0.021908
0.000000
0.006469
0.000000
0.019014
0.000000
0.000000
0.000000
0.021918
0.00000
0.00000
0.00000
Matsuura, T.
Sakai, H.
Norioka, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
106.45
90.00
45.65
52.59
47.57
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
beta-D-mannose; D-mannose; mannose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C5 H10 O5
150.130
beta-D-xylopyranose
beta-D-xylose; D-xylose; xylose
D-saccharide, beta linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
S
C
N
76
S
C
N
77
S
C
N
78
R
C
N
79
N
C
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
R
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
S
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
N
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
C
N
138
N
C
N
139
N
O
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
N
C
N
153
N
C
N
154
N
O
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
Y
166
N
C
Y
167
N
N
Y
168
N
C
Y
169
N
C
Y
170
N
N
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
S
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
N
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
S
C
N
255
S
C
N
256
S
C
N
257
S
C
N
258
R
C
N
259
N
C
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
S
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
R
C
N
299
R
C
N
300
R
C
N
301
S
C
N
302
R
C
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
N
N
307
N
O
N
308
N
O
N
309
N
O
N
310
N
O
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
N
373
N
O
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
R
C
N
387
N
O
N
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
N
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
N
437
N
O
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
N
N
451
S
C
N
452
N
C
N
453
N
O
N
454
N
C
N
455
N
C
N
456
N
C
N
457
N
O
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
O
N
470
R
C
N
471
R
C
N
472
S
C
N
473
R
C
N
474
N
C
N
475
N
O
N
476
N
O
N
477
N
O
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
doub
Y
166
N
doub
N
167
N
sing
Y
168
N
sing
N
169
N
sing
Y
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
doub
N
407
N
sing
Y
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
Y
423
N
doub
Y
424
N
sing
Y
425
N
sing
