0.016675
0.009627
0.000000
0.000000
0.019255
0.000000
0.000000
0.000000
0.007432
0.00000
0.00000
0.00000
Nishino, T.
Komori, K.
Ishino, Y.
Morikawa, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
59.969
59.969
134.554
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
276
35735
35740
10.1074/jbc.M104460200
11441015
Dissection of the regional roles of the archaeal Holliday junction resolvase Hjc by structural and mutational analyses.
2001
10.2210/pdb1ipi/pdb
pdb_00001ipi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2000-12-11
RIGAKU RAXIS
DIAMOND
SINGLE WAVELENGTH
M
x-ray
1
0.834
1.0
BL24XU
SPring-8
0.834
SYNCHROTRON
SPRING-8 BEAMLINE BL24XU
13792.379
HOLLIDAY JUNCTION RESOLVASE
3.1.22.4
2
man
polymer
18.015
water
157
nat
water
HJC
no
no
MYRKGAQAERELIKLLEKHGFAVVRSAGSKKVDLVAGNGKKYLCIEVKVTKKDHLYVGKRDMGRLIEFSRRFGGIPVLAV
KFLNVGWRFIEVSPKIEKFVFTPSSGVSLEVLLGIQKTLEGKS
MYRKGAQAERELIKLLEKHGFAVVRSAGSKKVDLVAGNGKKYLCIEVKVTKKDHLYVGKRDMGRLIEFSRRFGGIPVLAV
KFLNVGWRFIEVSPKIEKFVFTPSSGVSLEVLLGIQKTLEGKS
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Pyrococcus
Escherichia
Escherichia coli
sample
HJC
2261
Pyrococcus furiosus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
PET21
1
2.53
51.41
VAPOR DIFFUSION
7.0
100mM Tris-HCl, 1mM EDTA, 32.5% PEG4000, 10% glycerol , pH 7.0, VAPOR DIFFUSION, temperature 297K
297
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2001-11-28
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-10-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
1GEF is crystallized with ammonium sulfate.
PDBJ
Y
PDBJ
2001-05-15
REL
REL
HOH
water
1GEF
PDB ENTRY 1GEF functional dimer
PDB
experimental model
HOH
2
2
HOH
HOH
124
A
HOH
3
2
HOH
HOH
125
A
HOH
4
2
HOH
HOH
126
A
HOH
5
2
HOH
HOH
127
A
HOH
7
2
HOH
HOH
128
A
HOH
8
2
HOH
HOH
129
A
HOH
9
2
HOH
HOH
130
A
HOH
10
2
HOH
HOH
131
A
HOH
12
2
HOH
HOH
132
A
HOH
13
2
HOH
HOH
133
A
HOH
14
2
HOH
HOH
134
A
HOH
15
2
HOH
HOH
135
A
HOH
16
2
HOH
HOH
136
A
HOH
17
2
HOH
HOH
137
A
HOH
18
2
HOH
HOH
138
A
HOH
19
2
HOH
HOH
139
A
HOH
20
2
HOH
HOH
140
A
HOH
21
2
HOH
HOH
141
A
HOH
22
2
HOH
HOH
142
A
HOH
23
2
HOH
HOH
143
A
HOH
24
2
HOH
HOH
144
A
HOH
25
2
HOH
HOH
145
A
HOH
26
2
HOH
HOH
146
A
HOH
27
2
HOH
HOH
147
A
HOH
28
2
HOH
