0.013833 0.000000 0.000000 0.000000 0.012814 0.000000 0.000000 0.000000 0.017658 0.00000 0.00000 0.00000 Shiromizu, I. Matsusue, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 72.290 78.040 56.630 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C28 H31 Cl N4 O5 S 571.088 (2R)-4-[(6-CHLORO-2-NAPHTHALENYL)SULFONYL]-6-OXO-1-[[1-(4-PYRIDINYL)-4-PIPERIDINYL]METHYL]-2-PIPERAZINECARBOXYLIC ACID ETHYL ESTER non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 S C N 161 N C N 162 N O N 163 S C N 164 N C N 165 N C N 166 N C N 167 N O N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 N C N 186 N C N 187 N C N 188 N C N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 S C N 205 N C N 206 N O N 207 N C N 208 N C N 209 N C N 210 N C N 211 N N N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N N N 229 S C N 230 N C N 231 N O N 232 N C N 233 N C N 234 N S N 235 N C N 236 N O N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 S C N 273 N C N 274 N O N 275 N C N 276 N C N 277 N C N 278 N O N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C N 293 N O N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 R C N 307 N O N 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N N Y 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C N 357 N O N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C N 375 N C N 376 N C N 377 N O N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H Y 389 N C Y 390 N C Y 391 N C Y 392 N C Y 393 N C Y 394 N C N 395 N CL Y 396 N C Y 397 N C Y 398 N C Y 399 N C N 400 N S N 401 N O N 402 R C N 403 N C N 404 N O N 405 N C N 406 N C N 407 N O N 408 N C N 409 N N N 410 N C N 411 N O N 412 N C N 413 N N N 414 N O N 415 N C Y 416 N C N 417 N N Y 418 N C Y 419 N C N 420 N C Y 421 N C N 422 N C N 423 N C N 424 N C Y 425 N N Y 426 N C N 427 N C N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing Y 374 N sing Y 375 N doub N 376 N sing Y 377 N doub N 378 N sing Y 379 N doub Y 380 N sing Y 381 N sing Y 382 N sing N 383 N sing N 384 N sing Y 385 N sing N 386 N sing Y 387 N doub N 388 N sing Y 389 N doub N 390 N sing Y 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N doub N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N doub N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing Y 422 N doub Y 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing Y 428 N sing Y 429 N doub N 430 N sing N 431 N sing N 432 N sing N 433 N sing Y 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing Y 444 N doub N 445 N sing N 446 N sing N 447 N sing To be Published 0353 Factor Xa Specific Inhibitor that Induces the Novel Binding Model