1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Katahira, M.
Miyanoiri, Y.
Enokizono, Y.
Matsuda, G.
Nagata, T.
Ishikawa, F.
Uesugi, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
N
C
N
109
N
C
N
110
N
O
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
Y
122
N
C
Y
123
N
N
Y
124
N
C
Y
125
N
C
Y
126
N
N
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
S
C
N
143
N
C
N
144
N
C
N
145
N
C
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
N
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
S
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
Y
232
N
C
Y
233
N
C
Y
234
N
C
Y
235
N
C
Y
236
N
C
Y
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
O
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
R
C
N
286
N
O
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
Y
121
N
sing
Y
122
N
doub
Y
123
N
doub
N
124
N
sing
Y
125
N
sing
N
126
N
sing
Y
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
Y
227
N
doub
Y
228
N
sing
Y
229
N
sing
N
230
N
sing
Y
231
N
doub
N
232
N
sing
Y
233
N
doub
N
234
N
sing
Y
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
311
973
988
10.1006/jmbi.2001.4862
11531333
Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA.
2001
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
287
221
237
10.1006/jmbi.1999.2616
Structure and Interactions with RNA of the N-Terminal UUAG-specific RNA-binding Domain of hnRNP D0
1999
US
Mol.Cell.Biol.
MCEBD4
2044
0270-7306
13
4301
4310
Nuclear Proteins That Bind the Pre-mRNA 3' Splice Site Sequence r(UUAG/G) and the Human Telomeric DNA Sequence d(TTAGGG)n
1993
10.2210/pdb1iqt/pdb
pdb_00001iqt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8657.043
heterogeneous nuclear ribonucleoprotein D0
C-terminal domain
1
man
polymer
AUF1
no
no
KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA
KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
pET3a
atom_site
citation_author
pdbx_struct_assembly
pdbx_struct_assembly_prop
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
database_2
pdbx_nmr_software
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
Data collection
Database references
1
0
2002-08-07
1
1
2008-04-27
1
2
2011-07-13
2
0
2018-06-27
2
1
2023-12-27
_atom_site.auth_atom_id
_atom_site.label_atom_id
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
1HD0 contains the Minimized Average Structure of the N-terminal domain of hnRNP D0
1HD1 contains the 20 Structures of the N-terminal domain of hnRNP D0
PDBJ
Y
PDBJ
2001-08-01
REL