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
doub
N
430
N
sing
Y
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
doub
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
276
45261
45269
10.1074/jbc.M107617200
11577107
Crystal structure at 1.5-A resolution of Pyrus pyrifolia pistil ribonuclease responsible for gametophytic self-incompatibility.
2001
10.2210/pdb1iqq/pdb
pdb_00001iqq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Bending magnet
IMAGE PLATE
2000-01-25
RIGAKU RAXIS IV
fixed-exit double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
BL40B2
SPring-8
1.0
SYNCHROTRON
SPRING-8 BEAMLINE BL40B2
23397.893
S3-RNase
3.1.27.1
1
nat
polymer
880.797
beta-D-xylopyranose-(1-2)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
18.015
water
266
nat
water
RIBONUCLEASE S-3
no
no
YDYFQFTQQYQLAVCNSNRTLCKDPPDKLFTVHGLWPSNMVGPDPSKCPIKNIRKREKLLEHQLEIIWPNVFDRTKNNLF
WDKEWMKHGSCGYPTIDNENHYFETVIKMYISKKQNVSRILSKAKIEPDGKKRALLDIENAIRNGADNKKPKLKCQKKGT
TTELVEITLCSDKSGEHFIDCPHPFEPISPHYCPTNNIKY
YDYFQFTQQYQLAVCNSNRTLCKDPPDKLFTVHGLWPSNMVGPDPSKCPIKNIRKREKLLEHQLEIIWPNVFDRTKNNLF
WDKEWMKHGSCGYPTIDNENHYFETVIKMYISKKQNVSRILSKAKIEPDGKKRALLDIENAIRNGADNKKPKLKCQKKGT
TTELVEITLCSDKSGEHFIDCPHPFEPISPHYCPTNNIKY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Pyrus
sample
3767
Pyrus pyrifolia
1
2.34
47.41
VAPOR DIFFUSION, HANGING DROP
7.0
PEG6000, MES, sodium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Derived calculations
Structure summary
1
0
2001-11-07
1
1
2008-04-27
1
2
2011-07-13
2
0
2020-07-29
2
1
2023-12-27
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
B
NAG
1
n
B
NAG
1
B
NAG
2
n
B
NAG
2
B
MAN
3
n
B
BMA
3
B
XYS
5
n
B
XYP
4
B
MAN
4
n
B
MAN
5
DManpb
b-D-mannopyranose
b-D-Manp
Man
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
DXylpb
b-D-xylopyranose
b-D-Xylp
Xyl
PDBJ
Y
PDBJ
2001-07-25
REL
oligosaccharide
DXylpb1-2[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/4,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a212h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-4/a4-b1_b4-c1_c2-d1_c3-e1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(2+1)][b-D-Xylp]{}[(3+1)][a-D-Manp]{}}}}}
2
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O4
BMA
NAG
3
2
2
O1
HO4
sing
C1
O2
XYP
BMA
4
3
2
O1
HO2