in Complex with Human Fxa UK J.Mol.Biol. JMOBAK 0070 0022-2836 232 947 966 10.1006/jmbi.1993.1441 Structure of Human Des(1-45) Factor Xa at 2.2 A Resolution 1993 US J.Biol.Chem. JBCHA3 0071 0021-9258 271 29988 29992 10.1074/jbc.271.47.29988 X-Ray Structure of Active Site-Inhibited Clotting Factor Xa. Implications for Drug Design and Substrate Recognition 1996 US J.Biol.Chem. JBCHA3 0071 0021-9258 271 16614 16620 10.1074/jbc.271.28.16614 Autoproteolysis or Plasmin-Mediated Cleavage of Factor Xaalpha Exposes a Plasminogen Binding Site and Inhibits Coagulation 1996 10.2210/pdb1iqf/pdb pdb_00001iqf 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 mirrors IMAGE PLATE 1999-02-18 RIGAKU RAXIS IV yale mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 26604.297 coagulation Factor Xa 3.4.21.6 heavy chain, catalytic domain (residues 235-469) 1 nat polymer 10533.713 coagulation Factor Xa 3.4.21.6 light chain, epidermal growth factor like domain (residues 84-179) 1 nat polymer 40.078 CALCIUM ION 1 syn non-polymer 571.088 (2R)-4-[(6-CHLORO-2-NAPHTHALENYL)SULFONYL]-6-OXO-1-[[1-(4-PYRIDINYL)-4-PIPERIDINYL]METHYL]-2-PIPERAZINECARBOXYLIC ACID ETHYL ESTER 1 syn non-polymer no no IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTR IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTR A polypeptide(L) no no YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKA CIPTGPYPCGKQTLER YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKA CIPTGPYPCGKQTLER L polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample 9606 Homo sapiens human Homo sample 9606 Homo sapiens 1 2.15 42.79 VAPOR DIFFUSION, SITTING DROP 7.2 PEG1500, calcium chloride, M55165, tris-HCl, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 software chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations 1 0 2003-09-23 1 1 2007-11-21 1 2 2011-07-13 1 3 2017-10-04 1 4 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1IOE contains the same protein complexed with M55532 1IQE contains the same protein complexed with M55590 1IQG contains the same protein complexed with M55159 1IQH contains the same protein complexed with M55143 1IQI contains the same protein complexed with M55125 1IQJ contains the same protein complexed with M55124 1IQK contains the same protein complexed with M55113 1IQL contains the same protein complexed with M54476 1IQM contains the same protein complexed with M54471 1IQN contains the same protein complexed with M55192 PDBJ Y PDBJ 2001-07-23 REL CA CALCIUM ION XMD (2R)-4-[(6-CHLORO-2-NAPHTHALENYL)SULFONYL]-6-OXO-1-[[1-(4-PYRIDINYL)-4-PIPERIDINYL]METHYL]-2-PIPERAZINECARBOXYLIC ACID ETHYL