0.011203
0.000000
0.000000
0.000000
0.011203
0.000000
0.000000
0.000000
0.025967
0.00000
0.00000
0.00000
Tomoo, K.
Shen, X.
Okabe, K.
Nozoe, Y.
Fukuhara, S.
Morino, S.
Ishida, T.
Taniguchi, T.
Hasegawa, H.
Terashima, A.
Sasaki, M.
Katsuya, Y.
Kitamura, K.
Miyoshi, H.
Ishikawa, M.
Miura, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90
90
90
89.26
89.26
38.51
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C21 H30 N10 O17 P3 1
787.441
P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE
7-METHYL-GPPPA
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
N
O
N
139
N
C
Y
140
N
C
Y
141
N
N
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
N
146
N
N
N
147
N
C
N
148
N
N
N
149
N
O
N
150
R
C
N
151
R
C
N
152
S
C
N
153
R
C
N
154
N
C
N
155
N
O
N
156
N
O
N
157
R
P
N
158
N
O
N
159
N
O
N
160
N
O
N
161
N
O
N
162
S
P
N
163
N
O
N
164
N
O
N
165
N
O
N
166
S
P
N
167
N
O
N
168
N
O
N
169
N
O
N
170
N
C
N
171
R
C
N
172
N
O
N
173
S
C
N
174
N
O
N
175
R
C
N
176
N
O
N
177
R
C
Y
178
N
N
Y
179
N
C
Y
180
N
N
Y
181
N
C
Y
182
N
C
N
183
N
N
Y
184
N
N
Y
185
N
C
Y
186
N
N
Y
187
N
C
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
Y
223
N
C
Y
224
N
N
Y
225
N
C
Y
226
N
C
Y
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
S
C
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
N
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
C
N
317
N
S
N
318
N
C
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
N
359
N
C
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
N
376
N
O
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
R
C
N
390
N
O
N
391
N
C
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
N
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
N
440
N
O
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
N
N
454
S
C
N
455
N
C
N
456
N
O
N
457
N
C
N
458
N
C
N
459
N
C
N
460
N
O
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
Y
135
N
sing
Y
136
N
doub
N
137
N
sing
Y
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
Y
142
N
sing
N
143
N
sing
Y
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
Y
200
N
sing
Y
201
N
sing
Y
202
N
doub
N
203
N
sing
Y
204
N
sing
Y
205
N
doub
Y
206
N
sing
N
207
N
sing
Y
208
N
sing
N
209
N
sing
N
210
N
sing
Y
211
N
doub
Y
212
N
sing
N
213
N
sing
Y
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
Y
226
N
sing
Y
227
N
doub
Y
228
N
doub
N
229
N
sing
Y
230
N
sing
N
231
N
sing
Y
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
doub
N
341
N
sing
Y
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
doub
Y
408
N
