0.012100
0.006986
0.000000
0.000000
0.013972
0.000000
0.000000
0.000000
0.009728
0.00000
0.00000
0.00000
Kigawa, T.
Yamaguchi-Nunokawa, E.
Kodama, K.
Matsuda, T.
Yabuki, T.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
82.645
82.645
102.794
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H15 N5 O11 P2
443.201
n
GUANOSINE-5'-DIPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
P
N
89
N
O
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
P
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
C
N
98
R
C
N
99
N
O
N
100
S
C
N
101
N
O
N
102
R
C
N
103
N
O
N
104
R
C
Y
105
N
N
Y
106
N
C
Y
107
N
N
Y
108
N
C
N
109
N
C
N
110
N
O
N
111
N
N
N
112
N
C
N
113
N
N
N
114
N
N
Y
115
N
C
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
S
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
O
N
159
N
O
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
Y
185
N
C
Y
186
N
N
Y
187
N
C
Y
188
N
C
Y
189
N
N
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
S
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
S
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
R
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
N
375
N
O
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
Y
112
N
sing
Y
113
N
sing
Y
114
N
doub
N
115
N
sing
Y
116
N
sing
N
117
N
sing
Y
118
N
doub
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
Y
185
N
sing
Y
186
N
doub
Y
187
N
doub
N
188
N
sing
Y
189
N
sing
N
190
N
sing
Y
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
Y
293
N
doub
Y
294
N
sing
Y
295
N
sing
N
296
N
sing
Y
297
N
doub
N
298
N
sing
Y
299
N
doub
N
300
N
sing
Y
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
NE
J.STRUCT.FUNCT.GENOM.
1345-711X
2
29
35
10.1023/A:1013203532303
12836672
Selenomethionine incorporation into a protein by cell-free synthesis
2001
10.2210/pdb1ioz/pdb
pdb_00001ioz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
CCD
2000-05-22
MARRESEARCH
MAD
M
x-ray
1
0.97925
1.0
0.97882
1.0
0.97115
1.0
0.98660
1.0
BL44B2
SPring-8
0.97925,0.97882,0.97115,0.98660
SYNCHROTRON
SPRING-8 BEAMLINE BL44B2
19517.062
TRANSFORMING PROTEIN P21/H-RAS-1
RESIDUES 1-171
1
man
polymer
443.201
GUANOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
18.015
water
180
nat
water
C-H-RAS
no
no
