0.032563 0.000000 0.006655 0.000000 0.023747 0.000000 0.000000 0.000000 0.016307 0.00000 0.00000 0.00000 Harata, K. Schubert, W.D. Muraki, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 101.55 90.00 30.710 42.110 62.590 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H7 N O3 129.114 n PYROGLUTAMIC ACID L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N C N 234 N C N 235 N O N 236 N C N 237 N O N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N N N 247 S C N 248 N C N 249 N O N 250 N C N 251 N C N 252 N C N 253 N O N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N N N 264 S C N 265 N C N 266 N O N 267 N C N 268 N O N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 R C N 282 N O N 283 N C N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C Y 299 N C Y 300 N C Y 301 N C Y 302 N N Y 303 N C Y 304 N C Y 305 N C Y 306 N C Y 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N C N 351 N C N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N doub N 287 N sing N 288 N sing N 289 N sing N 290 N sing Y 291 N doub Y 292 N sing Y 293 N sing N 294 N sing Y 295 N doub Y 296 N sing Y 297 N sing N 298 N sing Y 299 N sing Y 300 N doub N 301 N sing Y 302 N doub N 303 N sing Y 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N doub N 324 N sing Y 325 N doub N 326 N sing Y 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 57 1513 1517 10.1107/S090744490101232X 11679714 Structure of Urtica dioica agglutinin isolectin I: dimer formation mediated by two zinc ions bound at the sugar-binding site. 2001 10.2210/pdb1iqb/pdb pdb_00001iqb 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 286 1 AREA DETECTOR 1998-02-01 ENRAF-NONIUS FAST graphite SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS FR571 9408.387 AGGLUTININ ISOLECTIN I residues 1-89 Q1(PCA) 2 nat polymer 65.409 ZINC ION 2 syn non-polymer 18.015 water 87 nat water no yes (PCA)RCGSQGGGGTCPALWCCSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGAAVGNPPCGQDRCCSVHGWCGGGNDY CSGSKCQYRCSSS QRCGSQGGGGTCPALWCCSIWGWCGDSEPYCGRTCENKCWSGERSDHRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGS KCQYRCSSS A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n great nettle Urtica sample 3501 Urtica dioica 1 2.11 41.60 VAPOR DIFFUSION, HANGING DROP 6.5 PEG8000, zinc acetate, cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 software entity_poly pdbx_struct_mod_residue struct_conn struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Refinement description Database references Derived calculations Polymer sequence Data collection Database