HOH
148
A
HOH
29
2
HOH
HOH
149
A
HOH
30
2
HOH
HOH
150
A
HOH
31
2
HOH
HOH
151
A
HOH
32
2
HOH
HOH
152
A
HOH
33
2
HOH
HOH
153
A
HOH
34
2
HOH
HOH
154
A
HOH
35
2
HOH
HOH
155
A
HOH
36
2
HOH
HOH
156
A
HOH
37
2
HOH
HOH
157
A
HOH
38
2
HOH
HOH
158
A
HOH
39
2
HOH
HOH
159
A
HOH
40
2
HOH
HOH
160
A
HOH
41
2
HOH
HOH
161
A
HOH
42
2
HOH
HOH
162
A
HOH
44
2
HOH
HOH
163
A
HOH
45
2
HOH
HOH
164
A
HOH
55
2
HOH
HOH
165
A
HOH
75
2
HOH
HOH
166
A
HOH
76
2
HOH
HOH
167
A
HOH
77
2
HOH
HOH
168
A
HOH
78
2
HOH
HOH
169
A
HOH
79
2
HOH
HOH
170
A
HOH
80
2
HOH
HOH
171
A
HOH
81
2
HOH
HOH
172
A
HOH
82
2
HOH
HOH
173
A
HOH
83
2
HOH
HOH
174
A
HOH
84
2
HOH
HOH
175
A
HOH
87
2
HOH
HOH
176
A
HOH
88
2
HOH
HOH
177
A
HOH
89
2
HOH
HOH
178
A
HOH
90
2
HOH
HOH
179
A
HOH
91
2
HOH
HOH
180
A
HOH
92
2
HOH
HOH
181
A
HOH
93
2
HOH
HOH
182
A
HOH
94
2
HOH
HOH
183
A
HOH
95
2
HOH
HOH
184
A
HOH
96
2
HOH
HOH
185
A
HOH
97
2
HOH
HOH
186
A
HOH
98
2
HOH
HOH
187
A
HOH
99
2
HOH
HOH
188
A
HOH
100
2
HOH
HOH
189
A
HOH
101
2
HOH
HOH
190
A
HOH
102
2
HOH
HOH
191
A
HOH
103
2
HOH
HOH
192
A
HOH
104
2
HOH
HOH
193
A
HOH
105
2
HOH
HOH
194
A
HOH
121
2
HOH
HOH
195
A
HOH
122
2
HOH
HOH
196
A
HOH
125
2
HOH
HOH
197
A
HOH
126
2
HOH
HOH
198
A
HOH
127
2
HOH
HOH
199
A
HOH
128
2
HOH
HOH
200
A
HOH
129
2
HOH
HOH
201
A
HOH
130
2
HOH
HOH
202
A
HOH
131
2
HOH
HOH
203
A
HOH
132
2
HOH
HOH
204
A
HOH
133
2
HOH
HOH
205
A
HOH
134
2
HOH
HOH
206
A
HOH
135
2
HOH
HOH
207
A
HOH
136
2
HOH
HOH
208
A
HOH
137
2
HOH
HOH
209
A
HOH
138
2
HOH
HOH
210
A
HOH
143
2
HOH
HOH
211
A
HOH
148
2
HOH
HOH
212
A
HOH
153
2
HOH
HOH
213
A
HOH
1
2
HOH
HOH
124
B
HOH
6
2
HOH
HOH
125
B
HOH
11
2
HOH
HOH
126
B
HOH
43
2
HOH
HOH
127
B
HOH
46
2
HOH
HOH
128
B
HOH
47
2
HOH
HOH
129
B
HOH
48
2
HOH
HOH
130
B
HOH
49
2
HOH
HOH
131
B
HOH
50
2
HOH
HOH
132
B
HOH
51
2
HOH
HOH
133
B
HOH
52
2
HOH
HOH
134
B
HOH
53
2
HOH
HOH
135
B
HOH
54
2
HOH
HOH
136
B
HOH
56
2
HOH
HOH
137
B
HOH
57
2
HOH
HOH
138
B
HOH
58
2
HOH
HOH
139
B
HOH
59
2
HOH
HOH
140
B
HOH
60
2
HOH
HOH
141
B
HOH
61
2
HOH
HOH
142
B
HOH
62
2
HOH
HOH
143
B
HOH
63
2
HOH
HOH
144
B
HOH
64
2
HOH
HOH
145
B
HOH
65
2
HOH
HOH
146
B
HOH
66
2
HOH
HOH
147
B
HOH
67
2
HOH
HOH
148
B
HOH
68
2
HOH
HOH
149
B
HOH
69
2
HOH
HOH
150
B
HOH
70
2
HOH
HOH
151
B
HOH
71
2
HOH
HOH
152
B
HOH
72
2
HOH
HOH