ESTER CA 301 3 CA CA 301 A XMD 401 4 XMD XMD 401 A ILE 16 n 1 ILE 16 A VAL 17 n 2 VAL 17 A GLY 18 n 3 GLY 18 A GLY 19 n 4 GLY 19 A GLN 20 n 5 GLN 20 A GLU 21 n 6 GLU 21 A CYS 22 n 7 CYS 22 A LYS 23 n 8 LYS 23 A ASP 24 n 9 ASP 24 A GLY 25 n 10 GLY 25 A GLU 26 n 11 GLU 26 A CYS 27 n 12 CYS 27 A PRO 28 n 13 PRO 28 A TRP 29 n 14 TRP 29 A GLN 30 n 15 GLN 30 A ALA 31 n 16 ALA 31 A LEU 32 n 17 LEU 32 A LEU 33 n 18 LEU 33 A ILE 34 n 19 ILE 34 A ASN 35 n 20 ASN 35 A GLU 36 n 21 GLU 36 A GLU 37 n 22 GLU 37 A ASN 38 n 23 ASN 38 A GLU 39 n 24 GLU 39 A GLY 40 n 25 GLY 40 A PHE 41 n 26 PHE 41 A CYS 42 n 27 CYS 42 A GLY 43 n 28 GLY 43 A GLY 44 n 29 GLY 44 A THR 45 n 30 THR 45 A ILE 46 n 31 ILE 46 A LEU 47 n 32 LEU 47 A SER 48 n 33 SER 48 A GLU 49 n 34 GLU 49 A PHE 50 n 35 PHE 50 A TYR 51 n 36 TYR 51 A ILE 52 n 37 ILE 52 A LEU 53 n 38 LEU 53 A THR 54 n 39 THR 54 A ALA 55 n 40 ALA 55 A ALA 56 n 41 ALA 56 A HIS 57 n 42 HIS 57 A CYS 58 n 43 CYS 58 A LEU 59 n 44 LEU 59 A TYR 60 n 45 TYR 60 A GLN 61 n 46 GLN 61 A ALA 61 n 47 A ALA 61 A LYS 62 n 48 LYS 62 A ARG 63 n 49 ARG 63 A PHE 64 n 50 PHE 64 A LYS 65 n 51 LYS 65 A VAL 66 n 52 VAL 66 A ARG 67 n 53 ARG 67 A VAL 68 n 54 VAL 68 A GLY 69 n 55 GLY 69 A ASP 70 n 56 ASP 70 A ARG 71 n 57 ARG 71 A ASN 72 n 58 ASN 72 A THR 73 n 59 THR 73 A GLU 74 n 60 GLU 74 A GLN 75 n 61 GLN 75 A GLU 76 n 62 GLU 76 A GLU 77 n 63 GLU 77 A GLY 78 n 64 GLY 78 A GLY 79 n 65 GLY 79 A GLU 80 n 66 GLU 80 A ALA 81 n 67 ALA 81 A VAL 82 n 68 VAL 82 A HIS 83 n 69 HIS 83 A GLU 84 n 70 GLU 84 A VAL 85 n 71 VAL 85 A GLU 86 n 72 GLU 86 A VAL 87 n 73 VAL 87 A VAL 88 n 74 VAL 88 A ILE 89 n 75 ILE 89 A LYS 90 n 76 LYS 90 A HIS 91 n 77 HIS 91 A ASN 92 n 78 ASN 92 A ARG 93 n 79 ARG 93 A PHE 94 n 80 PHE 94 A THR 95 n 81 THR 95 A LYS 96 n 82 LYS 96 A GLU 97 n 83 GLU 97 A THR 98 n 84 THR 98 A TYR 99 n 85 TYR 99 A ASP 100 n 86 ASP 100 A PHE 101 n 87 PHE 101 A ASP 102 n 88 ASP 102 A ILE 103 n 89 ILE 103 A ALA 104 n 90 ALA 104 A VAL 105 n 91 VAL 105 A LEU 106 n 92 LEU 106 A ARG 107 n 93 ARG 107 A LEU 108 n 94 LEU 108 A LYS 109 n 95 LYS 109 A THR 110 n 96 THR 110 A PRO 111 n 97 PRO 111 A ILE 112 n 98 ILE 112 A THR 113 n 99 THR 113 A PHE 114 n 100 PHE 114 A ARG 115 n 101 ARG 115 A MET 116 n 102 MET 116 A ASN 117 n 103 ASN 117 A VAL 118 n 104 VAL 118 A ALA 119 n 105 ALA 119 A PRO 120 n 106 PRO 120 A ALA 121 n 107 ALA 121 A CYS 122 n 108 CYS 122 A LEU 123 n 109 LEU 123 A PRO 124 n 110 PRO 124 A GLU 124 n 111 A GLU 124 A ARG 125 n 112 ARG 125 A ASP 126 n 113 ASP 126 A TRP 127 n 114 TRP 127 A ALA 128 n 115 ALA 128 A GLU 129 n 116 GLU 129 A SER 130 n 117 SER 130 A THR 131 n 118 THR 131 A LEU 131 n 119 