The structure was determined using 2D homonuclear and 3D 15N-edited heteronuclear techniques.
structures with the lowest energy
200
20
3D_15N-separated_NOESY
HNHA
2D NOESY
2D NOESY
DQF-COSY
0mM
6.0
1
atm
298
K
simulated annealing
2mM 15N labeled hnRNP D0 RBD2, 20mM sodium phosphate, 1mM sodium azide, 10mM deuterated DTT, small amounts of DSS
95% H2O/5% D2O
2mM hnRNP D0 RBD2, 20mM sodium phosphate, 1mM sodium azide, 10mM deuterated DTT, small amounts of DSS
95% H2O/5% D2O
2mM hnRNP D0 RBD2, 20mM sodium phosphate, 1mM sodium azide, 10mM deuterated DTT, small amounts of DSS
100% D2O
Brunger
structure solution
X-PLOR
3.8
Garret
data analysis
CAPP/PIPP/STAPP
4.2.5
Bruker
processing
XwinNMR
2.6
Brunger
refinement
X-PLOR
3.8
600
Bruker
DRX
LYS
183
n
1
LYS
183
A
ILE
184
n
2
ILE
184
A
PHE
185
n
3
PHE
185
A
VAL
186
n
4
VAL
186
A
GLY
187
n
5
GLY
187
A
GLY
188
n
6
GLY
188
A
LEU
189
n
7
LEU
189
A
SER
190
n
8
SER
190
A
PRO
191
n
9
PRO
191
A
ASP
192
n
10
ASP
192
A
THR
193
n
11
THR
193
A
PRO
194
n
12
PRO
194
A
GLU
195
n
13
GLU
195
A
GLU
196
n
14
GLU
196
A
LYS
197
n
15
LYS
197
A
ILE
198
n
16
ILE
198
A
ARG
199
n
17
ARG
199
A
GLU
200
n
18
GLU
200
A
TYR
201
n
19
TYR
201
A
PHE
202
n
20
PHE
202
A
GLY
203
n
21
GLY
203
A
GLY
204
n
22
GLY
204
A
PHE
205
n
23
PHE
205
A
GLY
206
n
24
GLY
206
A
GLU
207
n
25
GLU
207
A
VAL
208
n
26
VAL
208
A
GLU
209
n
27
GLU
209
A
SER
210
n
28
SER
210
A
ILE
211
n
29
ILE
211
A
GLU
212
n
30
GLU
212
A
LEU
213
n
31
LEU
213
A
PRO
214
n
32
PRO
214
A
MET
215
n
33
MET
215
A
ASP
216
n
34
ASP
216
A
ASN
217
n
35
ASN
217
A
LYS
218
n
36
LYS
218
A
THR
219
n
37
THR
219
A
ASN
220
n
38
ASN
220
A
LYS
221
n
39
LYS
221
A
ARG
222
n
40
ARG
222
A
ARG
223
n
41
ARG
223
A
GLY
224
n
42
GLY
224
A
PHE
225
n
43
PHE
225
A
CYS
226
n
44
CYS
226
A
PHE
227
n
45
PHE
227
A
ILE
228
n
46
ILE
228
A
THR
229
n
47
THR
229
A
PHE
230
n
48
PHE
230
A
LYS
231
n
49
LYS
231
A
GLU
232
n
50
GLU
232
A
GLU
233
n
51
GLU
233
A
GLU
234
n
52
GLU
234
A
PRO
235
n
53
PRO
235
A
VAL
236
n
54
VAL
236
A
LYS
237
n
55
LYS
237
A
LYS
238
n
56
LYS
238
A
ILE
239
n
57
ILE
239
A
MET
240
n
58
MET
240
A
GLU
241
n
59
GLU
241
A
LYS
242
n
60
LYS
242
A
LYS
243
n
61
LYS
243
A
TYR
244
n
62
TYR
244
A
HIS
245
n
63
HIS
245
A
ASN
246
n
64
ASN
246
A
VAL
247
n
65
VAL
247
A
GLY
248
n
66
GLY
248
A
LEU
249
n
67
LEU
249
A
SER
250
n
68
SER
250
A
LYS
251
n
69
LYS
251
A
CYS
252
n
70
CYS
252
A
GLU
253
n
71
GLU
253
A
ILE
254
n
72
ILE
254
A
LYS
255
n
73
LYS
255
A
VAL
256
n
74
VAL
256
A
ALA
257
n
75
ALA
257
A
author_defined_assembly
1
monomeric