153
B
HOH
73
2
HOH
HOH
154
B
HOH
74
2
HOH
HOH
155
B
HOH
85
2
HOH
HOH
156
B
HOH
86
2
HOH
HOH
157
B
HOH
106
2
HOH
HOH
158
B
HOH
107
2
HOH
HOH
159
B
HOH
108
2
HOH
HOH
160
B
HOH
109
2
HOH
HOH
161
B
HOH
110
2
HOH
HOH
162
B
HOH
111
2
HOH
HOH
163
B
HOH
112
2
HOH
HOH
164
B
HOH
113
2
HOH
HOH
165
B
HOH
114
2
HOH
HOH
166
B
HOH
115
2
HOH
HOH
167
B
HOH
116
2
HOH
HOH
168
B
HOH
117
2
HOH
HOH
169
B
HOH
118
2
HOH
HOH
170
B
HOH
119
2
HOH
HOH
171
B
HOH
120
2
HOH
HOH
172
B
HOH
123
2
HOH
HOH
173
B
HOH
124
2
HOH
HOH
174
B
HOH
139
2
HOH
HOH
175
B
HOH
140
2
HOH
HOH
176
B
HOH
141
2
HOH
HOH
177
B
HOH
142
2
HOH
HOH
178
B
HOH
144
2
HOH
HOH
179
B
HOH
145
2
HOH
HOH
180
B
HOH
146
2
HOH
HOH
181
B
HOH
147
2
HOH
HOH
182
B
HOH
149
2
HOH
HOH
183
B
HOH
150
2
HOH
HOH
184
B
HOH
151
2
HOH
HOH
185
B
HOH
152
2
HOH
HOH
186
B
HOH
154
2
HOH
HOH
187
B
HOH
155
2
HOH
HOH
188
B
HOH
156
2
HOH
HOH
189
B
HOH
157
2
HOH
HOH
190
B
MET
1
n
1
MET
1
A
TYR
2
n
2
TYR
2
A
ARG
3
n
3
ARG
3
A
LYS
4
n
4
LYS
4
A
GLY
5
n
5
GLY
5
A
ALA
6
n
6
ALA
6
A
GLN
7
n
7
GLN
7
A
ALA
8
n
8
ALA
8
A
GLU
9
n
9
GLU
9
A
ARG
10
n
10
ARG
10
A
GLU
11
n
11
GLU
11
A
LEU
12
n
12
LEU
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
LEU
15
n
15
LEU
15
A
LEU
16
n
16
LEU
16
A
GLU
17
n
17
GLU
17
A
LYS
18
n
18
LYS
18
A
HIS
19
n
19
HIS
19
A
GLY
20
n
20
GLY
20
A
PHE
21
n
21
PHE
21
A
ALA
22
n
22
ALA
22
A
VAL
23
n
23
VAL
23
A
VAL
24
n
24
VAL
24
A
ARG
25
n
25
ARG
25
A
SER
26
n
26
SER
26
A
ALA
27
n
27
ALA
27
A
GLY
28
n
28
GLY
28
A
SER
29
n
29
SER
29
A
LYS
30
n
30
LYS
30
A
LYS
31
n
31
LYS
31
A
VAL
32
n
32
VAL
32
A
ASP
33
n
33
ASP
33
A
LEU
34
n
34
LEU
34
A
VAL
35
n
35
VAL
35
A
ALA
36
n
36
ALA
36
A
GLY
37
n
37
GLY
37
A
ASN
38
n
38
ASN
38
A
GLY
39
n
39
GLY
39
A
LYS
40
n
40
LYS
40
A
LYS
41
n
41
LYS
41
A
TYR
42
n
42
TYR
42
A
LEU
43
n
43
LEU
43
A
CYS
44
n
44
CYS
44
A
ILE
45
n
45
ILE
45
A
GLU
46
n
46
GLU
46
A
VAL
47
n
47
VAL
47
A
LYS
48
n
48
LYS
48
A
VAL
49
n
49
VAL
49
A
THR
50
n
50
THR
50
A
LYS
51
n
51
LYS
51
A
LYS
52
n
52
LYS
52
A
ASP
53
n
53
ASP
53
A
HIS
54
n
54
HIS
54
A
LEU
55
n
55
LEU
55
A
TYR
56
n
56
TYR
56
A
VAL
57
n
57
VAL
57
A
GLY
58
n
58
GLY
58
A
LYS
59
n
59
LYS
59
A
ARG
60
n
60
ARG
60
A
ASP
61
n
61
ASP
61
A
MET
62
n
62
MET
62
A
GLY
63
n
63
GLY
63
A
ARG
64
n
64
ARG
64
A