sing
C1
O3
MAN
BMA
5
3
2
O1
HO3
sing
n
n
n
n
n
HOH
water
HOH
1
3
HOH
HOH
206
A
HOH
2
3
HOH
HOH
207
A
HOH
3
3
HOH
HOH
208
A
HOH
4
3
HOH
HOH
209
A
HOH
5
3
HOH
HOH
210
A
HOH
6
3
HOH
HOH
211
A
HOH
7
3
HOH
HOH
212
A
HOH
8
3
HOH
HOH
213
A
HOH
9
3
HOH
HOH
214
A
HOH
10
3
HOH
HOH
215
A
HOH
11
3
HOH
HOH
216
A
HOH
12
3
HOH
HOH
217
A
HOH
13
3
HOH
HOH
218
A
HOH
14
3
HOH
HOH
219
A
HOH
15
3
HOH
HOH
220
A
HOH
16
3
HOH
HOH
221
A
HOH
17
3
HOH
HOH
222
A
HOH
18
3
HOH
HOH
223
A
HOH
19
3
HOH
HOH
224
A
HOH
20
3
HOH
HOH
225
A
HOH
21
3
HOH
HOH
226
A
HOH
22
3
HOH
HOH
227
A
HOH
23
3
HOH
HOH
228
A
HOH
24
3
HOH
HOH
229
A
HOH
25
3
HOH
HOH
230
A
HOH
26
3
HOH
HOH
231
A
HOH
27
3
HOH
HOH
232
A
HOH
28
3
HOH
HOH
233
A
HOH
29
3
HOH
HOH
234
A
HOH
30
3
HOH
HOH
235
A
HOH
31
3
HOH
HOH
236
A
HOH
32
3
HOH
HOH
237
A
HOH
33
3
HOH
HOH
238
A
HOH
34
3
HOH
HOH
239
A
HOH
35
3
HOH
HOH
240
A
HOH
36
3
HOH
HOH
241
A
HOH
37
3
HOH
HOH
242
A
HOH
38
3
HOH
HOH
243
A
HOH
39
3
HOH
HOH
244
A
HOH
40
3
HOH
HOH
245
A
HOH
41
3
HOH
HOH
246
A
HOH
42
3
HOH
HOH
247
A
HOH
43
3
HOH
HOH
248
A
HOH
44
3
HOH
HOH
249
A
HOH
45
3
HOH
HOH
250
A
HOH
46
3
HOH
HOH
251
A
HOH
47
3
HOH
HOH
252
A
HOH
48
3
HOH
HOH
253
A
HOH
49
3
HOH
HOH
254
A
HOH
50
3
HOH
HOH
255
A
HOH
51
3
HOH
HOH
256
A
HOH
52
3
HOH
HOH
257
A
HOH
53
3
HOH
HOH
258
A
HOH
54
3
HOH
HOH
259
A
HOH
55
3
HOH
HOH
260
A
HOH
56
3
HOH
HOH
261
A
HOH
57
3
HOH
HOH
262
A
HOH
58
3
HOH
HOH
263
A
HOH
59
3
HOH
HOH
264
A
HOH
60
3
HOH
HOH
265
A
HOH
61
3
HOH
HOH
266
A
HOH
62
3
HOH
HOH
267
A
HOH
63
3
HOH
HOH
268
A
HOH
64
3
HOH
HOH
269
A
HOH
65
3
HOH
HOH
270
A
HOH
66
3
HOH
HOH
271
A
HOH
67
3
HOH
HOH
272
A
HOH
68
3
HOH
HOH
273
A
HOH
69
3
HOH
HOH
274
A
HOH
70
3
HOH
HOH
275
A
HOH
71
3
HOH
HOH
276
A
HOH
72
3
HOH
HOH
277
A
HOH
73
3
HOH
HOH
278
A
HOH
74
3
HOH
HOH
279
A
HOH
75
3
HOH
HOH
280
A
HOH
76
3
HOH
HOH
281
A
HOH
77
3
HOH
HOH
282
A
HOH
78
3
HOH
HOH
283
A
HOH
79
3
HOH
HOH
284
A
HOH
80
3
HOH
HOH
285
A
HOH
81
3
HOH
HOH
286
A
HOH
82
3
HOH
HOH
287
A
HOH
83
3
HOH
HOH
288
A
HOH
84
3
HOH
HOH
289
A
HOH
85
3
HOH
HOH
290
A
HOH
86
3
HOH
HOH
291
A
HOH
87
3
HOH
HOH
292
A
HOH
88
3
HOH
HOH
293
A
HOH
89
3
HOH
HOH
294
A
HOH
90
3
HOH
HOH
295
A
HOH
91
3
HOH
HOH
296
A
HOH
92
3
HOH
HOH
297
A
HOH
93
3
HOH
HOH
298
A
HOH
94
3
HOH
HOH
299
A
HOH
95
3
HOH
HOH
300
A
HOH
96
3
HOH
HOH
