0.010987
0.006343
0.000000
0.000000
0.012686
0.000000
0.000000
0.000000
0.021891
0.00000
0.00000
0.00000
Igarashi, N.
Neya, S.
Funasaki, N.
Tanaka, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
91.020
91.020
45.680
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C N -1
26.017
CYANIDE ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C28 H24 Fe N4 O4
536.360
6,7-DICARBOXYL-1,2,3,4,5,8-HEXAMETHYLHEMIN
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
N
N
76
N
N
N
77
S
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
C
N
83
N
O
N
84
N
N
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
O
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
FE
N
126
R
N
N
127
N
N
Y
128
N
N
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
C
N
133
N
C
N
134
N
C
N
135
N
C
Y
136
N
C
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
C
Y
141
N
C
N
142
N
C
N
143
N
C
N
144
N
C
N
145
N
C
N
146
N
O
N
147
N
O
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
C
Y
152
N
C
N
153
N
C
Y
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
S
N
354
N
O
N
355
N
O
N
356
N
O
N
357
N
O
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
R
C
N
363
N
O
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
N
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
N
413
N
O
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
N
431
N
C
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
trip
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
Y
125
N
sing
Y
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
Y
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
Y
148
N
doub
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
Y
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
Y
196
N
sing
Y
197
N
doub
Y
198
N
doub
N
199
N
sing
Y
200
N
sing
N
201
N
sing
Y
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
Y
405
N
doub
Y
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
37
5487
5493
10.1021/bi972632c
9548931
Structure and function of 6,7-dicarboxyheme-substituted myoglobin
1998
10.2210/pdb1iop/pdb
pdb_00001iop
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
297
1
IMAGE PLATE
1995-04-05
RIGAKU RAXIS IIC
DOUBLE CRYSTAL SI(111)
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH3R
CYANOMET MYOGLOBIN SUBSTITUTED WITH 6,7-DICARBOXYLHEMIN
17234.951
MYOGLOBIN
1
nat
polymer
26.017
CYANIDE ION
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
536.360
