOH 515 A WAT 516 2 HOH HOH 516 A MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A ILE 3 n 3 ILE 3 A ALA 4 n 4 ALA 4 A GLY 5 n 5 GLY 5 A ILE 6 n 6 ILE 6 A ASP 7 n 7 ASP 7 A GLU 8 n 8 GLU 8 A ALA 9 n 9 ALA 9 A GLY 10 n 10 GLY 10 A ARG 11 n 11 ARG 11 A GLY 12 n 12 GLY 12 A PRO 13 n 13 PRO 13 A VAL 14 n 14 VAL 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A PRO 17 n 17 PRO 17 A MET 18 n 18 MET 18 A VAL 19 n 19 VAL 19 A ILE 20 n 20 ILE 20 A ALA 21 n 21 ALA 21 A ALA 22 n 22 ALA 22 A VAL 23 n 23 VAL 23 A VAL 24 n 24 VAL 24 A VAL 25 n 25 VAL 25 A ASP 26 n 26 ASP 26 A GLU 27 n 27 GLU 27 A ASN 28 n 28 ASN 28 A SER 29 n 29 SER 29 A LEU 30 n 30 LEU 30 A PRO 31 n 31 PRO 31 A LYS 32 n 32 LYS 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A LEU 36 n 36 LEU 36 A LYS 37 n 37 LYS 37 A VAL 38 n 38 VAL 38 A ARG 39 n 39 ARG 39 A ASP 40 n 40 ASP 40 A SER 41 n 41 SER 41 A LYS 42 n 42 LYS 42 A LYS 43 n 43 LYS 43 A LEU 44 n 44 LEU 44 A THR 45 n 45 THR 45 A PRO 46 n 46 PRO 46 A LYS 47 n 47 LYS 47 A ARG 48 n 48 ARG 48 A ARG 49 n 49 ARG 49 A GLU 50 n 50 GLU 50 A LYS 51 n 51 LYS 51 A LEU 52 n 52 LEU 52 A PHE 53 n 53 PHE 53 A ASN 54 n 54 ASN 54 A GLU 55 n 55 GLU 55 A ILE 56 n 56 ILE 56 A LEU 57 n 57 LEU 57 A GLY 58 n 58 GLY 58 A VAL 59 n 59 VAL 59 A LEU 60 n 60 LEU 60 A ASP 61 n 61 ASP 61 A ASP 62 n 62 ASP 62 A TYR 63 n 63 TYR 63 A VAL 64 n 64 VAL 64 A ILE 65 n 65 ILE 65 A LEU 66 n 66 LEU 66 A GLU 67 n 67 GLU 67 A LEU 68 n 68 LEU 68 A PRO 69 n 69 PRO 69 A PRO 70 n 70 PRO 70 A ASP 71 n 71 ASP 71 A VAL 72 n 72 VAL 72 A ILE 73 n 73 ILE 73 A GLY 74 n 74 GLY 74 A SER 75 n 75 SER 75 A ARG 76 n 76 ARG 76 A GLU 77 n 77 GLU 77 A GLY 78 n 78 GLY 78 A THR 79 n 79 THR 79 A LEU 80 n 80 LEU 80 A ASN 81 n 81 ASN 81 A GLU 82 n 82 GLU 82 A PHE 83 n 83 PHE 83 A GLU 84 n 84 GLU 84 A VAL 85 n 85 VAL 85 A GLU 86 n 86 GLU 86 A ASN 87 n 87 ASN 87 A PHE 88 n 88 PHE 88 A ALA 89 n 89 ALA 89 A LYS 90 n 90 LYS 90 A ALA 91 n 91 ALA 91 A LEU 92 n 92 LEU 92 A ASN 93 n 93 ASN 93 A SER 94 n 94 SER 94 A LEU 95 n 95 LEU 95 A LYS 96 n 96 LYS 96 A VAL 97 n 97 VAL 97 A LYS 98 n 98 LYS 98 A PRO 99 n 99 PRO 99 A ASP 100 n 100 ASP 100 A VAL 101 n 101 VAL 101 A ILE 102 n 102 ILE 102 A TYR 103 n 103 TYR 103 A ALA 104 n 104 ALA 104 A ASP 105 n 105 ASP 105 A ALA 106 n 106 ALA 106 A ALA 107 n 107 ALA 107 A ASP 108 n 108 ASP 108 A VAL 109 n 109 VAL 109 A ASP 110 n 110 ASP 110 A GLU 111 n 111 GLU 111 A GLU 112 n 112 GLU 112 A ARG 113 n 113 ARG 113 A PHE 114 n 114 PHE 114 A ALA 115 n 115 ALA 115 A ARG 116 n 116 ARG 116 A GLU 117 n 117 GLU 117 A LEU 118 n 118 LEU 118 A GLY 119 n 119 GLY 119 A GLU 120 n 120 GLU 120 A ARG 121 n 121 ARG 