references Derived calculations Refinement description 1 0 2001-11-07 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 2 0 2019-12-25 2 1 2023-10-25 _software.name _entity_poly.pdbx_seq_one_letter_code_can _pdbx_struct_mod_residue.parent_comp_id _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBJ Y PDBJ 2001-07-15 REL REL ZN ZINC ION HOH water 1EHD PDB ENTRY 1EHD PDB experimental model ZN 90 2 ZN ZN 90 A ZN 91 2 ZN ZN 91 B HOH 101 3 HOH HOH 101 A HOH 102 3 HOH HOH 102 A HOH 104 3 HOH HOH 104 A HOH 105 3 HOH HOH 105 A HOH 106 3 HOH HOH 106 A HOH 107 3 HOH HOH 107 A HOH 108 3 HOH HOH 108 A HOH 112 3 HOH HOH 112 A HOH 113 3 HOH HOH 113 A HOH 115 3 HOH HOH 115 A HOH 117 3 HOH HOH 117 A HOH 119 3 HOH HOH 119 A HOH 120 3 HOH HOH 120 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 125 3 HOH HOH 125 A HOH 127 3 HOH HOH 127 A HOH 129 3 HOH HOH 129 A HOH 130 3 HOH HOH 130 A HOH 131 3 HOH HOH 131 A HOH 132 3 HOH HOH 132 A HOH 136 3 HOH HOH 136 A HOH 139 3 HOH HOH 139 A HOH 141 3 HOH HOH 141 A HOH 142 3 HOH HOH 142 A HOH 143 3 HOH HOH 143 A HOH 146 3 HOH HOH 146 A HOH 148 3 HOH HOH 148 A HOH 152 3 HOH HOH 152 A HOH 154 3 HOH HOH 154 A HOH 155 3 HOH HOH 155 A HOH 156 3 HOH HOH 156 A HOH 157 3 HOH HOH 157 A HOH 160 3 HOH HOH 160 A HOH 162 3 HOH HOH 162 A HOH 164 3 HOH HOH 164 A HOH 165 3 HOH HOH 165 A HOH 166 3 HOH HOH 166 A HOH 168 3 HOH HOH 168 A HOH 169 3 HOH HOH 169 A HOH 170 3 HOH HOH 170 A HOH 172 3 HOH HOH 172 A HOH 173 3 HOH HOH 173 A HOH 174 3 HOH HOH 174 A HOH 181 3 HOH HOH 181 A HOH 182 3 HOH HOH 182 A HOH 184 3 HOH HOH 184 A HOH 187 3 HOH HOH 187 A HOH 103 3 HOH HOH 103 B HOH 109 3 HOH HOH 109 B HOH 110 3 HOH HOH 110 B HOH 111 3 HOH HOH 111 B HOH 114 3 HOH HOH 114 B HOH 116 3 HOH HOH 116 B HOH 118 3 HOH HOH 118 B HOH 121 3 HOH HOH 121 B HOH 124 3 HOH HOH 124 B HOH 126 3 HOH HOH 126 B HOH 128 3 HOH HOH 128 B HOH 133 3 HOH HOH 133 B HOH 134 3 HOH HOH 134 B HOH 135 3 HOH HOH 135 B HOH 137 3 HOH HOH 137 B HOH 138 3 HOH HOH 138 B HOH 140 3 HOH HOH 140 B HOH 144 3 HOH HOH 144 B HOH 145 3 HOH HOH 145 B HOH 147 3 HOH HOH 147 B HOH 149 3 HOH HOH 149 B HOH 150 3 HOH HOH 150 B HOH 151 3 HOH HOH 151 B HOH 153 3 HOH HOH 153 B HOH 158 3 HOH HOH 158 B HOH 159 3 HOH HOH 159 B HOH 161 3 HOH HOH 161 B HOH 163 3 HOH HOH 163 B HOH 167 3 HOH HOH 167 B HOH 171 3 HOH HOH 171 B HOH 175 3 HOH HOH 175 B HOH 176 3 HOH HOH 176 B HOH 177 3 HOH HOH 177 B HOH 178 3 HOH HOH 178 B HOH 179 3 HOH HOH 179 B HOH 180 3 HOH HOH 180 B HOH 183 3 HOH HOH 183 B HOH 185 3 HOH HOH 185 B HOH 186 3 HOH HOH 186 B PGL 1 n 1 PCA 1 A ARG 2 n 2 ARG 2 A CYS 3 n 3 CYS 