0
0
5460
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
SER
210
A
O
SER
28
A
N
THR
229
A
N
THR
47
A
O
ILE
228
A
O
ILE
46
A
N
ILE
184
A
N
ILE
2
A
O
PHE
185
A
O
PHE
3
A
N
LYS
255
A
N
LYS
73
1
A
A
H
O
VAL
SER
247
250
1.47
1
A
A
O
H
LYS
ALA
183
257
1.49
1
A
A
O
H
PRO
ILE
194
198
1.52
1
A
A
O
H
ILE
LYS
239
242
1.54
1
A
A
O
H
THR
GLU
193
195
1.56
2
A
A
O
H
PRO
ILE
194
198
1.50
2
A
A
O
H
LYS
ALA
183
257
1.50
2
A
A
O
H
ILE
LYS
239
242
1.53
3
A
A
H
O
VAL
SER
247
250
1.44
3
A
A
O
H
PRO
ILE
194
198
1.49
3
A
A
O
H
LYS
ALA
183
257
1.50
3
A
A
O
H
ILE
LYS
239
242
1.52
4
A
A
O
H
LYS
ALA
183
257
1.51
4
A
A
O
H
ILE
LYS
239
242
1.52
5
A
A
O
H
PRO
ILE
194
198
1.40
5
A
A
O
H
LYS
ALA
183
257
1.51
5
A
A
O
H
ILE
LYS
239
242
1.54
6
A
A
O
H
LYS
ALA
183
257
1.51
6
A
A
O
H
PRO
ILE
194
198
1.55
7
A
A
O
H
LYS
ALA
183
257
1.50
7
A
A
O
H
PRO
ILE
194
198
1.50
7
A
A
H
O
VAL
SER
247
250
1.51
7
A
A
O
H
ILE
LYS
239
242
1.55
8
A
A
O
H
LYS
ALA
183
257
1.45
8
A
A
O
H
ILE
LYS
239
242
1.48
8
A
A
H
O
VAL
SER
247
250
1.51
8
A
A
O
H
PRO
ILE
194
198
1.56
9
A
A
O
H
LYS
ALA
183
257
1.49
9
A
A
O
H
ILE
LYS
239
242
1.49
10
A
A
O
H
ILE
LYS
239
242
1.49
10
A
A
O
H
LYS
ALA
183
257
1.50
10
A
A
O
H
PRO
ILE
194
198
1.50
10
A
A
H
O
VAL
SER
247
250
1.52
11
A
A
O
H
LYS
ALA
183
257
1.48
11
A
A
O
H
ILE
LYS
239
242
1.49
11
A
A
O
H
PRO
ILE
194
198
1.54
12
A
A
O
H
LYS
ALA
183
257
1.51
12
A
A
O
H
ILE
LYS
239
242
1.54
12
A
A
O
H
PRO
ILE
194
198
1.54
13
A
A
O
H
LYS
ALA
183
257
1.46
13
A
A
O
H
ILE
LYS
239
242
1.48
13
A
A
H
O
VAL
SER
247
250
1.49
13
A
A
O
H
PRO
ILE
194
198
1.56
14
A
A
O
H
LYS
ALA
183
257
1.46
14
A
A
H
O
VAL
SER
247
250
1.50
14
A
A
O
H
PRO
ILE
194
198
1.55
14
A
A
O
H
ILE
LYS
239
242
1.56
15
A
A
O
H
LYS
ALA
183
257
1.47
15
A
A
H
O
VAL
SER
247
250
1.51
15
A
A
O
H
PRO
ILE
194
198
1.53
15
A
A
OD1
H
ASN
LYS
220
221
1.57
16
A
A
O
H
LYS
ALA
183
257
1.49
16
A
A
O
H
PRO
ILE
194
198
1.57
16
A
A
O
H
THR
GLU
193
195
1.58
17
A
A
O
H
LYS
ALA
183
257
1.43
17
A
A
O
H
PRO
ILE
194
198
1.52
17
A
A
H
O
VAL
SER
247
250
1.53
17
A
A
O
H
ILE
LYS
239
242
1.59
18
A
A
O
H
LYS
ALA
183
257
1.46
18
A
A
O
H
PRO
ILE
194
198
1.52
19
A
A
H
O
VAL
SER
247
250
1.46
19
A
A
O
H
LYS
ALA
183
257
1.48
19
A
A
O
H
ILE
LYS
239
242
1.49
19
A
A
O
H
PRO
ILE
194
198
1.53
19
A
A
OE1
H
GLU
GLU
195
196
1.58
20
A
A
H
O
VAL
SER
247
250
1.46
20
A
A
O
H
LYS
ALA
183
257
1.48
20
A
A
O
H
ILE
LYS
239
242
1.53
1
A
ARG
199
0.314
SIDE CHAIN
1
A
ARG
222
0.266
SIDE CHAIN
1
A
ARG
223
0.215
SIDE CHAIN
2
A
ARG
199
0.229
SIDE CHAIN
2
A
ARG
222
0.311