sing
Y
409
N
sing
N
410
N
sing
Y
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
doub
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
Y
431
N
doub
Y
432
N
sing
Y
433
N
sing
N
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
UK
BIOCHEM.J.
BIJOAK
0043
0264-6021
362
539
544
10.1042/0264-6021:3620539
11879179
Crystal structures of 7-methylguanosine 5'-triphosphate (m(7)GTP)- and
P(1)-7-methylguanosine-P(3)-adenosine-5',5'-triphosphate (m(7)GpppA)-bound human full-length eukaryotic
initiation factor 4E: biological importance of the C-terminal flexible region
2002
10.2210/pdb1ipb/pdb
pdb_00001ipb
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
x-ray
1
1.0
BL24XU
SPring-8
SYNCHROTRON
SPRING-8 BEAMLINE BL24XU
25130.242
EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
1
man
polymer
787.441
P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE
1
syn
non-polymer
18.015
water
138
nat
water
no
no
MATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQ
LSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKG
DKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV
MATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQ
LSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKG
DKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
PLASMID
PGEMEX
3.05
59.68
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2002-05-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1IPC contains the same protein complexed with 7-methyl GTP
PDBJ
Y
PDBJ
2001-05-08
REL
REL
GTA
P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE
HOH
water
GTA
1000
2
GTA
GTA
1000
A
TIP
1
3
HOH
HOH
1001
A
TIP
2
3
HOH
HOH
1002
A
TIP
3
3
HOH
HOH
1003
A
TIP
4
3
HOH
HOH
1004
A
TIP
5
3
HOH
HOH
1005
A
TIP
6
3
HOH
HOH
1006
A
TIP
7
3
HOH
HOH
1007
A
TIP
8
3
HOH
HOH
1008
A
TIP
9
3
HOH
HOH
1009
A
TIP
10
3
HOH
HOH
1010
A
TIP
11
3
HOH
HOH
1011
A
TIP
12
3
HOH
HOH
1012
A
TIP
13
3
HOH
HOH
1013
A
TIP
14
3
HOH
HOH
1014
A
TIP
15
3
HOH
HOH
1015
A
TIP
16
3
HOH
HOH
1016
A
TIP
17
3
HOH
HOH
1017
A
TIP
18
3
HOH
HOH
1018
A
TIP
19
3
HOH
HOH
1019
A
TIP
20
3
HOH
HOH
1020
A
TIP
21
3
HOH
HOH
1021
A
TIP
22
3
HOH
HOH
1022
A
TIP
23
3
HOH
HOH
1023
A
TIP
24
3
HOH
HOH
1024
A
TIP
25
3
HOH
HOH
1025
A
TIP
26
3
HOH
HOH
1026
A
TIP
27
3
HOH
HOH
1027
A
TIP
28
3
HOH
HOH
1028
A
TIP
29
3
HOH
HOH
1029
A
TIP
30
3
HOH
HOH
1030
A
TIP
31
3
HOH
HOH
1031
A
TIP
32
3
HOH
HOH
1032
A
TIP
33
3
HOH
HOH
1033
A
TIP
34
3
HOH
HOH
1034
A
TIP
35
3
HOH
HOH
1035
A
TIP
36
3
HOH
HOH
1036
A
TIP
37
3
HOH
HOH
1037
A
TIP
38
3
HOH
HOH
1038
A
TIP
39
3