6,7-DICARBOXYL-1,2,3,4,5,8-HEXAMETHYLHEMIN
1
syn
non-polymer
18.015
water
136
nat
water
no
no
VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG
HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG
HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sperm whale
Physeter
sample
9755
Physeter catodon
2
3.08
60.
7.0
pH 7.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_validate_chiral
struct_conn
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
1998-04-08
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-07
1
4
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-12-12
REL
CYN
CYANIDE ION
SO4
SULFATE ION
HE6
6,7-DICARBOXYL-1,2,3,4,5,8-HEXAMETHYLHEMIN
HOH
water
SPERM WHALE MYOGLOBIN
Other
experimental model
CYN
155
2
CYN
CYN
155
A
SO4
300
3
SO4
SO4
300
A
HE6
154
4
HE6
HE6
154
A
HOH
156
5
HOH
HOH
156
A
HOH
157
5
HOH
HOH
157
A
HOH
158
5
HOH
HOH
158
A
HOH
159
5
HOH
HOH
159
A
HOH
160
5
HOH
HOH
160
A
HOH
161
5
HOH
HOH
161
A
HOH
162
5
HOH
HOH
162
A
HOH
163
5
HOH
HOH
163
A
HOH
164
5
HOH
HOH
164
A
HOH
165
5
HOH
HOH
165
A
HOH
166
5
HOH
HOH
166
A
HOH
167
5
HOH
HOH
167
A
HOH
168
5
HOH
HOH
168
A
HOH
169
5
HOH
HOH
169
A
HOH
170
5
HOH
HOH
170
A
HOH
171
5
HOH
HOH
171
A
HOH
172
5
HOH
HOH
172
A
HOH
173
5
HOH
HOH
173
A
HOH
174
5
HOH
HOH
174
A
HOH
175
5
HOH
HOH
175
A
HOH
176
5
HOH
HOH
176
A
HOH
177
5
HOH
HOH
177
A
HOH
178
5
HOH
HOH
178
A
HOH
179
5
HOH
HOH
179
A
HOH
180
5
HOH
HOH
180
A
HOH
181
5
HOH
HOH
181
A
HOH
182
5
HOH
HOH
182
A
HOH
183
5
HOH
HOH
183
A
HOH
184
5
HOH
HOH
184
A
HOH
185
5
HOH
HOH
185
A
HOH
186
5
HOH
HOH
186
A
HOH
187
5
HOH
HOH
187
A
HOH
188
5
HOH
HOH
188
A
HOH
189
5
HOH
HOH
189
A
HOH
190
5
HOH
HOH
190
A
HOH
191
5
HOH
HOH
191
A
HOH
192
5
HOH
HOH
192
A
HOH
193
5
HOH
HOH
193
A
HOH
194
5
HOH
HOH
194
A
HOH
195
5
HOH
HOH
195
A
HOH
196
5
HOH
HOH
196
A
HOH
197
5
HOH
HOH
197
A
HOH
198
5
HOH
HOH
198
A
HOH
199
5
HOH
HOH
199
A
HOH
200
5
HOH
HOH
200
A
HOH
201
5
HOH
HOH
201
A
HOH
202
5
HOH
HOH
202
A
HOH
203
5
HOH
HOH
203
A
HOH
204
5
HOH
HOH
204
A
HOH
205
5
HOH
HOH
205
A
HOH
206
5
HOH
HOH
206
A
HOH
207
5
HOH
HOH
207
A
HOH
208
5
HOH
HOH
208
A
HOH
209
5
HOH
HOH
209
A
HOH
210
5
HOH
HOH
210
A
HOH
211
5
HOH
HOH
211
A
HOH
212
5
HOH
HOH
212
A
HOH
213
5
HOH
HOH
213
A
HOH
214
5
HOH
HOH
214
A
HOH
215
5
HOH
HOH
215
A
HOH
216
5
HOH
HOH
216
A
HOH
217
5
HOH
HOH
217
A
HOH
218
5
HOH
HOH
218
A
HOH
219
5
HOH
HOH
219
A
HOH
220
5
HOH
HOH
220
A
HOH
221
5
HOH
HOH
221
A
HOH
222
5
HOH
HOH
222
A
HOH