301
A
HOH
97
3
HOH
HOH
302
A
HOH
98
3
HOH
HOH
303
A
HOH
99
3
HOH
HOH
304
A
HOH
100
3
HOH
HOH
305
A
HOH
101
3
HOH
HOH
306
A
HOH
102
3
HOH
HOH
307
A
HOH
103
3
HOH
HOH
308
A
HOH
104
3
HOH
HOH
309
A
HOH
105
3
HOH
HOH
310
A
HOH
106
3
HOH
HOH
311
A
HOH
107
3
HOH
HOH
312
A
HOH
108
3
HOH
HOH
313
A
HOH
109
3
HOH
HOH
314
A
HOH
110
3
HOH
HOH
315
A
HOH
111
3
HOH
HOH
316
A
HOH
112
3
HOH
HOH
317
A
HOH
113
3
HOH
HOH
318
A
HOH
114
3
HOH
HOH
319
A
HOH
115
3
HOH
HOH
320
A
HOH
116
3
HOH
HOH
321
A
HOH
117
3
HOH
HOH
322
A
HOH
118
3
HOH
HOH
323
A
HOH
119
3
HOH
HOH
324
A
HOH
120
3
HOH
HOH
325
A
HOH
121
3
HOH
HOH
326
A
HOH
122
3
HOH
HOH
327
A
HOH
123
3
HOH
HOH
328
A
HOH
124
3
HOH
HOH
329
A
HOH
125
3
HOH
HOH
330
A
HOH
126
3
HOH
HOH
331
A
HOH
127
3
HOH
HOH
332
A
HOH
128
3
HOH
HOH
333
A
HOH
129
3
HOH
HOH
334
A
HOH
130
3
HOH
HOH
335
A
HOH
131
3
HOH
HOH
336
A
HOH
132
3
HOH
HOH
337
A
HOH
133
3
HOH
HOH
338
A
HOH
134
3
HOH
HOH
339
A
HOH
135
3
HOH
HOH
340
A
HOH
136
3
HOH
HOH
341
A
HOH
137
3
HOH
HOH
342
A
HOH
138
3
HOH
HOH
343
A
HOH
139
3
HOH
HOH
344
A
HOH
140
3
HOH
HOH
345
A
HOH
141
3
HOH
HOH
346
A
HOH
142
3
HOH
HOH
347
A
HOH
143
3
HOH
HOH
348
A
HOH
144
3
HOH
HOH
349
A
HOH
145
3
HOH
HOH
350
A
HOH
146
3
HOH
HOH
351
A
HOH
147
3
HOH
HOH
352
A
HOH
148
3
HOH
HOH
353
A
HOH
149
3
HOH
HOH
354
A
HOH
150
3
HOH
HOH
355
A
HOH
151
3
HOH
HOH
356
A
HOH
152
3
HOH
HOH
357
A
HOH
153
3
HOH
HOH
358
A
HOH
154
3
HOH
HOH
359
A
HOH
155
3
HOH
HOH
360
A
HOH
156
3
HOH
HOH
361
A
HOH
157
3
HOH
HOH
362
A
HOH
158
3
HOH
HOH
363
A
HOH
159
3
HOH
HOH
364
A
HOH
160
3
HOH
HOH
365
A
HOH
161
3
HOH
HOH
366
A
HOH
162
3
HOH
HOH
367
A
HOH
163
3
HOH
HOH
368
A
HOH
164
3
HOH
HOH
369
A
HOH
165
3
HOH
HOH
370
A
HOH
166
3
HOH
HOH
371
A
HOH
167
3
HOH
HOH
372
A
HOH
168
3
HOH
HOH
373
A
HOH
169
3
HOH
HOH
374
A
HOH
170
3
HOH
HOH
375
A
HOH
171
3
HOH
HOH
376
A
HOH
172
3
HOH
HOH
377
A
HOH
173
3
HOH
HOH
378
A
HOH
174
3
HOH
HOH
379
A
HOH
175
3
HOH
HOH
380
A
HOH
176
3
HOH
HOH
381
A
HOH
177
3
HOH
HOH
382
A
HOH
178
3
HOH
HOH
383
A
HOH
179
3
HOH
HOH
384
A
HOH
180
3
HOH
HOH
385
A
HOH
181
3
HOH
HOH
386
A
HOH
182
3
HOH
HOH
387
A
HOH
183
3
HOH
HOH
388
A
HOH
184
3
HOH
HOH
389
A
HOH
185
3
HOH
HOH
390
A
HOH
186
3
HOH
HOH
391
A
HOH
187
3
HOH
HOH
392
A
HOH
188
3
HOH
HOH
393
A
HOH
189
3
HOH
HOH
394
A
HOH
190
3
HOH
HOH