HOH
HOH
1039
A
TIP
40
3
HOH
HOH
1040
A
TIP
41
3
HOH
HOH
1041
A
TIP
42
3
HOH
HOH
1042
A
TIP
43
3
HOH
HOH
1043
A
TIP
44
3
HOH
HOH
1044
A
TIP
45
3
HOH
HOH
1045
A
TIP
46
3
HOH
HOH
1046
A
TIP
47
3
HOH
HOH
1047
A
TIP
48
3
HOH
HOH
1048
A
TIP
49
3
HOH
HOH
1049
A
TIP
50
3
HOH
HOH
1050
A
TIP
51
3
HOH
HOH
1051
A
TIP
52
3
HOH
HOH
1052
A
TIP
53
3
HOH
HOH
1053
A
TIP
54
3
HOH
HOH
1054
A
TIP
55
3
HOH
HOH
1055
A
TIP
56
3
HOH
HOH
1056
A
TIP
57
3
HOH
HOH
1057
A
TIP
58
3
HOH
HOH
1058
A
TIP
59
3
HOH
HOH
1059
A
TIP
60
3
HOH
HOH
1060
A
TIP
61
3
HOH
HOH
1061
A
TIP
62
3
HOH
HOH
1062
A
TIP
63
3
HOH
HOH
1063
A
TIP
64
3
HOH
HOH
1064
A
TIP
65
3
HOH
HOH
1065
A
TIP
66
3
HOH
HOH
1066
A
TIP
67
3
HOH
HOH
1067
A
TIP
68
3
HOH
HOH
1068
A
TIP
69
3
HOH
HOH
1069
A
TIP
70
3
HOH
HOH
1070
A
TIP
71
3
HOH
HOH
1071
A
TIP
72
3
HOH
HOH
1072
A
TIP
73
3
HOH
HOH
1073
A
TIP
74
3
HOH
HOH
1074
A
TIP
75
3
HOH
HOH
1075
A
TIP
76
3
HOH
HOH
1076
A
TIP
77
3
HOH
HOH
1077
A
TIP
78
3
HOH
HOH
1078
A
TIP
79
3
HOH
HOH
1079
A
TIP
80
3
HOH
HOH
1080
A
TIP
81
3
HOH
HOH
1081
A
TIP
82
3
HOH
HOH
1082
A
TIP
83
3
HOH
HOH
1083
A
TIP
84
3
HOH
HOH
1084
A
TIP
85
3
HOH
HOH
1085
A
TIP
86
3
HOH
HOH
1086
A
TIP
87
3
HOH
HOH
1087
A
TIP
88
3
HOH
HOH
1088
A
TIP
89
3
HOH
HOH
1089
A
TIP
90
3
HOH
HOH
1090
A
TIP
91
3
HOH
HOH
1091
A
TIP
92
3
HOH
HOH
1092
A
TIP
93
3
HOH
HOH
1093
A
TIP
94
3
HOH
HOH
1094
A
TIP
95
3
HOH
HOH
1095
A
TIP
96
3
HOH
HOH
1096
A
TIP
97
3
HOH
HOH
1097
A
TIP
98
3
HOH
HOH
1098
A
TIP
99
3
HOH
HOH
1099
A
TIP
100
3
HOH
HOH
1100
A
TIP
101
3
HOH
HOH
1101
A
TIP
102
3
HOH
HOH
1102
A
TIP
103
3
HOH
HOH
1103
A
TIP
104
3
HOH
HOH
1104
A
TIP
105
3
HOH
HOH
1105
A
TIP
106
3
HOH
HOH
1106
A
TIP
107
3
HOH
HOH
1107
A
TIP
108
3
HOH
HOH
1108
A
TIP
109
3
HOH
HOH
1109
A
TIP
111
3
HOH
HOH
1110
A
TIP
112
3
HOH
HOH
1111
A
TIP
113
3
HOH
HOH
1112
A
TIP
114
3
HOH
HOH
1113
A
TIP
115
3
HOH
HOH
1114
A
TIP
116
3
HOH
HOH
1115
A
TIP
117
3
HOH
HOH
1116
A
TIP
118
3
HOH
HOH
1117
A
TIP
119
3
HOH
HOH
1118
A
TIP
120
3
HOH
HOH
1119
A
TIP
121
3
HOH
HOH
1120
A
TIP
122
3
HOH
HOH
1121
A
TIP
123
3
HOH
HOH
1122
A
TIP
124
3
HOH
HOH
1123
A
TIP
125
3
HOH
HOH
1124
A
TIP
126
3
HOH
HOH
1125
A
TIP
127
3
HOH
HOH
1126
A
TIP
128
3
HOH
HOH
1127
A
TIP
129
3
HOH
HOH
1128
A
TIP
130
3
HOH
HOH
1129
A
TIP
131
3
HOH
HOH
1130
A
TIP
132
3
HOH
HOH
1131
A
TIP
133
3
HOH
HOH
1132
A
TIP
134
3
HOH
HOH
1133
A
TIP
135
3
HOH
HOH
1134
A
TIP
136
3
HOH
HOH
1135
A
TIP
137
3
HOH
HOH
1136
A
TIP
138
3
HOH
HOH
1137
A
TIP
139
3
HOH
HOH
1138
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
n
25
25
A
n
26
26
A
GLU
27
n
27