223
5
HOH
HOH
223
A
HOH
224
5
HOH
HOH
224
A
HOH
225
5
HOH
HOH
225
A
HOH
226
5
HOH
HOH
226
A
HOH
227
5
HOH
HOH
227
A
HOH
228
5
HOH
HOH
228
A
HOH
229
5
HOH
HOH
229
A
HOH
230
5
HOH
HOH
230
A
HOH
231
5
HOH
HOH
231
A
HOH
232
5
HOH
HOH
232
A
HOH
233
5
HOH
HOH
233
A
HOH
234
5
HOH
HOH
234
A
HOH
235
5
HOH
HOH
235
A
HOH
236
5
HOH
HOH
236
A
HOH
237
5
HOH
HOH
237
A
HOH
238
5
HOH
HOH
238
A
HOH
239
5
HOH
HOH
239
A
HOH
240
5
HOH
HOH
240
A
HOH
241
5
HOH
HOH
241
A
HOH
242
5
HOH
HOH
242
A
HOH
243
5
HOH
HOH
243
A
HOH
244
5
HOH
HOH
244
A
HOH
245
5
HOH
HOH
245
A
HOH
246
5
HOH
HOH
246
A
HOH
247
5
HOH
HOH
247
A
HOH
248
5
HOH
HOH
248
A
HOH
249
5
HOH
HOH
249
A
HOH
250
5
HOH
HOH
250
A
HOH
251
5
HOH
HOH
251
A
HOH
252
5
HOH
HOH
252
A
HOH
253
5
HOH
HOH
253
A
HOH
254
5
HOH
HOH
254
A
HOH
255
5
HOH
HOH
255
A
HOH
256
5
HOH
HOH
256
A
HOH
257
5
HOH
HOH
257
A
HOH
258
5
HOH
HOH
258
A
HOH
259
5
HOH
HOH
259
A
HOH
260
5
HOH
HOH
260
A
HOH
261
5
HOH
HOH
261
A
HOH
262
5
HOH
HOH
262
A
HOH
263
5
HOH
HOH
263
A
HOH
264
5
HOH
HOH
264
A
HOH
265
5
HOH
HOH
265
A
HOH
266
5
HOH
HOH
266
A
HOH
267
5
HOH
HOH
267
A
HOH
268
5
HOH
HOH
268
A
HOH
269
5
HOH
HOH
269
A
HOH
270
5
HOH
HOH
270
A
HOH
271
5
HOH
HOH
271
A
HOH
272
5
HOH
HOH
272
A
HOH
273
5
HOH
HOH
273
A
HOH
274
5
HOH
HOH
274
A
HOH
275
5
HOH
HOH
275
A
HOH
276
5
HOH
HOH
276
A
HOH
277
5
HOH
HOH
277
A
HOH
278
5
HOH
HOH
278
A
HOH
279
5
HOH
HOH
279
A
HOH
280
5
HOH
HOH
280
A
HOH
281
5
HOH
HOH
281
A
HOH
282
5
HOH
HOH
282
A
HOH
283
5
HOH
HOH
283
A
HOH
284
5
HOH
HOH
284
A
HOH
285
5
HOH
HOH
285
A
HOH
286
5
HOH
HOH
286
A
HOH
287
5
HOH
HOH
287
A
HOH
288
5
HOH
HOH
288
A
HOH
289
5
HOH
HOH
289
A
HOH
290
5
HOH
HOH
290
A
HOH
291
5
HOH
HOH
291
A
VAL
1
n
1
VAL
1
A
LEU
2
n
2
LEU
2
A
SER
3
n
3
SER
3
A
GLU
4
n
4
GLU
4
A
GLY
5
n
5
GLY
5
A
GLU
6
n
6
GLU
6
A
TRP
7
n
7
TRP
7
A
GLN
8
n
8
GLN
8
A
LEU
9
n
9
LEU
9
A
VAL
10
n
10
VAL
10
A
LEU
11
n
11
LEU
11
A
HIS
12
n
12
HIS
12
A
VAL
13
n
13
VAL
13
A
TRP
14
n
14
TRP
14
A
ALA
15
n
15
ALA
15
A
LYS
16
n
16
LYS
16
A
VAL
17
n
17
VAL
17
A
GLU
18
n
18
GLU
18
A
ALA
19
n
19
ALA
19
A
ASP
20
n
20
ASP
20
A
VAL
21
n
21
VAL
21
A
ALA
22
n
22
ALA
22
A
GLY
23
n
23
GLY
23
A
HIS
24
n
24
HIS
24
A
GLY
25
n
25
GLY
25
A
GLN
26
n
26
GLN
26
A
ASP
27
n
27
ASP
27
A
ILE
28
n
28
ILE
28
A
LEU
29
n
29
LEU
29
A
ILE
30
n
30
ILE
30
A
ARG
31
n
31
ARG
31
A
LEU
32
n
32
LEU
32
A
PHE
33
n
33
PHE
33
A
LYS
34
n
34
LYS
34
A
SER
35
n
35
SER
35
A
HIS
36
n
36
HIS
36
A
PRO
37
n
37
PRO
37
A
GLU
38
n
38
GLU