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC
VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV
REIRQHKLRKL
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC
VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV
REIRQHKLRKL
A
trt001000212.2
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
CELL-FREE PROTEIN SYNTHESIS SYSTEM
9606
Homo sapiens
PLASMID
PK7-RAS
1
2.60
52.62
VAPOR DIFFUSION, HANGING DROP
6.5
calcium acetate, sodium cacodylate, PEG8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
RIKEN Structural Genomics/Proteomics Initiative
RSGI
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-10-03
1
1
2007-10-21
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
PDBJ
2001-04-18
REL
GDP
GUANOSINE-5'-DIPHOSPHATE
HOH
water
GDP
1180
2
GDP
GDP
1180
A
HOH
1
3
HOH
HOH
1181
A
HOH
2
3
HOH
HOH
1182
A
HOH
3
3
HOH
HOH
1183
A
HOH
4
3
HOH
HOH
1184
A
HOH
5
3
HOH
HOH
1185
A
HOH
6
3
HOH
HOH
1186
A
HOH
7
3
HOH
HOH
1187
A
HOH
8
3
HOH
HOH
1188
A
HOH
9
3
HOH
HOH
1189
A
HOH
10
3
HOH
HOH
1190
A
HOH
11
3
HOH
HOH
1191
A
HOH
12
3
HOH
HOH
1192
A
HOH
13
3
HOH
HOH
1193
A
HOH
14
3
HOH
HOH
1194
A
HOH
15
3
HOH
HOH
1195
A
HOH
16
3
HOH
HOH
1196
A
HOH
17
3
HOH
HOH
1197
A
HOH
18
3
HOH
HOH
1198
A
HOH
19
3
HOH
HOH
1199
A
HOH
20
3
HOH
HOH
1200
A
HOH
21
3
HOH
HOH
1201
A
HOH
22
3
HOH
HOH
1202
A
HOH
23
3
HOH
HOH
1203
A
HOH
24
3
HOH
HOH
1204
A
HOH
25
3
HOH
HOH
1205
A
HOH
26
3
HOH
HOH
1206
A
HOH
27
3
HOH
HOH
1207
A
HOH
28
3
HOH
HOH
1208
A
HOH
29
3
HOH
HOH
1209
A
HOH
30
3
HOH
HOH
1210
A
HOH
31
3
HOH
HOH
1211
A
HOH
32
3
HOH
HOH
1212
A
HOH
33
3
HOH
HOH
1213
A
HOH
34
3
HOH
HOH
1214
A
HOH
35
3
HOH
HOH
1215
A
HOH
36
3
HOH
HOH
1216
A
HOH
37
3
HOH
HOH
1217
A
HOH
38
3
HOH
HOH
1218
A
HOH
39
3
HOH
HOH
1219
A
HOH
40
3
HOH
HOH
1220
A
HOH
41
3
HOH
HOH
1221
A
HOH
42
3
HOH
HOH
1222
A
HOH
43
3
HOH
HOH
1223
A
HOH
44
3
HOH
HOH
1224
A
HOH
45
3
HOH
HOH
1225
A
HOH
46
3
HOH
HOH
1226
A
HOH
47
3
HOH
HOH
1227
A
HOH
48
3
HOH
HOH
1228
A
HOH
49
3
HOH
HOH
1229
A
HOH
50
3
HOH
HOH
1230
A
HOH
51
3
HOH
HOH
1231
A
HOH
52
3
HOH
HOH
1232
A
HOH
53
3
HOH
HOH
1233
A
HOH
54
3
HOH
HOH
1234
A
HOH
55
3
HOH
HOH
1235
A
HOH
56
3
HOH
HOH
1236
A
HOH
57
3
HOH
HOH
1237
A
HOH
58
3
HOH
HOH
1238
A
HOH
59
3
HOH
HOH
1239
A
HOH
60
3
HOH
HOH
1240
A
HOH
61
3
HOH
HOH
1241
A
HOH
62