GLU
27
A
VAL
28
n
28
VAL
28
A
ALA
29
n
29
ALA
29
A
ASN
30
n
30
ASN
30
A
PRO
31
n
31
PRO
31
A
GLU
32
n
32
GLU
32
A
HIS
33
n
33
HIS
33
A
TYR
34
n
34
TYR
34
A
ILE
35
n
35
ILE
35
A
LYS
36
n
36
LYS
36
A
HIS
37
n
37
HIS
37
A
PRO
38
n
38
PRO
38
A
LEU
39
n
39
LEU
39
A
GLN
40
n
40
GLN
40
A
ASN
41
n
41
ASN
41
A
ARG
42
n
42
ARG
42
A
TRP
43
n
43
TRP
43
A
ALA
44
n
44
ALA
44
A
LEU
45
n
45
LEU
45
A
TRP
46
n
46
TRP
46
A
PHE
47
n
47
PHE
47
A
PHE
48
n
48
PHE
48
A
LYS
49
n
49
LYS
49
A
ASN
50
n
50
ASN
50
A
ASP
51
n
51
ASP
51
A
LYS
52
n
52
LYS
52
A
SER
53
n
53
SER
53
A
LYS
54
n
54
LYS
54
A
THR
55
n
55
THR
55
A
TRP
56
n
56
TRP
56
A
GLN
57
n
57
GLN
57
A
ALA
58
n
58
ALA
58
A
ASN
59
n
59
ASN
59
A
LEU
60
n
60
LEU
60
A
ARG
61
n
61
ARG
61
A
LEU
62
n
62
LEU
62
A
ILE
63
n
63
ILE
63
A
SER
64
n
64
SER
64
A
LYS
65
n
65
LYS
65
A
PHE
66
n
66
PHE
66
A
ASP
67
n
67
ASP
67
A
THR
68
n
68
THR
68
A
VAL
69
n
69
VAL
69
A
GLU
70
n
70
GLU
70
A
ASP
71
n
71
ASP
71
A
PHE
72
n
72
PHE
72
A
TRP
73
n
73
TRP
73
A
ALA
74
n
74
ALA
74
A
LEU
75
n
75
LEU
75
A
TYR
76
n
76
TYR
76
A
ASN
77
n
77
ASN
77
A
HIS
78
n
78
HIS
78
A
ILE
79
n
79
ILE
79
A
GLN
80
n
80
GLN
80
A
LEU
81
n
81
LEU
81
A
SER
82
n
82
SER
82
A
SER
83
n
83
SER
83
A
ASN
84
n
84
ASN
84
A
LEU
85
n
85
LEU
85
A
MET
86
n
86
MET
86
A
PRO
87
n
87
PRO
87
A
GLY
88
n
88
GLY
88
A
CYS
89
n
89
CYS
89
A
ASP
90
n
90
ASP
90
A
TYR
91
n
91
TYR
91
A
SER
92
n
92
SER
92
A
LEU
93
n
93
LEU
93
A
PHE
94
n
94
PHE
94
A
LYS
95
n
95
LYS
95
A
ASP
96
n
96
ASP
96
A
GLY
97
n
97
GLY
97
A
ILE
98
n
98
ILE
98
A
GLU
99
n
99
GLU
99
A
PRO
100
n
100
PRO
100
A
MET
101
n
101
MET
101
A
TRP
102
n
102
TRP
102
A
GLU
103
n
103
GLU
103
A
ASP
104
n
104
ASP
104
A
GLU
105
n
105
GLU
105
A
LYS
106
n
106
LYS
106
A
ASN
107
n
107
ASN
107
A
LYS
108
n
108
LYS
108
A
ARG
109
n
109
ARG
109
A
GLY
110
n
110
GLY
110
A
GLY
111
n
111
GLY
111
A
ARG
112
n
112
ARG
112
A
TRP
113
n
113
TRP
113
A
LEU
114
n
114
LEU
114
A
ILE
115
n
115
ILE
115
A
THR
116
n
116
THR
116
A
LEU
117
n
117
LEU
117
A
ASN
118
n
118
ASN
118
A
LYS
119
n
119
LYS
119
A
GLN
120
n
120
GLN
120
A
GLN
121
n
121
GLN
121
A
ARG
122
n
122
ARG
122
A
ARG
123
n
123
ARG
123
A
SER
124
n
124
SER
124
A
ASP
125
n
125
ASP
125
A
LEU
126
n
126
LEU
126
A
ASP
127
n
127
ASP
127
A
ARG
128
n
128
ARG
128
A
PHE
129
n
129
PHE
129
A
TRP
130
n
130
TRP
130
A
LEU
131
n
131
LEU
131
A
GLU
132
n
132
GLU
132
A
THR
133
n
133
THR
133
A
LEU
134
n
134
LEU
134
A
LEU
135
n
135
LEU
135
A
CYS
136
n
136
CYS
136
A
LEU
137
n
137
LEU
137
A
ILE
138
n
138
ILE
138
A
GLY
139
n
139
GLY
139
A
GLU
140
n
140
GLU
140
A
SER