395
A
HOH
191
3
HOH
HOH
396
A
HOH
192
3
HOH
HOH
397
A
HOH
193
3
HOH
HOH
398
A
HOH
194
3
HOH
HOH
399
A
HOH
195
3
HOH
HOH
400
A
HOH
196
3
HOH
HOH
401
A
HOH
197
3
HOH
HOH
402
A
HOH
198
3
HOH
HOH
403
A
HOH
199
3
HOH
HOH
404
A
HOH
200
3
HOH
HOH
405
A
HOH
201
3
HOH
HOH
406
A
HOH
202
3
HOH
HOH
407
A
HOH
203
3
HOH
HOH
408
A
HOH
204
3
HOH
HOH
409
A
HOH
205
3
HOH
HOH
410
A
HOH
206
3
HOH
HOH
411
A
HOH
207
3
HOH
HOH
412
A
HOH
208
3
HOH
HOH
413
A
HOH
209
3
HOH
HOH
414
A
HOH
210
3
HOH
HOH
415
A
HOH
211
3
HOH
HOH
416
A
HOH
212
3
HOH
HOH
417
A
HOH
213
3
HOH
HOH
418
A
HOH
214
3
HOH
HOH
419
A
HOH
215
3
HOH
HOH
420
A
HOH
216
3
HOH
HOH
421
A
HOH
217
3
HOH
HOH
422
A
HOH
218
3
HOH
HOH
423
A
HOH
219
3
HOH
HOH
424
A
HOH
220
3
HOH
HOH
425
A
HOH
221
3
HOH
HOH
426
A
HOH
222
3
HOH
HOH
427
A
HOH
223
3
HOH
HOH
428
A
HOH
224
3
HOH
HOH
429
A
HOH
225
3
HOH
HOH
430
A
HOH
226
3
HOH
HOH
431
A
HOH
227
3
HOH
HOH
432
A
HOH
228
3
HOH
HOH
433
A
HOH
229
3
HOH
HOH
434
A
HOH
230
3
HOH
HOH
435
A
HOH
231
3
HOH
HOH
436
A
HOH
232
3
HOH
HOH
437
A
HOH
233
3
HOH
HOH
438
A
HOH
234
3
HOH
HOH
439
A
HOH
235
3
HOH
HOH
440
A
HOH
236
3
HOH
HOH
441
A
HOH
237
3
HOH
HOH
442
A
HOH
238
3
HOH
HOH
443
A
HOH
239
3
HOH
HOH
444
A
HOH
240
3
HOH
HOH
445
A
HOH
241
3
HOH
HOH
446
A
HOH
242
3
HOH
HOH
447
A
HOH
243
3
HOH
HOH
448
A
HOH
244
3
HOH
HOH
449
A
HOH
245
3
HOH
HOH
450
A
HOH
246
3
HOH
HOH
451
A
HOH
247
3
HOH
HOH
452
A
HOH
248
3
HOH
HOH
453
A
HOH
249
3
HOH
HOH
454
A
HOH
250
3
HOH
HOH
455
A
HOH
251
3
HOH
HOH
456
A
HOH
252
3
HOH
HOH
457
A
HOH
253
3
HOH
HOH
458
A
HOH
254
3
HOH
HOH
459
A
HOH
255
3
HOH
HOH
460
A
HOH
256
3
HOH
HOH
461
A
HOH
257
3
HOH
HOH
462
A
HOH
258
3
HOH
HOH
463
A
HOH
259
3
HOH
HOH
464
A
HOH
260
3
HOH
HOH
465
A
HOH
261
3
HOH
HOH
466
A
HOH
262
3
HOH
HOH
467
A
HOH
263
3
HOH
HOH
468
A
HOH
264
3
HOH
HOH
469
A
HOH
265
3
HOH
HOH
470
A
HOH
266
3
HOH
HOH
471
A
TYR
1
n
1
TYR
1
A
ASP
2
n
2
ASP
2
A
TYR
3
n
3
TYR
3
A
PHE
4
n
4
PHE
4
A
GLN
5
n
5
GLN
5
A
PHE
6
n
6
PHE
6
A
THR
7
n
7
THR
7
A
GLN
8
n
8
GLN
8
A
GLN
9
n
9
GLN
9
A
TYR
10
n
10
TYR
10
A
GLN
11
n
11
GLN
11
A
LEU
12
n
12
LEU
12
A
ALA
13
n
13
ALA
13
A
VAL
14
n
14
VAL
14
A
CYS
15
n
15
CYS
15
A
ASN
16
n
16
ASN
16
A
SER
17
n
17
SER
17
A
ASN
18
n
18
ASN
18
A
ARG
19
n
19
ARG
19
A
THR
20
n
20
THR
20
A
LEU
21
n
21
LEU
21
A
CYS
22
n