3
HOH
HOH
1242
A
HOH
63
3
HOH
HOH
1243
A
HOH
64
3
HOH
HOH
1244
A
HOH
65
3
HOH
HOH
1245
A
HOH
66
3
HOH
HOH
1246
A
HOH
67
3
HOH
HOH
1247
A
HOH
68
3
HOH
HOH
1248
A
HOH
69
3
HOH
HOH
1249
A
HOH
70
3
HOH
HOH
1250
A
HOH
71
3
HOH
HOH
1251
A
HOH
72
3
HOH
HOH
1252
A
HOH
73
3
HOH
HOH
1253
A
HOH
74
3
HOH
HOH
1254
A
HOH
75
3
HOH
HOH
1255
A
HOH
76
3
HOH
HOH
1256
A
HOH
77
3
HOH
HOH
1257
A
HOH
78
3
HOH
HOH
1258
A
HOH
79
3
HOH
HOH
1259
A
HOH
80
3
HOH
HOH
1260
A
HOH
81
3
HOH
HOH
1261
A
HOH
82
3
HOH
HOH
1262
A
HOH
83
3
HOH
HOH
1263
A
HOH
84
3
HOH
HOH
1264
A
HOH
85
3
HOH
HOH
1265
A
HOH
86
3
HOH
HOH
1266
A
HOH
87
3
HOH
HOH
1267
A
HOH
88
3
HOH
HOH
1268
A
HOH
89
3
HOH
HOH
1269
A
HOH
90
3
HOH
HOH
1270
A
HOH
91
3
HOH
HOH
1271
A
HOH
92
3
HOH
HOH
1272
A
HOH
93
3
HOH
HOH
1273
A
HOH
94
3
HOH
HOH
1274
A
HOH
95
3
HOH
HOH
1275
A
HOH
96
3
HOH
HOH
1276
A
HOH
97
3
HOH
HOH
1277
A
HOH
98
3
HOH
HOH
1278
A
HOH
99
3
HOH
HOH
1279
A
HOH
100
3
HOH
HOH
1280
A
HOH
101
3
HOH
HOH
1281
A
HOH
102
3
HOH
HOH
1282
A
HOH
103
3
HOH
HOH
1283
A
HOH
104
3
HOH
HOH
1284
A
HOH
105
3
HOH
HOH
1285
A
HOH
106
3
HOH
HOH
1286
A
HOH
107
3
HOH
HOH
1287
A
HOH
108
3
HOH
HOH
1288
A
HOH
109
3
HOH
HOH
1289
A
HOH
110
3
HOH
HOH
1290
A
HOH
111
3
HOH
HOH
1291
A
HOH
112
3
HOH
HOH
1292
A
HOH
113
3
HOH
HOH
1293
A
HOH
114
3
HOH
HOH
1294
A
HOH
115
3
HOH
HOH
1295
A
HOH
116
3
HOH
HOH
1296
A
HOH
117
3
HOH
HOH
1297
A
HOH
118
3
HOH
HOH
1298
A
HOH
119
3
HOH
HOH
1299
A
HOH
120
3
HOH
HOH
1300
A
HOH
121
3
HOH
HOH
1301
A
HOH
122
3
HOH
HOH
1302
A
HOH
123
3
HOH
HOH
1303
A
HOH
124
3
HOH
HOH
1304
A
HOH
125
3
HOH
HOH
1305
A
HOH
126
3
HOH
HOH
1306
A
HOH
127
3
HOH
HOH
1307
A
HOH
128
3
HOH
HOH
1308
A
HOH
129
3
HOH
HOH
1309
A
HOH
130
3
HOH
HOH
1310
A
HOH
131
3
HOH
HOH
1311
A
HOH
132
3
HOH
HOH
1312
A
HOH
133
3
HOH
HOH
1313
A
HOH
134
3
HOH
HOH
1314
A
HOH
135
3
HOH
HOH
1315
A
HOH
136
3
HOH
HOH
1316
A
HOH
137
3
HOH
HOH
1317
A
HOH
138
3
HOH
HOH
1318
A
HOH
139
3
HOH
HOH
1319
A
HOH
140
3
HOH
HOH
1320
A
HOH
141
3
HOH
HOH
1321
A
HOH
142
3
HOH
HOH
1322
A
HOH
143
3
HOH
HOH
1323
A
HOH
144
3
HOH
HOH
1324
A
HOH
145
3
HOH
HOH
1325
A
HOH
146
3
HOH
HOH
1326
A
HOH
147
3
HOH
HOH
1327
A
HOH
148
3
HOH
HOH
1328
A
HOH
149
3
HOH
HOH
1329
A
HOH
150
3
HOH
HOH
1330
A
HOH
151
3
HOH
HOH
1331
A
HOH
152
3
HOH
HOH
1332
A
HOH
153
3
HOH
HOH