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A GLN 6 n 6 GLN 6 A GLY 7 n 7 GLY 7 A GLY 8 n 8 GLY 8 A GLY 9 n 9 GLY 9 A GLY 10 n 10 GLY 10 A THR 11 n 11 THR 11 A CYS 12 n 12 CYS 12 A PRO 13 n 13 PRO 13 A ALA 14 n 14 ALA 14 A LEU 15 n 15 LEU 15 A TRP 16 n 16 TRP 16 A CYS 17 n 17 CYS 17 A CYS 18 n 18 CYS 18 A SER 19 n 19 SER 19 A ILE 20 n 20 ILE 20 A TRP 21 n 21 TRP 21 A GLY 22 n 22 GLY 22 A TRP 23 n 23 TRP 23 A CYS 24 n 24 CYS 24 A GLY 25 n 25 GLY 25 A ASP 26 n 26 ASP 26 A SER 27 n 27 SER 27 A GLU 28 n 28 GLU 28 A PRO 29 n 29 PRO 29 A TYR 30 n 30 TYR 30 A CYS 31 n 31 CYS 31 A GLY 32 n 32 GLY 32 A ARG 33 n 33 ARG 33 A THR 34 n 34 THR 34 A CYS 35 n 35 CYS 35 A GLU 36 n 36 GLU 36 A ASN 37 n 37 ASN 37 A LYS 38 n 38 LYS 38 A CYS 39 n 39 CYS 39 A TRP 40 n 40 TRP 40 A SER 41 n 41 SER 41 A GLY 42 n 42 GLY 42 A GLU 43 n 43 GLU 43 A ARG 44 n 44 ARG 44 A SER 45 n 45 SER 45 A ASP 46 n 46 ASP 46 A HIS 47 n 47 HIS 47 A ARG 48 n 48 ARG 48 A CYS 49 n 49 CYS 49 A GLY 50 n 50 GLY 50 A ALA 51 n 51 ALA 51 A ALA 52 n 52 ALA 52 A VAL 53 n 53 VAL 53 A GLY 54 n 54 GLY 54 A ASN 55 n 55 ASN 55 A PRO 56 n 56 PRO 56 A PRO 57 n 57 PRO 57 A CYS 58 n 58 CYS 58 A GLY 59 n 59 GLY 59 A GLN 60 n 60 GLN 60 A ASP 61 n 61 ASP 61 A ARG 62 n 62 ARG 62 A CYS 63 n 63 CYS 63 A CYS 64 n 64 CYS 64 A SER 65 n 65 SER 65 A VAL 66 n 66 VAL 66 A HIS 67 n 67 HIS 67 A GLY 68 n 68 GLY 68 A TRP 69 n 69 TRP 69 A CYS 70 n 70 CYS 70 A GLY 71 n 71 GLY 71 A GLY 72 n 72 GLY 72 A GLY 73 n 73 GLY 73 A ASN 74 n 74 ASN 74 A ASP 75 n 75 ASP 75 A TYR 76 n 76 TYR 76 A CYS 77 n 77 CYS 77 A SER 78 n 78 SER 78 A GLY 79 n 79 GLY 79 A SER 80 n 80 SER 80 A LYS 81 n 81 LYS 81 A CYS 82 n 82 CYS 82 A GLN 83 n 83 GLN 83 A TYR 84 n 84 TYR 84 A ARG 85 n 85 ARG 85 A CYS 86 n 86 CYS 86 A SER 87 n 87 SER 87 A SER 88 n 88 SER 88 A SER 89 n 89 SER 89 A PGL 1 n 1 PCA 1 B ARG 2 n 2 ARG 2 B CYS 3 n 3 CYS 3 B GLY 4 n 4 GLY 4 B SER 5 n 5 SER 5 B GLN 6 n 6 GLN 6 B GLY 7 n 7 GLY 7 B GLY 8 n 8 GLY 8 B GLY 9 n 9 GLY 9 B GLY 10 n 10 GLY 10 B THR 11 n 11 THR 11 B CYS 12 n 12 CYS 12 B PRO 13 n 13 PRO 13 B ALA 14 n 14 ALA 14 B LEU 15 n 15 LEU 15 B TRP 16 n 16 TRP 16 B CYS 17 n 17 CYS 17 B CYS 18 n 18 CYS 18 B SER 19 n 19 SER 19 B ILE 20 n 20 ILE 20 B TRP 21 n 21 TRP 21 B GLY 22 n 22 GLY 22 B TRP 23 n 23 TRP 23 B CYS 24 n 24 CYS 24 B GLY 25 n 25 GLY 25 B ASP 26 n 26 ASP 26 B SER 27 n 27 SER 27 B GLU 28 n 28 GLU 28 B PRO 29 n 29 PRO 29 B TYR 30 n 30 TYR 30 B CYS 31 n 31 CYS 31 B GLY 32 n 32 GLY 32 B ARG 33 n 33 ARG 33 B THR 34 n 34 THR 34 B CYS 35 n 35 CYS 35 B GLU 36 n 36 GLU 36 B ASN 37 n 37 ASN 37 B LYS 38 n 38 LYS 38 B CYS 