22
CYS
22
A
LYS
23
n
23
LYS
23
A
ASP
24
n
24
ASP
24
A
PRO
25
n
25
PRO
25
A
PRO
26
n
26
PRO
26
A
ASP
27
n
27
ASP
27
A
LYS
28
n
28
LYS
28
A
LEU
29
n
29
LEU
29
A
PHE
30
n
30
PHE
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
HIS
33
n
33
HIS
33
A
GLY
34
n
34
GLY
34
A
LEU
35
n
35
LEU
35
A
TRP
36
n
36
TRP
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
ASN
39
n
39
ASN
39
A
MET
40
n
40
MET
40
A
VAL
41
n
41
VAL
41
A
GLY
42
n
42
GLY
42
A
PRO
43
n
43
PRO
43
A
ASP
44
n
44
ASP
44
A
PRO
45
n
45
PRO
45
A
SER
46
n
46
SER
46
A
LYS
47
n
47
LYS
47
A
CYS
48
n
48
CYS
48
A
PRO
49
n
49
PRO
49
A
ILE
50
n
50
ILE
50
A
LYS
51
n
51
LYS
51
A
ASN
52
n
52
ASN
52
A
ILE
53
n
53
ILE
53
A
ARG
54
n
54
ARG
54
A
LYS
55
n
55
LYS
55
A
ARG
56
n
56
ARG
56
A
GLU
57
n
57
GLU
57
A
LYS
58
n
58
LYS
58
A
LEU
59
n
59
LEU
59
A
LEU
60
n
60
LEU
60
A
GLU
61
n
61
GLU
61
A
HIS
62
n
62
HIS
62
A
GLN
63
n
63
GLN
63
A
LEU
64
n
64
LEU
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
ILE
67
n
67
ILE
67
A
TRP
68
n
68
TRP
68
A
PRO
69
n
69
PRO
69
A
ASN
70
n
70
ASN
70
A
VAL
71
n
71
VAL
71
A
PHE
72
n
72
PHE
72
A
ASP
73
n
73
ASP
73
A
ARG
74
n
74
ARG
74
A
THR
75
n
75
THR
75
A
LYS
76
n
76
LYS
76
A
ASN
77
n
77
ASN
77
A
ASN
78
n
78
ASN
78
A
LEU
79
n
79
LEU
79
A
PHE
80
n
80
PHE
80
A
TRP
81
n
81
TRP
81
A
ASP
82
n
82
ASP
82
A
LYS
83
n
83
LYS
83
A
GLU
84
n
84
GLU
84
A
TRP
85
n
85
TRP
85
A
MET
86
n
86
MET
86
A
LYS
87
n
87
LYS
87
A
HIS
88
n
88
HIS
88
A
GLY
89
n
89
GLY
89
A
SER
90
n
90
SER
90
A
CYS
91
n
91
CYS
91
A
GLY
92
n
92
GLY
92
A
TYR
93
n
93
TYR
93
A
PRO
94
n
94
PRO
94
A
THR
95
n
95
THR
95
A
ILE
96
n
96
ILE
96
A
ASP
97
n
97
ASP
97
A
ASN
98
n
98
ASN
98
A
GLU
99
n
99
GLU
99
A
ASN
100
n
100
ASN
100
A
HIS
101
n
101
HIS
101
A
TYR
102
n
102
TYR
102
A
PHE
103
n
103
PHE
103
A
GLU
104
n
104
GLU
104
A
THR
105
n
105
THR
105
A
VAL
106
n
106
VAL
106
A
ILE
107
n
107
ILE
107
A
LYS
108
n
108
LYS
108
A
MET
109
n
109
MET
109
A
TYR
110
n
110
TYR
110
A
ILE
111
n
111
ILE
111
A
SER
112
n
112
SER
112
A
LYS
113
n
113
LYS
113
A
LYS
114
n
114
LYS
114
A
GLN
115
n
115
GLN
115
A
ASN
116
n
116
ASN
116
A
VAL
117
n
117
VAL
117
A
SER
118
n
118
SER
118
A
ARG
119
n
119
ARG
119
A
ILE
120
n
120
ILE
120
A
LEU
121
n
121
LEU
121
A
SER
122
n
122
SER
122
A
LYS
123
n
123
LYS
123
A
ALA
124
n
124
ALA
124
A