1333
A
HOH
154
3
HOH
HOH
1334
A
HOH
155
3
HOH
HOH
1335
A
HOH
156
3
HOH
HOH
1336
A
HOH
157
3
HOH
HOH
1337
A
HOH
158
3
HOH
HOH
1338
A
HOH
159
3
HOH
HOH
1339
A
HOH
160
3
HOH
HOH
1340
A
HOH
161
3
HOH
HOH
1341
A
HOH
162
3
HOH
HOH
1342
A
HOH
163
3
HOH
HOH
1343
A
HOH
164
3
HOH
HOH
1344
A
HOH
165
3
HOH
HOH
1345
A
HOH
166
3
HOH
HOH
1346
A
HOH
167
3
HOH
HOH
1347
A
HOH
168
3
HOH
HOH
1348
A
HOH
169
3
HOH
HOH
1349
A
HOH
170
3
HOH
HOH
1350
A
HOH
171
3
HOH
HOH
1351
A
HOH
172
3
HOH
HOH
1352
A
HOH
173
3
HOH
HOH
1353
A
HOH
174
3
HOH
HOH
1354
A
HOH
175
3
HOH
HOH
1355
A
HOH
176
3
HOH
HOH
1356
A
HOH
177
3
HOH
HOH
1357
A
HOH
178
3
HOH
HOH
1358
A
HOH
179
3
HOH
HOH
1359
A
HOH
180
3
HOH
HOH
1360
A
MET
1
n
1
MET
1
A
THR
2
n
2
THR
2
A
GLU
3
n
3
GLU
3
A
TYR
4
n
4
TYR
4
A
LYS
5
n
5
LYS
5
A
LEU
6
n
6
LEU
6
A
VAL
7
n
7
VAL
7
A
VAL
8
n
8
VAL
8
A
VAL
9
n
9
VAL
9
A
GLY
10
n
10
GLY
10
A
ALA
11
n
11
ALA
11
A
GLY
12
n
12
GLY
12
A
GLY
13
n
13
GLY
13
A
VAL
14
n
14
VAL
14
A
GLY
15
n
15
GLY
15
A
LYS
16
n
16
LYS
16
A
SER
17
n
17
SER
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
THR
20
n
20
THR
20
A
ILE
21
n
21
ILE
21
A
GLN
22
n
22
GLN
22
A
LEU
23
n
23
LEU
23
A
ILE
24
n
24
ILE
24
A
GLN
25
n
25
GLN
25
A
ASN
26
n
26
ASN
26
A
HIS
27
n
27
HIS
27
A
PHE
28
n
28
PHE
28
A
VAL
29
n
29
VAL
29
A
ASP
30
n
30
ASP
30
A
GLU
31
n
31
GLU
31
A
TYR
32
n
32
TYR
32
A
ASP
33
n
33
ASP
33
A
PRO
34
n
34
PRO
34
A
THR
35
n
35
THR
35
A
ILE
36
n
36
ILE
36
A
GLU
37
n
37
GLU
37
A
ASP
38
n
38
ASP
38
A
SER
39
n
39
SER
39
A
TYR
40
n
40
TYR
40
A
ARG
41
n
41
ARG
41
A
LYS
42
n
42
LYS
42
A
GLN
43
n
43
GLN
43
A
VAL
44
n
44
VAL
44
A
VAL
45
n
45
VAL
45
A
ILE
46
n
46
ILE
46
A
ASP
47
n
47
ASP
47
A
GLY
48
n
48
GLY
48
A
GLU
49
n
49
GLU
49
A
THR
50
n
50
THR
50
A
CYS
51
n
51
CYS
51
A
LEU
52
n
52
LEU
52
A
LEU
53
n
53
LEU
53
A
ASP
54
n
54
ASP
54
A
ILE
55
n
55
ILE
55
A
LEU
56
n
56
LEU
56
A
ASP
57
n
57
ASP
57
A
THR
58
n
58
THR
58
A
ALA
59
n
59
ALA
59
A
GLY
60
n
60
GLY
60
A
n
61
61
A
n
62
62
A
n
63
63
A
n
64
64
A
n
65
65
A
n
66
66
A
n
67
67
A
ARG
68
n
68
ARG
68
A
ASP
69
n
69
ASP
69
A
GLN
70
n
70
GLN
70
A
TYR
71
n
71
TYR
71
A
MET
72
n
72
MET
72
A
ARG
73
n
73
ARG
73
A
THR
74
n
74
THR
74
A
GLY
75
n
75
GLY
75
A
GLU
76
n
76
GLU
76
A
GLY
77
n
77
GLY
77
A
PHE
78
n
78
PHE
78
A
LEU
79
n
79
LEU
79
A