LEU
65
n
65
LEU
65
A
ILE
66
n
66
ILE
66
A
GLU
67
n
67
GLU
67
A
PHE
68
n
68
PHE
68
A
SER
69
n
69
SER
69
A
ARG
70
n
70
ARG
70
A
ARG
71
n
71
ARG
71
A
PHE
72
n
72
PHE
72
A
GLY
73
n
73
GLY
73
A
GLY
74
n
74
GLY
74
A
ILE
75
n
75
ILE
75
A
PRO
76
n
76
PRO
76
A
VAL
77
n
77
VAL
77
A
LEU
78
n
78
LEU
78
A
ALA
79
n
79
ALA
79
A
VAL
80
n
80
VAL
80
A
LYS
81
n
81
LYS
81
A
PHE
82
n
82
PHE
82
A
LEU
83
n
83
LEU
83
A
ASN
84
n
84
ASN
84
A
VAL
85
n
85
VAL
85
A
GLY
86
n
86
GLY
86
A
TRP
87
n
87
TRP
87
A
ARG
88
n
88
ARG
88
A
PHE
89
n
89
PHE
89
A
ILE
90
n
90
ILE
90
A
GLU
91
n
91
GLU
91
A
VAL
92
n
92
VAL
92
A
SER
93
n
93
SER
93
A
PRO
94
n
94
PRO
94
A
LYS
95
n
95
LYS
95
A
ILE
96
n
96
ILE
96
A
GLU
97
n
97
GLU
97
A
LYS
98
n
98
LYS
98
A
PHE
99
n
99
PHE
99
A
VAL
100
n
100
VAL
100
A
PHE
101
n
101
PHE
101
A
THR
102
n
102
THR
102
A
PRO
103
n
103
PRO
103
A
SER
104
n
104
SER
104
A
SER
105
n
105
SER
105
A
GLY
106
n
106
GLY
106
A
VAL
107
n
107
VAL
107
A
SER
108
n
108
SER
108
A
LEU
109
n
109
LEU
109
A
GLU
110
n
110
GLU
110
A
VAL
111
n
111
VAL
111
A
LEU
112
n
112
LEU
112
A
LEU
113
n
113
LEU
113
A
GLY
114
n
114
GLY
114
A
n
115
115
A
n
116
116
A
n
117
117
A
n
118
118
A
n
119
119
A
n
120
120
A
n
121
121
A
n
122
122
A
n
123
123
A
MET
1
n
1
MET
1
B
TYR
2
n
2
TYR
2
B
ARG
3
n
3
ARG
3
B
LYS
4
n
4
LYS
4
B
GLY
5
n
5
GLY
5
B
ALA
6
n
6
ALA
6
B
GLN
7
n
7
GLN
7
B
ALA
8
n
8
ALA
8
B
GLU
9
n
9
GLU
9
B
ARG
10
n
10
ARG
10
B
GLU
11
n
11
GLU
11
B
LEU
12
n
12
LEU
12
B
ILE
13
n
13
ILE
13
B
LYS
14
n
14
LYS
14
B
LEU
15
n
15
LEU
15
B
LEU
16
n
16
LEU
16
B
GLU
17
n
17
GLU
17
B
LYS
18
n
18
LYS
18
B
HIS
19
n
19
HIS
19
B
GLY
20
n
20
GLY
20
B
PHE
21
n
21
PHE
21
B
ALA
22
n
22
ALA
22
B
VAL
23
n
23
VAL
23
B
VAL
24
n
24
VAL
24
B
ARG
25
n
25
ARG
25
B
SER
26
n
26
SER
26
B
ALA
27
n
27
ALA
27
B
GLY
28
n
28
GLY
28
B
SER
29
n
29
SER
29
B
LYS
30
n
30
LYS
30
B
LYS
31
n
31
LYS
31
B
VAL
32
n
32
VAL
32
B
ASP
33
n
33
ASP
33
B
LEU
34
n
34
LEU
34
B
VAL
35
n
35
VAL
35
B
ALA
36
n
36
ALA
36
B
GLY
37
n
37
GLY
37
B
ASN
38
n
38
ASN
38
B
GLY
39
n
39
GLY
39
B
LYS
40
n
40
LYS
40
B
LYS
41
n
41
LYS
41
B
TYR
42
n
42
TYR
42
B
LEU
43
n
43
LEU
43
B
CYS
44
n
44
CYS
44
B
ILE
45
n
45
ILE
45
B
GLU
46
n
46
GLU
46
B
VAL
47
n
47
VAL
47
B
LYS
48
n
48
LYS
48
B
VAL
49
n
49
VAL
49
B
THR
50
n