LYS
125
n
125
LYS
125
A
ILE
126
n
126
ILE
126
A
GLU
127
n
127
GLU
127
A
PRO
128
n
128
PRO
128
A
ASP
129
n
129
ASP
129
A
GLY
130
n
130
GLY
130
A
LYS
131
n
131
LYS
131
A
LYS
132
n
132
LYS
132
A
ARG
133
n
133
ARG
133
A
ALA
134
n
134
ALA
134
A
LEU
135
n
135
LEU
135
A
LEU
136
n
136
LEU
136
A
ASP
137
n
137
ASP
137
A
ILE
138
n
138
ILE
138
A
GLU
139
n
139
GLU
139
A
ASN
140
n
140
ASN
140
A
ALA
141
n
141
ALA
141
A
ILE
142
n
142
ILE
142
A
ARG
143
n
143
ARG
143
A
ASN
144
n
144
ASN
144
A
GLY
145
n
145
GLY
145
A
ALA
146
n
146
ALA
146
A
ASP
147
n
147
ASP
147
A
ASN
148
n
148
ASN
148
A
LYS
149
n
149
LYS
149
A
LYS
150
n
150
LYS
150
A
PRO
151
n
151
PRO
151
A
LYS
152
n
152
LYS
152
A
LEU
153
n
153
LEU
153
A
LYS
154
n
154
LYS
154
A
CYS
155
n
155
CYS
155
A
GLN
156
n
156
GLN
156
A
LYS
157
n
157
LYS
157
A
LYS
158
n
158
LYS
158
A
GLY
159
n
159
GLY
159
A
THR
160
n
160
THR
160
A
THR
161
n
161
THR
161
A
THR
162
n
162
THR
162
A
GLU
163
n
163
GLU
163
A
LEU
164
n
164
LEU
164
A
VAL
165
n
165
VAL
165
A
GLU
166
n
166
GLU
166
A
ILE
167
n
167
ILE
167
A
THR
168
n
168
THR
168
A
LEU
169
n
169
LEU
169
A
CYS
170
n
170
CYS
170
A
SER
171
n
171
SER
171
A
ASP
172
n
172
ASP
172
A
LYS
173
n
173
LYS
173
A
SER
174
n
174
SER
174
A
GLY
175
n
175
GLY
175
A
GLU
176
n
176
GLU
176
A
HIS
177
n
177
HIS
177
A
PHE
178
n
178
PHE
178
A
ILE
179
n
179
ILE
179
A
ASP
180
n
180
ASP
180
A
CYS
181
n
181
CYS
181
A
PRO
182
n
182
PRO
182
A
HIS
183
n
183
HIS
183
A
PRO
184
n
184
PRO
184
A
PHE
185
n
185
PHE
185
A
GLU
186
n
186
GLU
186
A
PRO
187
n
187
PRO
187
A
ILE
188
n
188
ILE
188
A
SER
189
n
189
SER
189
A
PRO
190
n
190
PRO
190
A
HIS
191
n
191
HIS
191
A
TYR
192
n
192
TYR
192
A
CYS
193
n
193
CYS
193
A
PRO
194
n
194
PRO
194
A
THR
195
n
195
THR
195
A
ASN
196
n
196
ASN
196
A
ASN
197
n
197
ASN
197
A
ILE
198
n
198
ILE
198
A
LYS
199
n
199
LYS
199
A
TYR
200
n
200
TYR
200
A
author_defined_assembly
1
monomeric
A
ASN
116
GLYCOSYLATION SITE
A
ASN
116
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
3.09
0.50
120.30
123.39
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
56
56
56
N
1
-3.98
0.50
120.30
116.32
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
133
133
133
N
1
A
A
CB
CG
GLU
GLU
163
163
-0.130
0.019
1.517
1.387
N
1
A
TRP
68
-140.70
53.43
1
A
ASP
73
-167.42
102.55
1
A
ILE
111