39 n 39 CYS 39 B TRP 40 n 40 TRP 40 B SER 41 n 41 SER 41 B GLY 42 n 42 GLY 42 B GLU 43 n 43 GLU 43 B ARG 44 n 44 ARG 44 B SER 45 n 45 SER 45 B ASP 46 n 46 ASP 46 B HIS 47 n 47 HIS 47 B ARG 48 n 48 ARG 48 B CYS 49 n 49 CYS 49 B GLY 50 n 50 GLY 50 B ALA 51 n 51 ALA 51 B ALA 52 n 52 ALA 52 B VAL 53 n 53 VAL 53 B GLY 54 n 54 GLY 54 B ASN 55 n 55 ASN 55 B PRO 56 n 56 PRO 56 B PRO 57 n 57 PRO 57 B CYS 58 n 58 CYS 58 B GLY 59 n 59 GLY 59 B GLN 60 n 60 GLN 60 B ASP 61 n 61 ASP 61 B ARG 62 n 62 ARG 62 B CYS 63 n 63 CYS 63 B CYS 64 n 64 CYS 64 B SER 65 n 65 SER 65 B VAL 66 n 66 VAL 66 B HIS 67 n 67 HIS 67 B GLY 68 n 68 GLY 68 B TRP 69 n 69 TRP 69 B CYS 70 n 70 CYS 70 B GLY 71 n 71 GLY 71 B GLY 72 n 72 GLY 72 B GLY 73 n 73 GLY 73 B ASN 74 n 74 ASN 74 B ASP 75 n 75 ASP 75 B TYR 76 n 76 TYR 76 B CYS 77 n 77 CYS 77 B SER 78 n 78 SER 78 B GLY 79 n 79 GLY 79 B SER 80 n 80 SER 80 B LYS 81 n 81 LYS 81 B CYS 82 n 82 CYS 82 B GLN 83 n 83 GLN 83 B TYR 84 n 84 TYR 84 B ARG 85 n 85 ARG 85 B CYS 86 n 86 CYS 86 B SER 87 n 87 SER 87 B SER 88 n 88 SER 88 B SER 89 n 89 SER 89 B author_and_software_defined_assembly PISA 2 dimeric 800 -69 8870 A HIS 47 A NE2 HIS 47 1_555 A ZN 90 C ZN ZN 1_555 B HIS 67 B ND1 HIS 67 1_555 121.3 A HIS 47 A NE2 HIS 47 1_555 A ZN 90 C ZN ZN 1_555 B HOH 118 F O HOH 1_555 106.0 B HIS 67 B ND1 HIS 67 1_555 A ZN 90 C ZN ZN 1_555 B HOH 118 F O HOH 1_555 98.2 A ASP 75 A OD1 ASP 75 1_555 B ZN 91 D ZN ZN 1_555 A ASP 75 A OD2 ASP 75 1_555 50.4 A ASP 75 A OD1 ASP 75 1_555 B ZN 91 D ZN ZN 1_555 B HIS 47 B NE2 HIS 47 1_555 101.2 A ASP 75 A OD2 ASP 75 1_555 B ZN 91 D ZN ZN 1_555 B HIS 47 B NE2 HIS 47 1_555 146.6 A PCA 1 PYROGLUTAMIC ACID A PCA 1 GLN B PCA 1 PYROGLUTAMIC ACID B PCA 1 GLN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 25 A N GLY 25 A O CYS 17 A O CYS 17 A O CYS 18 A O CYS 18 A N GLU 36 A N GLU 36 A O GLY 71 A O GLY 71 A N CYS 63 A N CYS 63 A O CYS 64 A O CYS 64 A N GLN 83 A N GLN 83 B N GLY 25 B N GLY 25 B O CYS 17 B O CYS 17 B O CYS 18 B O CYS 18 B N GLU 36 B N GLU 36 B O GLY 71 B O GLY 71 B N CYS 63 B N CYS 63 B O CYS 64 B O CYS 64 B N GLN 83 B N GLN 83 1 7.21 0.80 106.30 113.51 A A A CD1 CG CD2 TRP TRP TRP 16 16 16 N 1 -6.53 0.80 107.30 100.77 A A A CE2 CD2 CG TRP TRP TRP 16 16 16 N 1 7.67 0.80 106.30 113.97 A A A CD1 CG CD2 TRP TRP TRP 21 21 21 N 1 -6.30 0.80 107.30 101.00 A A A CE2 CD2 CG TRP TRP TRP 21 21 21 N 1 7.60 0.80 106.30 113.90 A A A CD1 CG CD2 TRP TRP TRP 23 23 23 N 1 -6.11 1.00 110.10 103.99 A A A CG CD1 NE1 TRP TRP TRP 23 23 23 N 1 -6.18 0.80 107.30 101.12 A A A CE2 CD2 CG TRP TRP TRP 23 23 23 N 1 6.26 0.80 