SIDE CHAIN
2
A
ARG
223
0.314
SIDE CHAIN
3
A
ARG
199
0.315
SIDE CHAIN
3
A
ARG
222
0.298
SIDE CHAIN
4
A
ARG
199
0.286
SIDE CHAIN
4
A
ARG
222
0.276
SIDE CHAIN
4
A
ARG
223
0.312
SIDE CHAIN
5
A
ARG
199
0.317
SIDE CHAIN
5
A
ARG
222
0.270
SIDE CHAIN
5
A
ARG
223
0.273
SIDE CHAIN
6
A
ARG
199
0.308
SIDE CHAIN
6
A
ARG
222
0.194
SIDE CHAIN
6
A
ARG
223
0.281
SIDE CHAIN
7
A
ARG
199
0.131
SIDE CHAIN
7
A
ARG
222
0.110
SIDE CHAIN
7
A
ARG
223
0.298
SIDE CHAIN
8
A
ARG
199
0.269
SIDE CHAIN
8
A
ARG
222
0.303
SIDE CHAIN
8
A
ARG
223
0.310
SIDE CHAIN
9
A
ARG
199
0.174
SIDE CHAIN
9
A
ARG
222
0.314
SIDE CHAIN
9
A
ARG
223
0.303
SIDE CHAIN
10
A
ARG
199
0.318
SIDE CHAIN
10
A
ARG
222
0.186
SIDE CHAIN
10
A
ARG
223
0.253
SIDE CHAIN
11
A
ARG
199
0.284
SIDE CHAIN
11
A
ARG
222
0.293
SIDE CHAIN
11
A
ARG
223
0.249
SIDE CHAIN
12
A
ARG
199
0.299
SIDE CHAIN
12
A
ARG
222
0.271
SIDE CHAIN
12
A
ARG
223
0.317
SIDE CHAIN
13
A
ARG
199
0.311
SIDE CHAIN
13
A
ARG
222
0.307
SIDE CHAIN
13
A
ARG
223
0.211
SIDE CHAIN
14
A
ARG
199
0.307
SIDE CHAIN
14
A
ARG
222
0.086
SIDE CHAIN
14
A
ARG
223
0.304
SIDE CHAIN
15
A
ARG
199
0.304
SIDE CHAIN
15
A
ARG
223
0.089
SIDE CHAIN
16
A
ARG
222
0.272
SIDE CHAIN
17
A
ARG
199
0.318
SIDE CHAIN
17
A
ARG
222
0.133
SIDE CHAIN
18
A
ARG
199
0.309
SIDE CHAIN
18
A
ARG
222
0.189
SIDE CHAIN
18
A
ARG
223
0.163
SIDE CHAIN
19
A
ARG
223
0.226
SIDE CHAIN
20
A
ARG
199
0.286
SIDE CHAIN
20
A
ARG
222
0.148
SIDE CHAIN
20
A
ARG
223
0.309
SIDE CHAIN
1
A
LEU
189
26.74
40.09
1
A
PRO
194
-61.85
58.22
1
A
TYR
201
-91.67
-71.33
1
A
ASP
216
-97.16
-155.18
1
A
ASN
217
58.23
-80.25
1
A
THR
219
-146.81
51.62
1
A
ASN
220
-146.20
-86.99
1
A
PHE
230
-111.36
-139.14
1
A
LYS
231
-125.25
-67.94
1
A
GLU
232
-70.48
-85.17
1
A
GLU
233
161.21
-27.33
1
A
LYS
243
-29.21
-31.86
1
A
HIS
245
-89.71
-151.82
1
A
LYS
251
-119.53
54.43
1
A
CYS
252
-42.01
167.90
1
A
VAL
256
-38.74
166.58
2
A
LEU
189
16.45
54.39
2
A
SER
190
-41.34
166.40
2
A
THR
193
-39.28
96.08
2
A
PRO
194
-72.93
49.06
2
A
TYR
201
-91.65
-71.46
2
A
MET
215
52.66
98.24
2
A
THR
219
-150.60
39.04
2
A
ASN
220
-150.92
-42.30
2
A
ARG
223
-51.65
-174.54
2
A
PHE
230
-104.17
-157.60
2
A
GLU
232
-91.61
-70.98
2
A
GLU
233
165.45
-28.03
2
A
LYS
243
-25.00
-40.68
2
A
HIS
245
-89.64
-159.60
2
A
LYS
251
-149.86
51.75
2
A
CYS
252
-34.86
156.01
2
A
VAL
256
-36.65
165.57
3
A
LEU
189
0.02
68.52
3
A
SER
190
-41.00
165.94
3
A
THR
193
-38.88
95.38
3
A
PRO
194
-73.13
46.87
3
A
TYR
201
-91.30
-72.03
3
A
PRO
214
-69.11
89.37
3
A
ASP
216
-79.51
-138.90
3
A
ASN
217
60.46