A LEU 131 A MET 131 n 120 B MET 131 A THR 132 n 121 THR 132 A GLN 133 n 122 GLN 133 A LYS 134 n 123 LYS 134 A THR 135 n 124 THR 135 A GLY 136 n 125 GLY 136 A ILE 137 n 126 ILE 137 A VAL 138 n 127 VAL 138 A SER 139 n 128 SER 139 A GLY 140 n 129 GLY 140 A PHE 141 n 130 PHE 141 A GLY 142 n 131 GLY 142 A ARG 143 n 132 ARG 143 A THR 144 n 133 THR 144 A HIS 145 n 134 HIS 145 A GLU 147 n 135 GLU 147 A LYS 148 n 136 LYS 148 A GLY 149 n 137 GLY 149 A ARG 150 n 138 ARG 150 A GLN 151 n 139 GLN 151 A SER 152 n 140 SER 152 A THR 153 n 141 THR 153 A ARG 154 n 142 ARG 154 A LEU 155 n 143 LEU 155 A LYS 156 n 144 LYS 156 A MET 157 n 145 MET 157 A LEU 158 n 146 LEU 158 A GLU 159 n 147 GLU 159 A VAL 160 n 148 VAL 160 A PRO 161 n 149 PRO 161 A TYR 162 n 150 TYR 162 A VAL 163 n 151 VAL 163 A ASP 164 n 152 ASP 164 A ARG 165 n 153 ARG 165 A ASN 166 n 154 ASN 166 A SER 167 n 155 SER 167 A CYS 168 n 156 CYS 168 A LYS 169 n 157 LYS 169 A LEU 170 n 158 LEU 170 A SER 171 n 159 SER 171 A SER 172 n 160 SER 172 A SER 173 n 161 SER 173 A PHE 174 n 162 PHE 174 A ILE 175 n 163 ILE 175 A ILE 176 n 164 ILE 176 A THR 177 n 165 THR 177 A GLN 178 n 166 GLN 178 A ASN 179 n 167 ASN 179 A MET 180 n 168 MET 180 A PHE 181 n 169 PHE 181 A CYS 182 n 170 CYS 182 A ALA 183 n 171 ALA 183 A GLY 184 n 172 GLY 184 A TYR 185 n 173 TYR 185 A ASP 185 n 174 A ASP 185 A THR 185 n 175 B THR 185 A LYS 186 n 176 LYS 186 A GLN 187 n 177 GLN 187 A GLU 188 n 178 GLU 188 A ASP 189 n 179 ASP 189 A ALA 190 n 180 ALA 190 A CYS 191 n 181 CYS 191 A GLN 192 n 182 GLN 192 A GLY 193 n 183 GLY 193 A ASP 194 n 184 ASP 194 A SER 195 n 185 SER 195 A GLY 196 n 186 GLY 196 A GLY 197 n 187 GLY 197 A PRO 198 n 188 PRO 198 A HIS 199 n 189 HIS 199 A VAL 200 n 190 VAL 200 A THR 201 n 191 THR 201 A ARG 202 n 192 ARG 202 A PHE 203 n 193 PHE 203 A LYS 204 n 194 LYS 204 A ASP 205 n 195 ASP 205 A THR 206 n 196 THR 206 A TYR 207 n 197 TYR 207 A PHE 208 n 198 PHE 208 A VAL 209 n 199 VAL 209 A THR 210 n 200 THR 210 A GLY 211 n 201 GLY 211 A ILE 212 n 202 ILE 212 A VAL 213 n 203 VAL 213 A SER 214 n 204 SER 214 A TRP 215 n 205 TRP 215 A GLY 216 n 206 GLY 216 A GLU 217 n 207 GLU 217 A GLY 218 n 208 GLY 218 A CYS 220 n 209 CYS 220 A ALA 221 n 210 ALA 221 A ARG 222 n 211 ARG 222 A LYS 223 n 212 LYS 223 A GLY 223 n 213 A GLY 223 A LYS 224 n 214 LYS 224 A TYR 225 n 215 TYR 225 A GLY 226 n 216 GLY 226 A ILE 227 n 217 ILE 227 A TYR 228 n 218 TYR 228 A THR 229 n 219 THR 229 A LYS 230 n 220 LYS 230 A VAL 231 n 221 VAL 231 A THR 232 n 222 THR 232 A ALA 233 n 223 ALA 233 A PHE 234 n 224 PHE 234 A LEU 235 n 225 LEU 235 A LYS 236 n 226 LYS 236 A TRP 237 n 227 TRP 237 A ILE 238 n 