106.30 112.56 A A A CD1 CG CD2 TRP TRP TRP 40 40 40 N 1 -5.64 0.80 107.30 101.66 A A A CE2 CD2 CG TRP TRP TRP 40 40 40 N 1 3.47 0.50 120.30 123.77 A A A NE CZ NH1 ARG ARG ARG 44 44 44 N 1 7.65 0.80 106.30 113.95 A A A CD1 CG CD2 TRP TRP TRP 69 69 69 N 1 -6.33 1.00 110.10 103.77 A A A CG CD1 NE1 TRP TRP TRP 69 69 69 N 1 -6.15 0.80 107.30 101.15 A A A CE2 CD2 CG TRP TRP TRP 69 69 69 N 1 7.17 0.80 106.30 113.47 B B B CD1 CG CD2 TRP TRP TRP 16 16 16 N 1 -6.24 0.80 107.30 101.06 B B B CE2 CD2 CG TRP TRP TRP 16 16 16 N 1 5.78 0.90 133.90 139.68 B B B CG CD2 CE3 TRP TRP TRP 16 16 16 N 1 6.58 0.80 106.30 112.88 B B B CD1 CG CD2 TRP TRP TRP 21 21 21 N 1 -6.19 0.80 107.30 101.11 B B B CE2 CD2 CG TRP TRP TRP 21 21 21 N 1 5.43 0.80 106.30 111.73 B B B CD1 CG CD2 TRP TRP TRP 23 23 23 N 1 -5.50 0.80 107.30 101.80 B B B CE2 CD2 CG TRP TRP TRP 23 23 23 N 1 5.24 0.80 106.30 111.54 B B B CD1 CG CD2 TRP TRP TRP 40 40 40 N 1 -5.43 0.80 107.30 101.87 B B B CE2 CD2 CG TRP TRP TRP 40 40 40 N 1 -5.10 0.50 120.30 115.20 B B B NE CZ NH2 ARG ARG ARG 48 48 48 N 1 5.60 0.80 106.30 111.90 B B B CD1 CG CD2 TRP TRP TRP 69 69 69 N 1 -5.61 0.80 107.30 101.69 B B B CE2 CD2 CG TRP TRP TRP 69 69 69 N 1 6.72 1.10 114.20 120.92 B B B CA CB SG CYS CYS CYS 77 77 77 N 1 -20.65 2.70 111.00 90.35 B B B N CA C SER SER SER 89 89 89 N 1 B B NE2 CD2 HIS HIS 67 67 -0.071 0.011 1.373 1.302 N 1 A THR 34 -89.98 30.55 1 A SER 87 -150.02 -38.52 1 B THR 34 -106.48 41.24 1 B SER 80 72.11 -36.39 1 B SER 87 -154.34 87.76 1 B SER 88 -170.12 -43.71 27.5 0.26 0.205 1.90 8.0 1355 12339 10402 13.0 RANDOM 1 Isotropic 2.0 MOLECULAR REPLACEMENT PDB ENTRY 1EHD Engh & Huber 1.90 8.0 87 1381 2 0 1292 0.016 3.32 0.387 0.305 1.93 38 328 84.3 1.73 25.1 1IQB 16600 14774 0 0 0.069 1 3.2 89.0 0.294 1.73 1.76 25.0 data collection MADNESS data reduction MERGF model building X-PLOR refinement X-PLOR 3.1 data reduction MADNESS data scaling MERGEF (K.HARATA) phasing X-PLOR Crystal Structure of Urtica dioica Agglutinin Isolectin I 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A CYS 3 A CYS 3 HELX_P A GLY 8 A GLY 8 1 1 6 A CYS 12 A CYS 12 HELX_P A TRP 16 A TRP 16 5 2 5 A SER 27 A SER 27 HELX_P A GLY 32 A GLY 32 1 3 6 A CYS 39 A CYS 39 HELX_P A GLU 43 A GLU 43 5 4 5 A GLY 50 A GLY 50 HELX_P A GLY 54 A GLY 54 5 5 5 A GLY 73 A GLY 73 HELX_P A SER 78 A SER 78 1 6 6 B CYS 3 B CYS 3 HELX_P B GLY 8 B GLY 8 1 7 6 B CYS 12 B CYS 12 HELX_P B TRP 16 B TRP 16 5 8 5 B SER 27 B SER 27 HELX_P B GLY 32 B GLY 32 1 9 6 B CYS 39 B CYS 39 HELX_P B GLU 43 B GLU 43 5 10 5 B GLY 50 B GLY 50 HELX_P B GLY 54 B GLY 54 5 11 5 B GLY 