94.22
3
A
ASN
220
-150.78
-41.83
3
A
PHE
230
-101.36
-165.65
3
A
LYS
231
-92.21
-65.22
3
A
LYS
243
-25.42
-39.81
3
A
HIS
245
-91.19
-157.97
3
A
CYS
252
-39.24
161.19
3
A
VAL
256
-38.38
167.46
4
A
LEU
189
12.89
56.61
4
A
SER
190
-42.12
166.84
4
A
THR
193
-38.92
95.99
4
A
GLU
195
-97.73
-70.56
4
A
TYR
201
-90.89
-70.40
4
A
ILE
211
-118.57
-169.49
4
A
PRO
214
-66.41
-154.25
4
A
ASN
217
64.18
-69.00
4
A
THR
219
-144.59
50.06
4
A
ASN
220
-150.20
-38.68
4
A
ARG
222
-45.78
163.94
4
A
ARG
223
-47.46
177.06
4
A
PHE
230
-109.80
-164.86
4
A
GLU
233
147.72
-29.41
4
A
LYS
243
-25.43
-37.42
4
A
HIS
245
-102.36
-145.91
4
A
LEU
249
-142.62
28.92
4
A
LYS
251
-90.20
46.26
4
A
CYS
252
-35.57
153.85
4
A
VAL
256
-38.30
167.14
5
A
LEU
189
-34.41
156.94
5
A
THR
193
-38.64
95.02
5
A
TYR
201
-91.02
-68.80
5
A
PRO
214
-58.80
-78.09
5
A
MET
215
40.45
-88.66
5
A
ASP
216
-40.96
166.74
5
A
ASN
217
67.82
83.24
5
A
THR
219
-150.30
52.29
5
A
ASN
220
-150.47
-99.86
5
A
PHE
230
-104.68
-126.41
5
A
LYS
231
-139.92
-56.09
5
A
GLU
232
-92.80
-69.75
5
A
GLU
233
165.88
-31.40
5
A
LYS
243
-26.55
-39.37
5
A
LEU
249
48.24
28.08
5
A
LYS
251
-150.47
53.69
5
A
CYS
252
-39.05
161.71
5
A
LYS
255
-99.18
-154.67
6
A
LEU
189
-24.83
145.11
6
A
ASP
192
-150.91
85.76
6
A
THR
193
-40.41
99.92
6
A
PRO
194
-68.06
71.98
6
A
TYR
201
-91.55
-70.86
6
A
PRO
214
-59.92
105.87
6
A
MET
215
-121.45
-158.33
6
A
ASN
217
-96.72
44.66
6
A
LYS
218
-146.86
48.36
6
A
THR
219
-148.65
-81.64
6
A
ASN
220
-144.30
-33.33
6
A
ARG
222
-124.38
-169.64
6
A
CYS
226
-165.07
117.37
6
A
PHE
230
-100.65
-142.68
6
A
LYS
231
-123.23
-58.56
6
A
GLU
232
-92.24
-70.08
6
A
GLU
233
163.76
-27.61
6
A
LYS
242
-142.26
52.88
6
A
LYS
243
-26.32
-36.89
6
A
LYS
251
-106.79
56.71
6
A
CYS
252
-41.34
162.95
6
A
VAL
256
-37.55
167.01
7
A
LEU
189
69.43
151.66
7
A
THR
193
-39.59
96.62
7
A
PRO
194
-72.89
47.18
7
A
GLU
195
-37.33
-71.59
7
A
TYR
201
-90.45
-71.05
7
A
GLU
207
-39.84
141.40
7
A
ILE
211
-118.58
-166.82
7
A
MET
215
-132.81
-80.77
7
A
ASN
217
70.96
83.87
7
A
ASN
220
-150.24
-73.78
7
A
ARG
222
-56.87
-175.33
7
A
PHE
230
-118.93
-116.04
7
A
LYS
231
-159.64
-47.12
7
A
GLU
232
-83.75
-101.18
7
A
GLU
233
176.05
-27.81
7
A
LYS
243
-25.02
-40.04
7
A
HIS
245
-89.64
-159.61
7
A
CYS
252
-40.07
157.04
7
A
VAL
256
-40.60
166.62
8
A
LEU
189
24.25
44.61
8
A
THR
193
-41.58
103.92
8
A
PRO
194
-66.92
43.23
8
A
TYR
201
-91.21
-72.27
8
A
PRO
214
-64.75
-174.57
8
A
ASP
216
-72.07
-163.64
8
A
ASN
217
36.61
94.00
8
A
LYS
218
-164.48
55.90
8
A
ASN
220
-151.26