228 ILE 238 A ASP 239 n 229 ASP 239 A ARG 240 n 230 ARG 240 A SER 241 n 231 SER 241 A MET 242 n 232 MET 242 A LYS 243 n 233 LYS 243 A THR 244 n 234 THR 244 A ARG 245 n 235 ARG 245 A n 1 44 L n 2 45 L n 3 46 L n 4 47 L n 5 48 L n 6 49 L n 7 50 L n 8 51 L n 9 52 L n 10 53 L n 11 54 L n 12 55 L n 13 56 L n 14 57 L n 15 58 L n 16 59 L n 17 60 L n 18 61 L n 19 62 L n 20 63 L n 21 64 L n 22 65 L n 23 66 L n 24 67 L n 25 68 L n 26 69 L n 27 70 L n 28 71 L n 29 72 L n 30 73 L n 31 74 L n 32 75 L n 33 76 L n 34 77 L n 35 78 L n 36 79 L n 37 80 L n 38 81 L n 39 82 L n 40 83 L n 41 84 L n 42 85 L n 43 86 L LYS 87 n 44 LYS 87 L LEU 88 n 45 LEU 88 L CYS 89 n 46 CYS 89 L SER 90 n 47 SER 90 L LEU 91 n 48 LEU 91 L ASP 92 n 49 ASP 92 L ASN 93 n 50 ASN 93 L GLY 94 n 51 GLY 94 L ASP 95 n 52 ASP 95 L CYS 96 n 53 CYS 96 L ASP 97 n 54 ASP 97 L GLN 98 n 55 GLN 98 L PHE 99 n 56 PHE 99 L CYS 100 n 57 CYS 100 L HIS 101 n 58 HIS 101 L GLU 102 n 59 GLU 102 L GLU 103 n 60 GLU 103 L GLN 104 n 61 GLN 104 L ASN 105 n 62 ASN 105 L SER 106 n 63 SER 106 L VAL 107 n 64 VAL 107 L VAL 108 n 65 VAL 108 L CYS 109 n 66 CYS 109 L SER 110 n 67 SER 110 L CYS 111 n 68 CYS 111 L ALA 112 n 69 ALA 112 L ARG 113 n 70 ARG 113 L GLY 114 n 71 GLY 114 L TYR 115 n 72 TYR 115 L THR 116 n 73 THR 116 L LEU 117 n 74 LEU 117 L ALA 118 n 75 ALA 118 L ASP 119 n 76 ASP 119 L ASN 120 n 77 ASN 120 L GLY 121 n 78 GLY 121 L LYS 122 n 79 LYS 122 L ALA 123 n 80 ALA 123 L CYS 124 n 81 CYS 124 L ILE 125 n 82 ILE 125 L PRO 126 n 83 PRO 126 L THR 127 n 84 THR 127 L GLY 128 n 85 GLY 128 L PRO 129 n 86 PRO 129 L TYR 130 n 87 TYR 130 L PRO 131 n 88 PRO 131 L CYS 132 n 89 CYS 132 L GLY 133 n 90 GLY 133 L LYS 134 n 91 LYS 134 L GLN 135 n 92 GLN 135 L THR 136 n 93 THR 136 L LEU 137 n 94 LEU 137 L n 95 138 L n 96 139 L author_defined_assembly 2 dimeric A GLU 77 A OE1 GLU 63 1_555 A CA 301 C CA CA 1_555 A GLU 80 A OE1 GLU 66 1_555 60.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLN 20 A N GLN 5 A O MET 157 A O MET 145 A O VAL 160 A O VAL 148 A N GLY 136 A N GLY 125 A N SER 139 A N SER 128 A O PRO 198 A O PRO 188 A O THR 201 A O THR 191 A N PHE 208 A N PHE 198 A N TRP 215 A N TRP 205 A O ILE 227 A O ILE 217 A N TYR 228 A N TYR 218 A O PHE 181 A O PHE 169 A N ARG 67 A N ARG 53 A O LEU 32 A O LEU 17 A O LEU 33 A O LEU 18 A N PHE 41 A N PHE 26 A O THR 45 A O THR 30 A N LEU 53 A N LEU 38 A N THR 54 A N THR 39 A O ALA 104 A O ALA 90 A O ARG 107 A O ARG 93 A N GLU 86 A N GLU 72 L N GLU 103 B N GLU 60 L O SER 106 B O SER 63 L O THR 116 B O THR 73 L N ILE 125 B N ILE 82 1 L TYR 44 B TYR 1 1 Y 1 L LYS 45 B LYS 2 1 Y 1 L ASP 46 B ASP 3 1 Y 1 L GLY 47 B GLY 4 1 