38
A
THR
39
n
39
THR
39
A
LEU
40
n
40
LEU
40
A
GLU
41
n
41
GLU
41
A
LYS
42
n
42
LYS
42
A
PHE
43
n
43
PHE
43
A
ASP
44
n
44
ASP
44
A
ARG
45
n
45
ARG
45
A
PHE
46
n
46
PHE
46
A
LYS
47
n
47
LYS
47
A
HIS
48
n
48
HIS
48
A
LEU
49
n
49
LEU
49
A
LYS
50
n
50
LYS
50
A
THR
51
n
51
THR
51
A
GLU
52
n
52
GLU
52
A
ALA
53
n
53
ALA
53
A
GLU
54
n
54
GLU
54
A
MET
55
n
55
MET
55
A
LYS
56
n
56
LYS
56
A
ALA
57
n
57
ALA
57
A
SER
58
n
58
SER
58
A
GLU
59
n
59
GLU
59
A
ASP
60
n
60
ASP
60
A
LEU
61
n
61
LEU
61
A
LYS
62
n
62
LYS
62
A
LYS
63
n
63
LYS
63
A
HIS
64
n
64
HIS
64
A
GLY
65
n
65
GLY
65
A
VAL
66
n
66
VAL
66
A
THR
67
n
67
THR
67
A
VAL
68
n
68
VAL
68
A
LEU
69
n
69
LEU
69
A
THR
70
n
70
THR
70
A
ALA
71
n
71
ALA
71
A
LEU
72
n
72
LEU
72
A
GLY
73
n
73
GLY
73
A
ALA
74
n
74
ALA
74
A
ILE
75
n
75
ILE
75
A
LEU
76
n
76
LEU
76
A
LYS
77
n
77
LYS
77
A
LYS
78
n
78
LYS
78
A
LYS
79
n
79
LYS
79
A
GLY
80
n
80
GLY
80
A
HIS
81
n
81
HIS
81
A
HIS
82
n
82
HIS
82
A
GLU
83
n
83
GLU
83
A
ALA
84
n
84
ALA
84
A
GLU
85
n
85
GLU
85
A
LEU
86
n
86
LEU
86
A
LYS
87
n
87
LYS
87
A
PRO
88
n
88
PRO
88
A
LEU
89
n
89
LEU
89
A
ALA
90
n
90
ALA
90
A
GLN
91
n
91
GLN
91
A
SER
92
n
92
SER
92
A
HIS
93
n
93
HIS
93
A
ALA
94
n
94
ALA
94
A
THR
95
n
95
THR
95
A
LYS
96
n
96
LYS
96
A
HIS
97
n
97
HIS
97
A
LYS
98
n
98
LYS
98
A
ILE
99
n
99
ILE
99
A
PRO
100
n
100
PRO
100
A
ILE
101
n
101
ILE
101
A
LYS
102
n
102
LYS
102
A
TYR
103
n
103
TYR
103
A
LEU
104
n
104
LEU
104
A
GLU
105
n
105
GLU
105
A
PHE
106
n
106
PHE
106
A
ILE
107
n
107
ILE
107
A
SER
108
n
108
SER
108
A
GLU
109
n
109
GLU
109
A
ALA
110
n
110
ALA
110
A
ILE
111
n
111
ILE
111
A
ILE
112
n
112
ILE
112
A
HIS
113
n
113
HIS
113
A
VAL
114
n
114
VAL
114
A
LEU
115
n
115
LEU
115
A
HIS
116
n
116
HIS
116
A
SER
117
n
117
SER
117
A
ARG
118
n
118
ARG
118
A
HIS
119
n
119
HIS
119
A
PRO
120
n
120
PRO
120
A
GLY
121
n
121
GLY
121
A
ASP
122
n
122
ASP
122
A
PHE
123
n
123
PHE
123
A
GLY
124
n
124
GLY
124
A
ALA
125
n
125
ALA
125
A
ASP
126
n
126
ASP
126
A
ALA
127
n
127
ALA
127
A
GLN
128
n
128
GLN
128
A
GLY
129
n
129
GLY
129
A
ALA
130
n
130
ALA
130
A
MET
131
n
131
MET
131
A
ASN
132
n
132
ASN
132
A
LYS
133
n
133
LYS
133
A
ALA
134
n
134
ALA
134
A
LEU
135
n
135
LEU
135
A
GLU
136
n
136
GLU
136
A
LEU
137
n
137
LEU
137
A
PHE
138
n
138
PHE
138
A
ARG
139
n
139
ARG
139
A
LYS
140
n
140
LYS
140
A
ASP
141
n
141
ASP
141
A
ILE
142
n
142
ILE
142
A
ALA
143
n
143
ALA
143
A
ALA
144
n
144
ALA
144
A
LYS
145
n
145
LYS
145
A
TYR
146
n
146
TYR
146
A
LYS