CYS
80
n
80
CYS
80
A
VAL
81
n
81
VAL
81
A
PHE
82
n
82
PHE
82
A
ALA
83
n
83
ALA
83
A
ILE
84
n
84
ILE
84
A
ASN
85
n
85
ASN
85
A
ASN
86
n
86
ASN
86
A
THR
87
n
87
THR
87
A
LYS
88
n
88
LYS
88
A
SER
89
n
89
SER
89
A
PHE
90
n
90
PHE
90
A
GLU
91
n
91
GLU
91
A
ASP
92
n
92
ASP
92
A
ILE
93
n
93
ILE
93
A
HIS
94
n
94
HIS
94
A
GLN
95
n
95
GLN
95
A
TYR
96
n
96
TYR
96
A
ARG
97
n
97
ARG
97
A
GLU
98
n
98
GLU
98
A
GLN
99
n
99
GLN
99
A
ILE
100
n
100
ILE
100
A
LYS
101
n
101
LYS
101
A
ARG
102
n
102
ARG
102
A
VAL
103
n
103
VAL
103
A
LYS
104
n
104
LYS
104
A
ASP
105
n
105
ASP
105
A
SER
106
n
106
SER
106
A
ASP
107
n
107
ASP
107
A
ASP
108
n
108
ASP
108
A
VAL
109
n
109
VAL
109
A
PRO
110
n
110
PRO
110
A
MET
111
n
111
MET
111
A
VAL
112
n
112
VAL
112
A
LEU
113
n
113
LEU
113
A
VAL
114
n
114
VAL
114
A
GLY
115
n
115
GLY
115
A
ASN
116
n
116
ASN
116
A
LYS
117
n
117
LYS
117
A
CYS
118
n
118
CYS
118
A
ASP
119
n
119
ASP
119
A
LEU
120
n
120
LEU
120
A
ALA
121
n
121
ALA
121
A
ALA
122
n
122
ALA
122
A
ARG
123
n
123
ARG
123
A
THR
124
n
124
THR
124
A
VAL
125
n
125
VAL
125
A
GLU
126
n
126
GLU
126
A
SER
127
n
127
SER
127
A
ARG
128
n
128
ARG
128
A
GLN
129
n
129
GLN
129
A
ALA
130
n
130
ALA
130
A
GLN
131
n
131
GLN
131
A
ASP
132
n
132
ASP
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
ARG
135
n
135
ARG
135
A
SER
136
n
136
SER
136
A
TYR
137
n
137
TYR
137
A
GLY
138
n
138
GLY
138
A
ILE
139
n
139
ILE
139
A
PRO
140
n
140
PRO
140
A
TYR
141
n
141
TYR
141
A
ILE
142
n
142
ILE
142
A
GLU
143
n
143
GLU
143
A
THR
144
n
144
THR
144
A
SER
145
n
145
SER
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
THR
148
n
148
THR
148
A
ARG
149
n
149
ARG
149
A
GLN
150
n
150
GLN
150
A
GLY
151
n
151
GLY
151
A
VAL
152
n
152
VAL
152
A
GLU
153
n
153
GLU
153
A
ASP
154
n
154
ASP
154
A
ALA
155
n
155
ALA
155
A
PHE
156
n
156
PHE
156
A
TYR
157
n
157
TYR
157
A
THR
158
n
158
THR
158
A
LEU
159
n
159
LEU
159
A
VAL
160
n
160
VAL
160
A
ARG
161
n
161
ARG
161
A
GLU
162
n
162
GLU
162
A
ILE
163
n
163
ILE
163
A
ARG
164
n
164
ARG
164
A
GLN
165
n
165
GLN
165
A
HIS
166
n
166
HIS
166
A
LYS
167
n
167
LYS
167
A
LEU
168
n
168
LEU
168
A
ARG
169
n
169
ARG
169
A
n
170
170
A
n
171
171
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
46
A
N
ILE
46
A
O
GLU
49
A
O
GLU
49
A
N
LEU
52
A
N
LEU
52
A
O
THR
2
A
O