-45.30
8
A
LYS
221
-105.74
-161.48
8
A
ARG
222
-48.76
-179.11
8
A
PHE
230
-109.56
-125.02
8
A
LYS
231
-174.70
-50.25
8
A
GLU
233
88.52
-27.12
8
A
LYS
243
-26.96
-36.50
8
A
HIS
245
-102.35
-158.32
8
A
CYS
252
-37.19
156.89
8
A
VAL
256
-34.48
159.90
9
A
LEU
189
1.46
56.15
9
A
SER
190
-44.80
170.97
9
A
THR
193
-39.09
97.05
9
A
GLU
195
-94.44
-66.72
9
A
TYR
201
-91.34
-69.96
9
A
ILE
211
-106.46
-168.39
9
A
ASP
216
44.20
-145.73
9
A
ASN
217
41.47
93.08
9
A
ASN
220
-150.23
-41.25
9
A
PHE
230
-98.28
-140.30
9
A
LYS
231
-126.83
-54.85
9
A
GLU
232
-97.40
-68.44
9
A
GLU
233
162.35
-28.38
9
A
LYS
243
-26.95
-36.34
9
A
HIS
245
-103.34
-150.81
9
A
LEU
249
44.95
24.00
9
A
CYS
252
-38.81
154.72
9
A
VAL
256
-39.85
165.03
10
A
LEU
189
22.40
43.94
10
A
SER
190
-47.42
175.64
10
A
THR
193
-42.69
101.90
10
A
PRO
194
-63.62
64.41
10
A
TYR
201
-91.52
-70.59
10
A
ILE
211
-112.38
-168.17
10
A
ASP
216
-152.98
36.30
10
A
LYS
218
70.25
53.34
10
A
THR
219
-111.82
-83.59
10
A
ASN
220
-145.54
-105.85
10
A
ARG
222
60.23
130.34
10
A
ARG
223
-48.33
171.31
10
A
PHE
230
-108.90
-134.33
10
A
LYS
231
-128.20
-69.75
10
A
GLU
232
-73.82
-80.50
10
A
GLU
233
161.43
-26.78
10
A
LYS
243
-29.62
-32.69
10
A
HIS
245
-93.03
-144.78
10
A
LYS
251
-90.26
44.42
10
A
CYS
252
-37.27
156.86
10
A
VAL
256
-36.87
162.06
11
A
LEU
189
-38.67
172.16
11
A
THR
193
-38.01
96.82
11
A
TYR
201
-90.94
-69.90
11
A
PRO
214
-50.06
-79.23
11
A
MET
215
-171.57
-70.54
11
A
ASN
217
45.48
82.41
11
A
ASN
220
-150.43
-100.39
11
A
ARG
222
45.32
80.00
11
A
PHE
230
-105.94
-131.48
11
A
LYS
231
-133.02
-64.71
11
A
GLU
232
-77.42
-80.47
11
A
GLU
233
162.97
-26.13
11
A
LYS
243
-30.87
-33.02
11
A
HIS
245
-89.50
-148.72
11
A
LEU
249
44.90
25.31
11
A
LYS
251
-90.06
44.36
11
A
CYS
252
-29.07
148.30
11
A
VAL
256
-37.60
162.33
12
A
LEU
189
13.61
57.15
12
A
SER
190
-42.42
164.51
12
A
ASP
192
-150.66
85.66
12
A
THR
193
-40.21
99.03
12
A
PRO
194
-67.80
72.47
12
A
TYR
201
-91.36
-71.77
12
A
PRO
214
-70.10
-152.98
12
A
MET
215
-113.59
-147.38
12
A
ASN
217
68.76
78.05
12
A
LYS
218
-155.70
56.58
12
A
ASN
220
-148.66
-43.39
12
A
ARG
223
175.51
61.95
12
A
LYS
242
-140.03
52.26
12
A
LYS
243
-31.86
-25.98
12
A
HIS
245
-89.61
-149.66
12
A
LYS
251
-103.76
52.07
12
A
CYS
252
-36.77
157.91
12
A
VAL
256
-38.43
166.81
13
A
PRO
194
-64.58
60.88
13
A
TYR
201
-91.25
-72.04
13
A
GLU
207
-39.76
142.48
13
A
MET
215
62.25
-163.22
13
A
LYS
218
176.52
67.85
13
A
ASN
220
-150.62
-43.19
13
A
ARG
222
-41.44
157.12
13
A
CYS
226
-170.35
125.44
13
A
PHE
230