-96.65
-70.39
1
A
ALA
146
-140.98
46.46
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
carbohydrate_rep.PARAM
carbohydrate.TOP
14.2
-0.98
0.00
-0.31
1.78
0.00
-0.80
0.202
0.005
0.172
0.172
1.50
21.89
1653
33368
33368
5.0
96.0
RANDOM
727947.44
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MIR
Engh & Huber
FLAT MODEL
48.4079
0.394516
0.17
0.14
5.00
0.05
-0.03
1.50
21.89
266
1968
59
0
1643
0.022
2.0
23.8
1.54
1.92
1.50
2.52
2.00
3.26
2.00
4.28
2.50
0.204
0.013
0.173
1.59
257
5078
6
4.8
92.5
13.7
1.5
21.89
1IQQ
33441
33441
1
96.3
1.5
1.53
1
90.6
data reduction
DENZO
data scaling
SCALEPACK
phasing
SHARP
refinement
CNS
1.1
Crystal Structure of Japanese pear S3-RNase
1
N
N
2
N
N
3
N
N
A
GLN
11
A
GLN
11
HELX_P
A
VAL
14
A
VAL
14
1
H1
4
A
LYS
58
A
LYS
58
HELX_P
A
ILE
67
A
ILE
67
1
H2
10
A
ARG
74
A
ARG
74
HELX_P
A
LYS
76
A
LYS
76
5
H3
3
A
ASN
77
A
ASN
77
HELX_P
A
LYS
87
A
LYS
87
1
H4
11
A
GLY
89
A
GLY
89
HELX_P
A
CYS
91
A
CYS
91
5
H4
3
A
GLU
99
A
GLU
99
HELX_P
A
TYR
110
A
TYR
110
1
H5
12
A
VAL
117
A
VAL
117
HELX_P
A
LYS
123
A
LYS
123
1
H6
7
A
LEU
135
A
LEU
135
HELX_P
A
ARG
143
A
ARG
143
1
H7
9
disulf
2.029
A
CYS
15
A
SG
CYS
15
1_555
A
CYS
22
A
SG
CYS
22
1_555
disulf
2.083
A
CYS
48
A
SG
CYS
48
1_555
A
CYS
91
A
SG
CYS
91
1_555
disulf
2.054
A
CYS
155
A
SG
CYS
155
1_555
A
CYS
193
A
SG
CYS
193
1_555
disulf
2.087
A
CYS
170
A
SG
CYS
170
1_555
A
CYS
181
A
SG
CYS
181
1_555
covale
1.445
one
N-Glycosylation
A
ASN
116
A
ND2
ASN
116
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.366
both
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.392
both
B
NAG
2
B
O4
NAG
1_555
B
BMA
3
B
C1
BMA
1_555
covale
1.378
both
B
BMA
3
B
O2
BMA
1_555
B
XYP
4
B
C1
XYP
1_555
covale
1.407
both
B
BMA
3
B
O3
BMA
1_555
B
MAN
5
B
C1
MAN
1_555
HYDROLASE
PYRUS PYRIFOLIA, JAPANESE PEAR, S-RNASE, SELF-INCOMPATIBILITY, T2 FAMILY RIBONUCLEASE, HYDROLASE
A
TYR
93
A
TYR
93
1
A
PRO
94
A
PRO
94
-0.32
RNS3_PYRPY
UNP
1
O80323
23
222
1IQQ
1
200
O80323
A
1
1
200
1
1
1
1
1
1
1
A
TYR
3
A
TYR
3
A
TYR
10
A
TYR
10
A
PHE
30
A
PHE
30
A
SER
38
A
SER
38
A
LYS
132
A
LYS
132
A
ARG
133
A
ARG
133
A
LYS
152
A
LYS
152
A
LYS
158
A
LYS
158
A
THR
161
A
THR
161
A
SER
171
A
SER
171
A
PHE
178
A
PHE
178
A
ILE
179
A
ILE
179
A
ILE
198
A
ILE
198
A
LYS
199
A
LYS
199
4
P 1 21 1