50
THR
50
B
LYS
51
n
51
LYS
51
B
LYS
52
n
52
LYS
52
B
ASP
53
n
53
ASP
53
B
HIS
54
n
54
HIS
54
B
LEU
55
n
55
LEU
55
B
TYR
56
n
56
TYR
56
B
VAL
57
n
57
VAL
57
B
GLY
58
n
58
GLY
58
B
LYS
59
n
59
LYS
59
B
ARG
60
n
60
ARG
60
B
ASP
61
n
61
ASP
61
B
MET
62
n
62
MET
62
B
GLY
63
n
63
GLY
63
B
ARG
64
n
64
ARG
64
B
LEU
65
n
65
LEU
65
B
ILE
66
n
66
ILE
66
B
GLU
67
n
67
GLU
67
B
PHE
68
n
68
PHE
68
B
SER
69
n
69
SER
69
B
ARG
70
n
70
ARG
70
B
ARG
71
n
71
ARG
71
B
PHE
72
n
72
PHE
72
B
GLY
73
n
73
GLY
73
B
GLY
74
n
74
GLY
74
B
ILE
75
n
75
ILE
75
B
PRO
76
n
76
PRO
76
B
VAL
77
n
77
VAL
77
B
LEU
78
n
78
LEU
78
B
ALA
79
n
79
ALA
79
B
VAL
80
n
80
VAL
80
B
LYS
81
n
81
LYS
81
B
PHE
82
n
82
PHE
82
B
LEU
83
n
83
LEU
83
B
ASN
84
n
84
ASN
84
B
VAL
85
n
85
VAL
85
B
GLY
86
n
86
GLY
86
B
TRP
87
n
87
TRP
87
B
ARG
88
n
88
ARG
88
B
PHE
89
n
89
PHE
89
B
ILE
90
n
90
ILE
90
B
GLU
91
n
91
GLU
91
B
VAL
92
n
92
VAL
92
B
SER
93
n
93
SER
93
B
PRO
94
n
94
PRO
94
B
LYS
95
n
95
LYS
95
B
ILE
96
n
96
ILE
96
B
GLU
97
n
97
GLU
97
B
LYS
98
n
98
LYS
98
B
PHE
99
n
99
PHE
99
B
VAL
100
n
100
VAL
100
B
PHE
101
n
101
PHE
101
B
THR
102
n
102
THR
102
B
PRO
103
n
103
PRO
103
B
SER
104
n
104
SER
104
B
SER
105
n
105
SER
105
B
GLY
106
n
106
GLY
106
B
VAL
107
n
107
VAL
107
B
SER
108
n
108
SER
108
B
LEU
109
n
109
LEU
109
B
GLU
110
n
110
GLU
110
B
VAL
111
n
111
VAL
111
B
LEU
112
n
112
LEU
112
B
LEU
113
n
113
LEU
113
B
GLY
114
n
114
GLY
114
B
n
115
115
B
n
116
116
B
n
117
117
B
n
118
118
B
n
119
119
B
n
120
120
B
n
121
121
B
n
122
122
B
n
123
123
B
author_and_software_defined_assembly
PISA
2
dimeric
1960
-14
11960
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
24
A
N
VAL
24
A
O
VAL
35
A
O
VAL
35
A
N
ALA
36
A
N
ALA
36
A
O
LEU
43
A
O
LEU
43
A
O
TYR
42
A
O
TYR
42
A
N
ILE
75
A
N
ILE
75
A
O
PHE
82
A
O
PHE
82
A
N
GLY
86
A
N
GLY
86
A
N
VAL
57
A
N
VAL
57
A
O
PHE
99
A
O
PHE
99
B
N
VAL
24
B
N
VAL
24
B
O
VAL
35
B
O
VAL
35
B
N
ALA
36
B
N
ALA
36
B
O
LEU
43
B
O
LEU
43
B
O
TYR
42
B
O
TYR
42
B
N
ILE
75
B
N
ILE
75
B
O
PHE
82
B
O
PHE
82
B
N
GLY
86
B
N
GLY
86
B
N
VAL
57
B
N
VAL
57
B
O
PHE
99
B
O
PHE
99
1
A
ILE
115
A
ILE
115
1
Y
1
A
GLN
116
A
GLN
116
1
Y
1
A
LYS
117
A
LYS
117
1
Y
1
A
THR
118
A
THR
118
1
Y
1
A
LEU
119
A
LEU
119
1
Y
1
A
GLU
120
A
GLU
120
1