121 A LEU 122 n 122 LEU 122 A ASN 123 n 123 ASN 123 A PHE 124 n 124 PHE 124 A GLU 125 n 125 GLU 125 A ALA 126 n 126 ALA 126 A GLU 127 n 127 GLU 127 A VAL 128 n 128 VAL 128 A VAL 129 n 129 VAL 129 A ALA 130 n 130 ALA 130 A LYS 131 n 131 LYS 131 A HIS 132 n 132 HIS 132 A LYS 133 n 133 LYS 133 A ALA 134 n 134 ALA 134 A ASP 135 n 135 ASP 135 A ASP 136 n 136 ASP 136 A ILE 137 n 137 ILE 137 A PHE 138 n 138 PHE 138 A PRO 139 n 139 PRO 139 A VAL 140 n 140 VAL 140 A VAL 141 n 141 VAL 141 A SER 142 n 142 SER 142 A ALA 143 n 143 ALA 143 A ALA 144 n 144 ALA 144 A SER 145 n 145 SER 145 A ILE 146 n 146 ILE 146 A LEU 147 n 147 LEU 147 A ALA 148 n 148 ALA 148 A LYS 149 n 149 LYS 149 A VAL 150 n 150 VAL 150 A THR 151 n 151 THR 151 A ARG 152 n 152 ARG 152 A ASP 153 n 153 ASP 153 A ARG 154 n 154 ARG 154 A ALA 155 n 155 ALA 155 A VAL 156 n 156 VAL 156 A GLU 157 n 157 GLU 157 A LYS 158 n 158 LYS 158 A LEU 159 n 159 LEU 159 A LYS 160 n 160 LYS 160 A GLU 161 n 161 GLU 161 A GLU 162 n 162 GLU 162 A TYR 163 n 163 TYR 163 A GLY 164 n 164 GLY 164 A GLU 165 n 165 GLU 165 A ILE 166 n 166 ILE 166 A GLY 167 n 167 GLY 167 A SER 168 n 168 SER 168 A GLY 169 n 169 GLY 169 A TYR 170 n 170 TYR 170 A PRO 171 n 171 PRO 171 A SER 172 n 172 SER 172 A ASP 173 n 173 ASP 173 A PRO 174 n 174 PRO 174 A ARG 175 n 175 ARG 175 A THR 176 n 176 THR 176 A ARG 177 n 177 ARG 177 A ALA 178 n 178 ALA 178 A PHE 179 n 179 PHE 179 A LEU 180 n 180 LEU 180 A GLU 181 n 181 GLU 181 A ASN 182 n 182 ASN 182 A TYR 183 n 183 TYR 183 A TYR 184 n 184 TYR 184 A ARG 185 n 185 ARG 185 A GLU 186 n 186 GLU 186 A HIS 187 n 187 HIS 187 A GLY 188 n 188 GLY 188 A GLU 189 n 189 GLU 189 A PHE 190 n 190 PHE 190 A PRO 191 n 191 PRO 191 A PRO 192 n 192 PRO 192 A ILE 193 n 193 ILE 193 A VAL 194 n 194 VAL 194 A ARG 195 n 195 ARG 195 A LYS 196 n 196 LYS 196 A GLY 197 n 197 GLY 197 A TRP 198 n 198 TRP 198 A LYS 199 n 199 LYS 199 A THR 200 n 200 THR 200 A LEU 201 n 201 LEU 201 A LYS 202 n 202 LYS 202 A LYS 203 n 203 LYS 203 A ILE 204 n 204 ILE 204 A ALA 205 n 205 ALA 205 A GLU 206 n 206 GLU 206 A LYS 207 n 207 LYS 207 A VAL 208 n 208 VAL 208 A GLU 209 n 209 GLU 209 A SER 210 n 210 SER 210 A GLU 211 n 211 GLU 211 A LYS 212 n 212 LYS 212 A LYS 213 n 213 LYS 213 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 68 A N LEU 68 A O MET 18 A O MET 18 A O VAL 25 A O VAL 25 A N ILE 3 A N ILE 3 A N ALA 4 A N ALA 4 A O VAL 101 A O VAL 101 A N ILE 102 A N ILE 102 A O GLU 127 A O GLU 127 1 A CG GLU 34 A CG GLU 34 1 Y 1 A CD GLU 34 A CD GLU 34 1 Y 1 A OE1 GLU 34 A OE1 GLU 34 1 Y 1 A OE2 GLU 34 A OE2 GLU 34 1 Y 1 A CG LYS 37 A CG LYS 37 1 Y 1 A CD LYS 37 A CD LYS 37 1 Y 1 