147
n
147
LYS
147
A
GLU
148
n
148
GLU
148
A
LEU
149
n
149
LEU
149
A
GLY
150
n
150
GLY
150
A
TYR
151
n
151
TYR
151
A
GLN
152
n
152
GLN
152
A
GLY
153
n
153
GLY
153
A
author_defined_assembly
1
monomeric
A
HIS
93
A
NE2
HIS
93
1_555
A
HE6
154
D
FE
HE6
1_555
A
HE6
154
D
NA
HE6
1_555
91.5
A
HIS
93
A
NE2
HIS
93
1_555
A
HE6
154
D
FE
HE6
1_555
A
HE6
154
D
NB
HE6
1_555
91.8
A
HE6
154
D
NA
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
HE6
154
D
NB
HE6
1_555
88.4
A
HIS
93
A
NE2
HIS
93
1_555
A
HE6
154
D
FE
HE6
1_555
A
HE6
154
D
NC
HE6
1_555
91.9
A
HE6
154
D
NA
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
HE6
154
D
NC
HE6
1_555
176.6
A
HE6
154
D
NB
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
HE6
154
D
NC
HE6
1_555
92.1
A
HIS
93
A
NE2
HIS
93
1_555
A
HE6
154
D
FE
HE6
1_555
A
HE6
154
D
ND
HE6
1_555
91.8
A
HE6
154
D
NA
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
HE6
154
D
ND
HE6
1_555
91.3
A
HE6
154
D
NB
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
HE6
154
D
ND
HE6
1_555
176.4
A
HE6
154
D
NC
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
HE6
154
D
ND
HE6
1_555
88.0
A
HIS
93
A
NE2
HIS
93
1_555
A
HE6
154
D
FE
HE6
1_555
A
CYN
155
B
C
CYN
1_555
175.8
A
HE6
154
D
NA
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
CYN
155
B
C
CYN
1_555
87.8
A
HE6
154
D
NB
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
CYN
155
B
C
CYN
1_555
92.3
A
HE6
154
D
NC
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
CYN
155
B
C
CYN
1_555
88.8
A
HE6
154
D
ND
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
CYN
155
B
C
CYN
1_555
84.1
A
HIS
93
A
NE2
HIS
93
1_555
A
HE6
154
D
FE
HE6
1_555
A
CYN
155
B
N
CYN
1_555
172.6
A
HE6
154
D
NA
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
CYN
155
B
N
CYN
1_555
93.8
A
HE6
154
D
NB
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
CYN
155
B
N
CYN
1_555
93.4
A
HE6
154
D
NC
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
CYN
155
B
N
CYN
1_555
82.8
A
HE6
154
D
ND
HE6
1_555
A
HE6
154
D
FE
HE6
1_555
A
CYN
155
B
N
CYN
1_555
83.0
A
CYN
155
B
C
CYN
1_555
A
HE6
154
D
FE
HE6
1_555
A
CYN
155
B
N
CYN
1_555
6.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
NA
HE6
154
PLANAR
1
A
ASP
20
-158.57
73.67
1
A
PHE
123
-108.87
63.62
1
A
GLN
152
91.61
-78.73
PARHCSDX.PRO
TOPHCSDX.PRO
PARAM.HEME
TOPH.HEME
PARAM19.SOL
TOPH19.SOL
SO4.PARAM
SO4.TOP
24.25
PARAMETER AND TOPOLOGY FILES FOR HEME AND SULFATE ION WERE MODIFIED.