73 B GLY 73 HELX_P B SER 78 B SER 78 1 12 6 disulf 2.012 A CYS 3 A SG CYS 3 1_555 A CYS 18 A SG CYS 18 1_555 disulf 2.040 A CYS 12 A SG CYS 12 1_555 A CYS 24 A SG CYS 24 1_555 disulf 1.945 A CYS 17 A SG CYS 17 1_555 A CYS 31 A SG CYS 31 1_555 disulf 1.990 A CYS 35 A SG CYS 35 1_555 A CYS 39 A SG CYS 39 1_555 disulf 2.004 A CYS 49 A SG CYS 49 1_555 A CYS 64 A SG CYS 64 1_555 disulf 2.031 A CYS 58 A SG CYS 58 1_555 A CYS 70 A SG CYS 70 1_555 disulf 2.037 A CYS 63 A SG CYS 63 1_555 A CYS 77 A SG CYS 77 1_555 disulf 2.056 A CYS 82 A SG CYS 82 1_555 A CYS 86 A SG CYS 86 1_555 disulf 2.015 B CYS 3 B SG CYS 3 1_555 B CYS 18 B SG CYS 18 1_555 disulf 2.057 B CYS 12 B SG CYS 12 1_555 B CYS 24 B SG CYS 24 1_555 disulf 1.995 B CYS 17 B SG CYS 17 1_555 B CYS 31 B SG CYS 31 1_555 disulf 2.020 B CYS 35 B SG CYS 35 1_555 B CYS 39 B SG CYS 39 1_555 disulf 2.011 B CYS 49 B SG CYS 49 1_555 B CYS 64 B SG CYS 64 1_555 disulf 2.039 B CYS 58 B SG CYS 58 1_555 B CYS 70 B SG CYS 70 1_555 disulf 2.014 B CYS 63 B SG CYS 63 1_555 B CYS 77 B SG CYS 77 1_555 disulf 2.031 B CYS 82 B SG CYS 82 1_555 B CYS 86 B SG CYS 86 1_555 covale 1.307 both A PCA 1 A C PCA 1 1_555 A ARG 2 A N ARG 2 1_555 covale 1.326 both B PCA 1 B C PCA 1 1_555 B ARG 2 B N ARG 2 1_555 metalc 2.067 A HIS 47 A NE2 HIS 47 1_555 A ZN 90 C ZN ZN 1_555 metalc 2.113 A ASP 75 A OD1 ASP 75 1_555 B ZN 91 D ZN ZN 1_555 metalc 2.740 A ASP 75 A OD2 ASP 75 1_555 B ZN 91 D ZN ZN 1_555 metalc 2.402 A ZN 90 C ZN ZN 1_555 B HIS 67 B ND1 HIS 67 1_555 metalc 2.506 A ZN 90 C ZN ZN 1_555 B HOH 118 F O HOH 1_555 metalc 2.249 B HIS 47 B NE2 HIS 47 1_555 B ZN 91 D ZN ZN 1_555 SUGAR BINDING PROTEIN TWO HOMOLOGOUS HEVEIN-LIKE DOMAINS, ZINC COMPLEX, HOMO-DIMER, SUGAR BINDING PROTEIN AGI_URTDI UNP 1 25 P11218 25 112 1IQB 1 89 P11218 A 1 1 89 25 112 1IQB 1 89 P11218 B 1 1 89 3 3 3 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A CYS 24 A CYS 24 A GLY 25 A GLY 25 A CYS 17 A CYS 17 A SER 19 A SER 19 A CYS 35 A CYS 35 A ASN 37 A ASN 37 A CYS 70 A CYS 70 A GLY 72 A GLY 72 A ARG 62 A ARG 62 A SER 65 A SER 65 A CYS 82 A CYS 82 A TYR 84 A TYR 84 B CYS 24 B CYS 24 B GLY 25 B GLY 25 B CYS 17 B CYS 17 B SER 19 B SER 19 B CYS 35 B CYS 35 B ASN 37 B ASN 37 B CYS 70 B CYS 70 B GLY 71 B GLY 71 B CYS 63 B CYS 63 B SER 65 B SER 65 B CYS 82 B CYS 82 B TYR 84 B TYR 84 BINDING SITE FOR RESIDUE ZN A 90 A ZN 90 Software 4 BINDING SITE FOR RESIDUE ZN B 91 B ZN 91 Software 2 A SER 45 A SER 45 4 1_555 A HIS 47 A HIS 47 4 1_555 B HIS 67 B HIS 67 4 1_555 B HOH 118 F HOH 4 1_555 A ASP 75 A ASP 75 2 1_555 B HIS 47 B HIS 47 2 1_555 4 P 1 21 1