Y 1 L ASP 48 B ASP 5 1 Y 1 L GLN 49 B GLN 6 1 Y 1 L CYS 50 B CYS 7 1 Y 1 L GLU 51 B GLU 8 1 Y 1 L THR 52 B THR 9 1 Y 1 L SER 53 B SER 10 1 Y 1 L PRO 54 B PRO 11 1 Y 1 L CYS 55 B CYS 12 1 Y 1 L GLN 56 B GLN 13 1 Y 1 L ASN 57 B ASN 14 1 Y 1 L GLN 58 B GLN 15 1 Y 1 L GLY 59 B GLY 16 1 Y 1 L LYS 60 B LYS 17 1 Y 1 L CYS 61 B CYS 18 1 Y 1 L LYS 62 B LYS 19 1 Y 1 L ASP 63 B ASP 20 1 Y 1 L GLY 64 B GLY 21 1 Y 1 L LEU 65 B LEU 22 1 Y 1 L GLY 66 B GLY 23 1 Y 1 L GLU 67 B GLU 24 1 Y 1 L TYR 68 B TYR 25 1 Y 1 L THR 69 B THR 26 1 Y 1 L CYS 70 B CYS 27 1 Y 1 L THR 71 B THR 28 1 Y 1 L CYS 72 B CYS 29 1 Y 1 L LEU 73 B LEU 30 1 Y 1 L GLU 74 B GLU 31 1 Y 1 L GLY 75 B GLY 32 1 Y 1 L PHE 76 B PHE 33 1 Y 1 L GLU 77 B GLU 34 1 Y 1 L GLY 78 B GLY 35 1 Y 1 L LYS 79 B LYS 36 1 Y 1 L ASN 80 B ASN 37 1 Y 1 L CYS 81 B CYS 38 1 Y 1 L GLU 82 B GLU 39 1 Y 1 L LEU 83 B LEU 40 1 Y 1 L PHE 84 B PHE 41 1 Y 1 L THR 85 B THR 42 1 Y 1 L ARG 86 B ARG 43 1 Y 1 L GLU 138 B GLU 95 1 Y 1 L ARG 139 B ARG 96 1 Y 1 A CYS 22 -58.62 93.94 1 A PRO 28 -48.78 -12.96 1 A GLN 30 -59.90 99.48 1 A ASN 38 52.70 11.50 1 A LEU 59 -74.44 34.83 1 A TYR 60 -132.65 -32.71 1 A GLN 61 -77.93 26.85 1 A THR 73 -90.16 55.05 1 A GLU 74 176.95 6.01 1 A GLU 80 -59.00 -170.81 1 A ALA 81 174.45 142.17 1 A ASN 92 -24.26 -75.00 1 A ARG 93 -55.41 17.94 1 A THR 95 -164.37 113.00 1 A PHE 101 73.51 47.54 1 A ARG 115 -115.82 -155.16 1 A ASN 117 57.63 4.30 1 A ARG 125 -36.27 -82.27 1 A HIS 145 175.46 148.27 1 A SER 172 -56.40 -177.22 1 A THR 177 -77.36 -169.25 1 A PHE 181 -170.23 132.57 1 A ALA 183 -172.48 129.85 B 1 A THR 185 -146.95 -23.65 1 A GLN 187 -71.22 47.07 1 A ASP 189 171.66 151.67 1 A ALA 190 -59.51 174.71 1 A CYS 191 -160.47 -158.10 1 A SER 214 -95.88 -73.61 1 A LYS 230 -65.40 97.20 1 A THR 232 -57.64 -8.92 1 A LEU 235 -39.13 -76.89 1 A THR 244 71.88 122.86 1 L CYS 89 -72.81 30.67 1 L ASP 92 -160.81 52.52 1 L GLN 98 -140.68 -133.74 1 L PHE 99 -37.97 125.58 1 L GLN 104 55.36 -35.12 1 L THR 136 -61.11 95.69 PROTEIN_REP.PARAM PROTEIN.TOP ION.PARAM ION.TOP PARM65.PRO TOPM65.PRO 12.9 0.00 0.00 0.00 0.00 0.00 0.00 0.277 0.013 0.169 3.20 8.00 449 4235 10.6 81.0 RANDOM 8063.56 0.000000 1 RESTRAINED THROUGHOUT 0.0 48.2844 0.359561 0.46 0.27 5.00 0.49 0.24 3.20 8.00 0 2279 40 0 2239 0.009 1.4 24.4 0.89 2.27 1.50 3.76 2.00 2.94 2.00 4.62 2.50 0.318 0.040 0.188 3.39 64 529 593 6 10.8 69.4 3.2 1IQF 4578 1.0 0.053 1 80.8 0.071 3.2 3.3 66.9 phasing GLRF refinement CNX 2000 Human coagulation factor Xa in complex with M55165 1 N N 2 N N 3 N N 4 N N A ALA 55 A ALA 40 HELX_P A LEU 59 A LEU 44 5 1 5 A GLU 124 A GLU 111 HELX_P A LEU 131 A LEU 119 1 2 9 A A A ASP 