141
n
141
SER
141
A
PHE
142
n
142
PHE
142
A
ASP
143
n
143
ASP
143
A
ASP
144
n
144
ASP
144
A
TYR
145
n
145
TYR
145
A
SER
146
n
146
SER
146
A
ASP
147
n
147
ASP
147
A
ASP
148
n
148
ASP
148
A
VAL
149
n
149
VAL
149
A
CYS
150
n
150
CYS
150
A
GLY
151
n
151
GLY
151
A
ALA
152
n
152
ALA
152
A
VAL
153
n
153
VAL
153
A
VAL
154
n
154
VAL
154
A
ASN
155
n
155
ASN
155
A
VAL
156
n
156
VAL
156
A
ARG
157
n
157
ARG
157
A
ALA
158
n
158
ALA
158
A
LYS
159
n
159
LYS
159
A
GLY
160
n
160
GLY
160
A
ASP
161
n
161
ASP
161
A
LYS
162
n
162
LYS
162
A
ILE
163
n
163
ILE
163
A
ALA
164
n
164
ALA
164
A
ILE
165
n
165
ILE
165
A
TRP
166
n
166
TRP
166
A
THR
167
n
167
THR
167
A
THR
168
n
168
THR
168
A
GLU
169
n
169
GLU
169
A
CYS
170
n
170
CYS
170
A
GLU
171
n
171
GLU
171
A
ASN
172
n
172
ASN
172
A
ARG
173
n
173
ARG
173
A
GLU
174
n
174
GLU
174
A
ALA
175
n
175
ALA
175
A
VAL
176
n
176
VAL
176
A
THR
177
n
177
THR
177
A
HIS
178
n
178
HIS
178
A
ILE
179
n
179
ILE
179
A
GLY
180
n
180
GLY
180
A
ARG
181
n
181
ARG
181
A
VAL
182
n
182
VAL
182
A
TYR
183
n
183
TYR
183
A
LYS
184
n
184
LYS
184
A
GLU
185
n
185
GLU
185
A
ARG
186
n
186
ARG
186
A
LEU
187
n
187
LEU
187
A
GLY
188
n
188
GLY
188
A
LEU
189
n
189
LEU
189
A
PRO
190
n
190
PRO
190
A
PRO
191
n
191
PRO
191
A
LYS
192
n
192
LYS
192
A
ILE
193
n
193
ILE
193
A
VAL
194
n
194
VAL
194
A
ILE
195
n
195
ILE
195
A
GLY
196
n
196
GLY
196
A
TYR
197
n
197
TYR
197
A
GLN
198
n
198
GLN
198
A
SER
199
n
199
SER
199
A
HIS
200
n
200
HIS
200
A
ALA
201
n
201
ALA
201
A
ASP
202
n
202
ASP
202
A
THR
203
n
203
THR
203
A
ALA
204
n
204
ALA
204
A
THR
205
n
205
THR
205
A
LYS
206
n
206
LYS
206
A
SER
207
n
207
SER
207
A
GLY
208
n
208
GLY
208
A
SER
209
n
209
SER
209
A
THR
210
n
210
THR
210
A
THR
211
n
211
THR
211
A
LYS
212
n
212
LYS
212
A
ASN
213
n
213
ASN
213
A
ARG
214
n
214
ARG
214
A
PHE
215
n
215
PHE
215
A
VAL
216
n
216
VAL
216
A
VAL
217
n
217
VAL
217
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASP
67
A
O
ASP
67
A
N
LEU
39
A
N
LEU
39
A
N
PHE
48
A
N
PHE
48
A
O
ASP
90
A
O
ASP
90
A
N
LYS
95
A
N
LYS
95
A
O
CYS
150
A
O
CYS
150
A
N
ASN
155
A
N
ASN
155
A
O
LYS
162
A
O
LYS
162
A
N
THR
167
A
N
THR
167
A
O
GLY
111
A
O
GLY
111
A
N
LEU
114
A
N
LEU
114
A
O
GLY
196
A
O
GLY
196
A
N
TYR
197
A
N
TYR
197
A
O
PHE
215
A
O
PHE
215
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
THR
3
A
THR
3
1
Y
1
A
VAL
4
A
VAL
4
1
Y
1
A
GLU
5
A
GLU
5
1
Y
1
A
PRO
6
A
PRO
6
1
Y
1
A
GLU
7
A
GLU
7
1
Y
1
A
THR
8
A
THR
8
1
Y
1
A
THR
9
A
THR
9
1
Y
1
A
PRO
10
A
PRO
10
1
Y
1
A
THR
11
A
THR
11
1
Y
1
A
PRO
12
A
PRO
12
1
Y
1
A
ASN
13
A
ASN
13