Y
1
A
GLY
121
A
GLY
121
1
Y
1
A
LYS
122
A
LYS
122
1
Y
1
A
SER
123
A
SER
123
1
Y
1
B
ILE
115
B
ILE
115
1
Y
1
B
GLN
116
B
GLN
116
1
Y
1
B
LYS
117
B
LYS
117
1
Y
1
B
THR
118
B
THR
118
1
Y
1
B
LEU
119
B
LEU
119
1
Y
1
B
GLU
120
B
GLU
120
1
Y
1
B
GLY
121
B
GLY
121
1
Y
1
B
LYS
122
B
LYS
122
1
Y
1
B
SER
123
B
SER
123
1
Y
1
A
LYS
31
-106.34
-110.85
1
A
LYS
40
-144.82
-19.52
1
A
VAL
85
-158.24
-32.40
1
A
LEU
113
-92.23
-84.44
1
B
TYR
2
91.91
101.45
1
B
LYS
31
-109.31
-117.29
1
B
LEU
83
-60.52
56.33
1
B
ASN
84
-175.09
-46.29
1
B
LEU
112
-62.15
6.68
0.2590000
0.2140000
2.16
41.0
1334
12955
11621
11.48
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
PDB ENTRY 1GEF functional dimer
Engh & Huber
0.35
0.27
5.0
0.32
0.19
2.16
41.0
157
1959
0
0
1802
23.8463
1.31928
0.006197
0.61779
0.3070000
0.2330000
2.24
120
1035
0.784
37.0
2.15
41.1
1IPI
94745
13043
1.0
1.0
0.0690000
1
6.42
7.3
88.9
0.2790000
2.16
2.26
2.7
6.0
79.5
refinement
CNS
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
CNS
CRYSTAL STRUCTURE OF THE ARCHAEAL HOLLIDAY JUNCTION RESOLVASE HJC FROM PYROCOCCUS FURIOSUS FORM II
1
N
N
1
N
N
2
N
N
2
N
N
chain A and B form functional dimer
A
GLY
5
A
GLY
5
HELX_P
A
HIS
19
A
HIS
19
1
1
15
A
GLY
58
A
GLY
58
HELX_P
A
GLY
73
A
GLY
73
1
2
16
A
SER
108
A
SER
108
HELX_P
A
GLY
114
A
GLY
114
1
3
7
B
GLY
5
B
GLY
5
HELX_P
B
HIS
19
B
HIS
19
1
4
15
B
GLY
58
B
GLY
58
HELX_P
B
GLY
73
B
GLY
73
1
5
16
B
THR
102
B
THR
102
HELX_P
B
GLY
106
B
GLY
106
5
6
5
B
GLU
110
B
GLU
110
HELX_P
B
GLY
114
B
GLY
114
5
7
5
HYDROLASE
nuclease fold, HJC, HYDROLASE
Q9V301_PYRFU
UNP
1
Q9V301
1
123
1IPI
1
123
Q9V301
A
1
1
123
1
123
1IPI
1
123
Q9V301
B
1
1
123
5
2
5
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ALA
22
A
ALA
22
A
ARG
25
A
ARG
25
A
LEU
34
A
LEU
34
A
GLY
37
A
GLY
37
A
TYR
42
A
TYR
42
A
THR
50
A
THR
50
A
ILE
75
A
ILE
75
A
PHE
82
A
PHE
82
A
GLY
86
A
GLY
86
A
GLU
91
A
GLU
91
A
LEU
55
A
LEU
55
A
VAL
57
A
VAL
57
A
PHE
99
A
PHE
99
A
PHE
101
A
PHE
101
B
ALA
22
B
ALA
22
B
ARG
25
B
ARG
25
B
LEU
34
B
LEU
34
B
GLY
37
B
GLY
37
B
TYR
42
B
TYR
42
B
THR
50
B
THR
50
B
ILE
75
B
ILE
75
B
PHE
82
B
PHE
82
B
GLY
86
B
GLY
86
B
GLU
91
B
GLU
91
B
LEU
55
B
LEU
55
B
VAL
57
B
VAL
57
B
PHE
99
B
PHE
99
B
PHE
101
B
PHE
101
170
P 65