1.9
10.0
16116
94.4
1
2.
MOLECULAR REPLACEMENT
SPERM WHALE MYOGLOBIN
1.9
10.0
136
1397
44
0
1217
0.007
1.645
0.2970000
1.99
1897
8
89.7
1.9
80.
1IOP
17073
1.
0.0670000
1
8.0
10.8
96.3
0.1450000
1.90
1.99
94.4
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
data reduction
PROCESS
data scaling
PROCESS
phasing
X-PLOR
3.1
INCORPORATION OF A HEMIN WITH THE SHORTEST ACID SIDE-CHAINS INTO MYOGLOBIN
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
SER
3
A
SER
3
HELX_P
A
GLU
18
A
GLU
18
1
A
16
A
ASP
20
A
ASP
20
HELX_P
A
SER
35
A
SER
35
1
B
16
A
HIS
36
A
HIS
36
HELX_P
A
LYS
42
A
LYS
42
1
C
7
A
THR
51
A
THR
51
HELX_P
A
ALA
57
A
ALA
57
1
D
7
A
SER
58
A
SER
58
HELX_P
A
LYS
77
A
LYS
77
1
E
20
A
LEU
86
A
LEU
86
HELX_P
A
THR
95
A
THR
95
1
F
10
A
PRO
100
A
PRO
100
HELX_P
A
ARG
118
A
ARG
118
1
G
19
A
GLY
124
A
GLY
124
HELX_P
A
LEU
149
A
LEU
149
1
H
26
metalc
2.019
A
HIS
93
A
NE2
HIS
93
1_555
A
HE6
154
D
FE
HE6
1_555
metalc
1.886
A
HE6
154
D
FE
HE6
1_555
A
CYN
155
B
C
CYN
1_555
metalc
3.110
A
HE6
154
D
FE
HE6
1_555
A
CYN
155
B
N
CYN
1_555
OXYGEN TRANSPORT
OXYGEN TRANSPORT, GLOBIN FOLD
MYG_PHYCA
UNP
1
1
P02185
VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG
HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG
1
153
1IOP
1
153
P02185
A
1
1
153
BINDING SITE FOR RESIDUE CYN A 155
A
CYN
155
Software
4
BINDING SITE FOR RESIDUE SO4 A 300
A
SO4
300
Software
6
BINDING SITE FOR RESIDUE HE6 A 154
A
HE6
154
Software
11
A
PHE
43
A
PHE
43
4
1_555
A
HIS
64
A
HIS
64
4
1_555
A
VAL
68
A
VAL
68
4
1_555
A
HE6
154
D
HE6
4
1_555
A
SER
3
A
SER
3
6
1_554
A
GLU
4
A
GLU
4
6
1_554
A
LYS
34
A
LYS
34
6
1_555
A
THR
51
A
THR
51
6
1_555
A
GLU
52
A
GLU
52
6
1_555
A
HOH
214
E
HOH
6
1_555
A
LYS
42
A
LYS
42
11
1_555
A
PHE
43
A
PHE
43
11
1_555
A
ARG
45
A
ARG
45
11
1_555
A
HIS
64
A
HIS
64
11
1_555
A
LEU
89
A
LEU
89
11
1_555
A
HIS
93
A
HIS
93
11
1_555
A
HIS
97
A
HIS
97
11
1_555
A
TYR
103
A
TYR
103
11
1_555
A
LEU
104
A
LEU
104
11
1_555
A
CYN
155
B
CYN
11
1_555
A
HOH
290
E
HOH
11
1_555
168
P 6