164 A ASP 152 HELX_P A SER 172 A SER 160 1 3 9 A PHE 234 A PHE 224 HELX_P A LYS 243 A LYS 233 1 4 10 L ASP 92 B ASP 49 HELX_P L CYS 96 B CYS 53 5 5 5 disulf 2.032 A CYS 22 A SG CYS 7 1_555 A CYS 27 A SG CYS 12 1_555 disulf 2.025 A CYS 42 A SG CYS 27 1_555 A CYS 58 A SG CYS 43 1_555 disulf 2.039 A CYS 122 A SG CYS 108 1_555 L CYS 132 B SG CYS 89 1_555 disulf 2.014 A CYS 168 A SG CYS 156 1_555 A CYS 182 A SG CYS 170 1_555 disulf 2.027 A CYS 191 A SG CYS 181 1_555 A CYS 220 A SG CYS 209 1_555 disulf 2.026 L CYS 89 B SG CYS 46 1_555 L CYS 100 B SG CYS 57 1_555 disulf 2.030 L CYS 96 B SG CYS 53 1_555 L CYS 109 B SG CYS 66 1_555 disulf 2.019 L CYS 111 B SG CYS 68 1_555 L CYS 124 B SG CYS 81 1_555 metalc 2.830 A GLU 77 A OE1 GLU 63 1_555 A CA 301 C CA CA 1_555 metalc 2.826 A GLU 80 A OE1 GLU 66 1_555 A CA 301 C CA CA 1_555 HYDROLASE HYDROLASE, SERINE PROTEASE, BLOOD COAGULATION FACTOR, COMPLEX FA10_HUMAN UNP 1 235 P00742 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTR FA10_HUMAN UNP 2 84 P00742 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKA CIPTGPYPCGKQTLER 235 469 1IQF 16 245 P00742 A 1 1 235 84 179 1IQF 44 139 P00742 L 2 1 96 7 6 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 20 A GLN 5 A GLU 21 A GLU 6 A LYS 156 A LYS 144 A PRO 161 A PRO 149 A THR 135 A THR 124 A GLY 140 A GLY 129 A PRO 198 A PRO 188 A ARG 202 A ARG 192 A TYR 207 A TYR 197 A GLY 216 A GLY 206 A GLY 226 A GLY 216 A LYS 230 A LYS 220 A MET 180 A MET 168 A ALA 183 A ALA 171 A PHE 64 A PHE 50 A ARG 67 A ARG 53 A GLN 30 A GLN 15 A ASN 35 A ASN 20 A GLY 40 A GLY 25 A ILE 46 A ILE 31 A TYR 51 A TYR 36 A THR 54 A THR 39 A ALA 104 A ALA 90 A LEU 108 A LEU 94 A VAL 85 A VAL 71 A LYS 90 A LYS 76 L GLU 102 B GLU 59 L GLU 103 B GLU 60 L SER 106 B SER 63 L VAL 107 B VAL 64 L TYR 115 B TYR 72 L LEU 117 B LEU 74 L CYS 124 B CYS 81 L PRO 126 B PRO 83 BINDING SITE FOR RESIDUE CA A 301 A CA 301 Software 5 BINDING SITE FOR RESIDUE XMD A 401 A XMD 401 Software 18 A ASP 70 A ASP 56 5 1_555 A ASN 72 A ASN 58 5 1_555 A GLN 75 A GLN 61 5 1_555 A GLU 77 A GLU 63 5 1_555 A GLU 80 A GLU 66 5 1_555 A GLU 97 A GLU 83 18 1_555 A THR 98 A THR 84 18 1_555 A PHE 174 A PHE 162 18 1_555 A ASP 189 A ASP 179 18 1_555 A ALA 190 A ALA 180 18 1_555 A CYS 191 A CYS 181 18 1_555 A GLN 192 A GLN 182 18 1_555 A SER 195 A SER 185 18 1_555 A VAL 213 A VAL 203 18 1_555 A TRP 215 A TRP 205 18 1_555 A GLY 216 A GLY 206 18 1_555 A GLU 217 A GLU 207 18 1_555 A GLY 218 A GLY 208 18 1_555 A CYS 220 A CYS 209 18 1_555 A ARG 222 A ARG 211 18 1_555 A GLY 226 A GLY 216 18 1_555 A ILE 227 A ILE 217 18 1_555 A TYR 228 A TYR 218 18 1_555 19 P 21 21 21