A CE LYS 37 A CE LYS 37 1 Y 1 A NZ LYS 37 A NZ LYS 37 1 Y 1 A CG ARG 39 A CG ARG 39 1 Y 1 A CD ARG 39 A CD ARG 39 1 Y 1 A NE ARG 39 A NE ARG 39 1 Y 1 A CZ ARG 39 A CZ ARG 39 1 Y 1 A NH1 ARG 39 A NH1 ARG 39 1 Y 1 A NH2 ARG 39 A NH2 ARG 39 1 Y 1 A CG ASP 40 A CG ASP 40 1 Y 1 A OD1 ASP 40 A OD1 ASP 40 1 Y 1 A OD2 ASP 40 A OD2 ASP 40 1 Y 1 A CG LYS 43 A CG LYS 43 1 Y 1 A CD LYS 43 A CD LYS 43 1 Y 1 A CE LYS 43 A CE LYS 43 1 Y 1 A NZ LYS 43 A NZ LYS 43 1 Y 1 A CG LYS 158 A CG LYS 158 1 Y 1 A CD LYS 158 A CD LYS 158 1 Y 1 A CE LYS 158 A CE LYS 158 1 Y 1 A NZ LYS 158 A NZ LYS 158 1 Y 1 A CG LYS 196 A CG LYS 196 1 Y 1 A CD LYS 196 A CD LYS 196 1 Y 1 A CE LYS 196 A CE LYS 196 1 Y 1 A NZ LYS 196 A NZ LYS 196 1 Y 1 A CG LYS 202 A CG LYS 202 1 Y 1 A CD LYS 202 A CD LYS 202 1 Y 1 A CE LYS 202 A CE LYS 202 1 Y 1 A NZ LYS 202 A NZ LYS 202 1 Y 1 A CG LYS 213 A CG LYS 213 1 Y 1 A CD LYS 213 A CD LYS 213 1 Y 1 A CE LYS 213 A CE LYS 213 1 Y 1 A NZ LYS 213 A NZ LYS 213 1 Y 1 A ASP 40 -106.19 51.86 1 A PRO 192 -76.88 43.50 1 A LYS 196 -38.18 -33.47 1 A LYS 212 -22.76 129.66 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP 22.80 0.150 0.0 0.0 -0.1396 0.0 1.246 0.2740000 0.2230000 0.2230000 2.00 15.00 1011 15068 14723 5.8 84.5 RANDOM 10000 1 ISOTROPIC THROUGHOUT 2.000 MIR ENGH & HUBER FLAT MODEL 66.4 0.435 0.34 0.26 5.00 0.21 0.13 2.00 15.00 216 1868 0 0 1652 0.005 1.16 21.9 0.697 0.320 1.5 0.597 2.0 0.297 2.0 0.502 2.5 0.2750000 0.2180000 2.03 46 546 5.3 68.4 17.30 2.000 50.000 1IO2 52662 15205 0.0 0.000 0.0540000 1 17.8000 86.6 0.2540000 2.00 2.07 4.600 1 73.7 phasing MLPHARE refinement CNS data reduction DENZO data scaling SCALEPACK Crystal structure of type 2 ribonuclease h from hyperthermophilic archaeon, thermococcus kodakaraensis kod1 1 N N 2 N N A SER 29 A SER 29 HELX_P A LEU 36 A LEU 36 1 1 8 A LYS 37 A LYS 37 HELX_P A SER 41 A SER 41 5 2 5 A THR 45 A THR 45 HELX_P A GLY 58 A GLY 58 1 3 14 A PRO 69 A PRO 69 HELX_P A SER 75 A SER 75 1 4 7 A THR 79 A THR 79 HELX_P A LEU 95 A LEU 95 1 5 17 A ASP 110 A ASP 110 HELX_P A ARG 121 A ARG 121 1 6 12 A LYS 133 A LYS 133 HELX_P A PHE 138 A PHE 138 1 7 6 A PHE 138 A PHE 138 HELX_P A GLY 164 A GLY 164 1 8 27 A ASP 173 A ASP 173 HELX_P A GLY 188 A GLY 188 1 9 16 A TRP 198 A TRP 198 HELX_P A LYS 212 A LYS 212 1 10 15 HYDROLASE endonuclease, HYDROLASE RNH2_PYRKO UNP 1 O74035 1 213 1IO2 1 213 O74035 A 1 1 213 5 anti-parallel anti-parallel parallel parallel A ASP 62 A ASP 62 A LEU 68 A LEU 68 A MET 18 A MET 18 A ASP 26 A ASP 26 A LYS 2 A LYS 2 A ALA 9 A ALA 9 A VAL 101 A VAL 101 A ASP 105 A ASP 105 A GLU 127 A GLU 127 A LYS 131 A LYS 131 19 P 21 21 21