1
Y
1
A
PRO
14
A
PRO
14
1
Y
1
A
PRO
15
A
PRO
15
1
Y
1
A
THR
16
A
THR
16
1
Y
1
A
THR
17
A
THR
17
1
Y
1
A
GLU
18
A
GLU
18
1
Y
1
A
GLU
19
A
GLU
19
1
Y
1
A
GLU
20
A
GLU
20
1
Y
1
A
LYS
21
A
LYS
21
1
Y
1
A
THR
22
A
THR
22
1
Y
1
A
GLU
23
A
GLU
23
1
Y
1
A
SER
24
A
SER
24
1
Y
1
A
ASN
25
A
ASN
25
1
Y
1
A
GLN
26
A
GLN
26
1
Y
1
A
TYR
34
-142.08
-15.13
1
A
ILE
63
-97.81
-72.57
1
A
ASP
67
-142.30
23.34
1
A
ASP
143
44.54
-115.12
1
A
SER
207
-50.20
94.01
0.2290000
0.1960000
2.0
30
1657
20843
17165
1
2
2.0
30
138
1761
51
0
1572
0.0068
1.281
22.24
0.685
refinement
CNS
phasing
CNS
CRYSTAL STRUCTURE OF EUKARYOTIC INITIATION FACTOR 4E COMPLEXED WITH 7-METHYL GPPPA
1
N
N
2
N
N
3
N
N
A
ASN
30
A
ASN
30
HELX_P
A
TYR
34
A
TYR
34
5
1
5
A
TRP
56
A
TRP
56
HELX_P
A
ALA
58
A
ALA
58
5
2
3
A
VAL
69
A
VAL
69
HELX_P
A
ILE
79
A
ILE
79
1
3
11
A
LEU
81
A
LEU
81
HELX_P
A
LEU
85
A
LEU
85
5
4
5
A
GLN
120
A
GLN
120
HELX_P
A
ASP
125
A
ASP
125
1
5
6
A
ASP
125
A
ASP
125
HELX_P
A
GLY
139
A
GLY
139
1
6
15
A
PHE
142
A
PHE
142
HELX_P
A
ASP
147
A
ASP
147
5
7
6
A
ASN
172
A
ASN
172
HELX_P
A
GLY
188
A
GLY
188
1
8
17
A
ALA
201
A
ALA
201
HELX_P
A
THR
203
A
THR
203
5
9
3
RNA BINDING PROTEIN
Initiation factor, Protein biosynthesis, RNA BINDING PROTEIN
IF4E_HUMAN
UNP
1
1
P06730
MATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQ
LSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKG
DKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV
1
217
1IPB
1
217
P06730
A
1
1
217
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
60
A
LEU
60
A
THR
68
A
THR
68
A
PRO
38
A
PRO
38
A
PHE
48
A
PHE
48
A
ASP
90
A
ASP
90
A
LYS
95
A
LYS
95
A
VAL
149
A
VAL
149
A
ASN
155
A
ASN
155
A
LYS
162
A
LYS
162
A
THR
167
A
THR
167
A
GLY
111
A
GLY
111
A
THR
116
A
THR
116
A
GLY
196
A
GLY
196
A
SER
199
A
SER
199
A
PHE
215
A
PHE
215
A
VAL
216
A
VAL
216
BINDING SITE FOR RESIDUE GTA A 1000
A
GTA
1000
Software
23
A
TRP
56
A
TRP
56
23
1_555
A
GLN
57
A
GLN
57
23
1_555
A
MET
101
A
MET
101
23
1_555
A
TRP
102
A
TRP
102
23
1_555
A
GLU
103
A
GLU
103
23
1_555
A
ARG
157
A
ARG
157
23
1_555
A
LYS
162
A
LYS
162
23
1_555
A
PRO
191
A
PRO
191
23
4_645
A
LYS
192
A
LYS
192
23
4_645
A
ILE
193
A
ILE
193
23
4_645
A
VAL
194
A
VAL
194
23
4_645
A
ALA
204
A
ALA
204
23
1_555
A
THR
205
A
THR
205
23
1_555
A
LYS
206
A
LYS
206
23
1_555
A
SER
207
A
SER
207
23
1_555
A
VAL
217
A
VAL
217
23
4_645
A
HOH
1013
C
HOH
23
1_555
A
HOH
1034
C
HOH
23
1_555
A
HOH
1045
C
HOH
23
4_645
A
HOH
1074
C
HOH
23
1_555
A
HOH
1089
C
HOH
23
1_555
A
HOH
1097
C
HOH
23
1_555
A
HOH
1113
C
HOH
23
1_555
78
P 43