THR
2
A
N
VAL
7
A
N
VAL
7
A
O
GLY
77
A
O
GLY
77
A
N
CYS
80
A
N
CYS
80
A
O
VAL
112
A
O
VAL
112
A
O
LEU
113
A
O
LEU
113
A
N
ILE
142
A
N
ILE
142
1
A
GLN
61
A
GLN
61
1
Y
1
A
GLU
62
A
GLU
62
1
Y
1
A
GLU
63
A
GLU
63
1
Y
1
A
TYR
64
A
TYR
64
1
Y
1
A
SER
65
A
SER
65
1
Y
1
A
ALA
66
A
ALA
66
1
Y
1
A
MET
67
A
MET
67
1
Y
1
A
LYS
170
A
LYS
170
1
Y
1
A
LEU
171
A
LEU
171
1
Y
1
A
A
O
O
HOH
HOH
1182
1192
2.07
1
A
A
O
O
HOH
HOH
1240
1240
2.03
1_555
8_555
1
A
A
O
O
HOH
HOH
1312
1312
2.11
1_555
11_655
1
A
ASP
33
-41.20
107.82
1
A
LYS
117
72.30
32.17
1
A
ARG
149
82.38
0.28
0.2830000
0.2380000
0.2850000
0.2440000
2.0
20.0
726
14561
14521
5.0
RANDOM
1
2.0
2.0
MAD
mlf
2.0
20.0
180
1500
28
0
1292
0.006
1.11
0.701
1IOZ
13795
1
phasing
SHARP
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
Crystal Structure of the C-HA-RAS Protein Prepared by the Cell-Free Synthesis
1
N
N
2
N
N
3
N
N
A
GLY
15
A
GLY
15
HELX_P
A
ASN
26
A
ASN
26
1
1
12
A
ARG
68
A
ARG
68
HELX_P
A
GLY
75
A
GLY
75
1
2
8
A
ASN
86
A
ASN
86
HELX_P
A
ASP
92
A
ASP
92
1
3
7
A
ASP
92
A
ASP
92
HELX_P
A
ASP
105
A
ASP
105
1
4
14
A
GLU
126
A
GLU
126
HELX_P
A
GLY
138
A
GLY
138
1
5
13
A
GLY
151
A
GLY
151
HELX_P
A
ARG
169
A
ARG
169
1
6
19
SIGNALING PROTEIN
RAS, ONCOGENE PROTEIN, GTP-BINDING PROTEIN, CELL-FREE PROTEIN SYNTHESIS, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, SIGNALING PROTEIN
RASH_HUMAN
UNP
1
1
P01112
1
171
1IOZ
1
171
P01112
A
1
1
171
6
anti-parallel
parallel
parallel
parallel
parallel
A
ASP
38
A
ASP
38
A
ILE
46
A
ILE
46
A
GLU
49
A
GLU
49
A
ASP
57
A
ASP
57
A
THR
2
A
THR
2
A
GLY
10
A
GLY
10
A
GLY
77
A
GLY
77
A
ALA
83
A
ALA
83
A
MET
111
A
MET
111
A
ASN
116
A
ASN
116
A
TYR
141
A
TYR
141
A
GLU
143
A
GLU
143
BINDING SITE FOR RESIDUE GDP A 1180
A
GDP
1180
Software
18
A
GLY
13
A
GLY
13
18
1_555
A
VAL
14
A
VAL
14
18
1_555
A
GLY
15
A
GLY
15
18
1_555
A
LYS
16
A
LYS
16
18
1_555
A
SER
17
A
SER
17
18
1_555
A
ALA
18
A
ALA
18
18
1_555
A
PHE
28
A
PHE
28
18
1_555
A
ASP
30
A
ASP
30
18
1_555
A
ASN
116
A
ASN
116
18
1_555
A
LYS
117
A
LYS
117
18
1_555
A
ASP
119
A
ASP
119
18
1_555
A
LEU
120
A
LEU
120
18
1_555
A
SER
145
A
SER
145
18
1_555
A
ALA
146
A
ALA
146
18
1_555
A
LYS
147
A
LYS
147
18
1_555
A
HOH
1234
C
HOH
18
1_555
A
HOH
1300
C
HOH
18
1_555
A
HOH
1311
C
HOH
18
1_555
179
P 65 2 2