-100.13
-141.63
13
A
GLU
232
-102.80
-69.65
13
A
GLU
233
174.03
-31.08
13
A
LYS
243
-29.09
-33.37
13
A
HIS
245
-95.80
-149.79
13
A
CYS
252
-40.05
161.56
13
A
VAL
256
-43.97
167.00
14
A
PRO
194
-67.92
52.34
14
A
TYR
201
-91.16
-70.91
14
A
PRO
214
-50.57
83.64
14
A
MET
215
37.49
-93.23
14
A
ASP
216
-175.39
-178.51
14
A
ASN
217
62.36
-75.12
14
A
THR
219
-142.71
49.94
14
A
ASN
220
-142.10
-39.08
14
A
ARG
223
30.68
61.44
14
A
CYS
226
-170.73
129.11
14
A
PHE
230
-117.82
-115.70
14
A
LYS
231
-163.77
-39.65
14
A
GLU
232
-87.83
-96.16
14
A
GLU
233
169.61
-24.53
14
A
LYS
243
-28.12
-33.65
14
A
HIS
245
-92.79
-147.14
14
A
LEU
249
-154.23
23.08
14
A
LYS
251
-102.06
50.54
14
A
CYS
252
-43.84
169.95
14
A
VAL
256
-43.62
166.83
15
A
LEU
189
3.56
65.00
15
A
SER
190
-43.75
170.07
15
A
ASP
192
-150.39
79.98
15
A
THR
193
-39.69
97.09
15
A
TYR
201
-91.46
-70.49
15
A
MET
215
71.36
-162.61
15
A
ASP
216
-155.83
26.74
15
A
THR
219
-145.47
50.53
15
A
ASN
220
-149.92
-48.93
15
A
ARG
222
-58.92
-166.23
15
A
ARG
223
-39.72
161.88
15
A
PHE
230
-103.44
-136.01
15
A
LYS
231
-154.27
-48.41
15
A
GLU
233
131.06
-27.42
15
A
LYS
243
-26.45
-35.57
15
A
HIS
245
-97.79
-148.88
15
A
LYS
251
-113.41
54.91
15
A
CYS
252
-40.47
162.18
15
A
VAL
256
-35.08
161.96
16
A
LEU
189
21.84
39.83
16
A
SER
190
-41.39
167.12
16
A
ASP
192
-150.49
87.31
16
A
THR
193
-48.25
106.31
16
A
PRO
194
-63.27
55.31
16
A
TYR
201
-91.25
-73.69
16
A
ILE
211
-105.20
-168.43
16
A
PRO
214
-69.85
-172.36
16
A
THR
219
-144.87
49.28
16
A
ASN
220
-150.45
-46.45
16
A
ARG
222
-102.22
53.16
16
A
PHE
230
-114.44
-127.83
16
A
LYS
231
-145.04
-44.67
16
A
GLU
232
-82.74
-82.80
16
A
GLU
233
161.73
-28.54
16
A
LYS
243
-25.46
-38.18
16
A
LEU
249
48.22
22.37
16
A
LYS
251
-97.94
53.74
16
A
CYS
252
-41.67
164.67
16
A
VAL
256
-37.10
163.65
17
A
LEU
189
10.35
58.30
17
A
SER
190
-44.77
168.49
17
A
THR
193
-40.21
98.99
17
A
PRO
194
-69.25
45.17
17
A
TYR
201
-91.02
-71.87
17
A
ILE
211
-110.66
-169.80
17
A
PRO
214
-65.60
-165.17
17
A
ASP
216
-77.56
-162.24
17
A
ASN
217
56.14
85.07
17
A
THR
219
-145.43
47.49
17
A
ASN
220
-150.51
-45.36
17
A
ARG
222
-103.03
65.86
17
A
PHE
230
-99.47
-112.75
17
A
LYS
231
175.32
-53.07
17
A
GLU
233
87.70
-21.35
17
A
LYS
242
-140.06
52.98
17
A
LYS
243
-27.87
-34.48
17
A
HIS
245
-97.96
-154.85
17
A
CYS
252
-34.08
152.89
17
A
VAL
256
-38.32
169.36
18
A
PRO
194
-67.36
58.67
18
A
TYR
201
-90.60
-71.18
18
A
PRO
214
-49.71
88.66
18
A
MET
215
41.75
-141.74
18
A
ASN
217
63.77
-67.78
18
A
THR
219
-150.76
53.38
18
A
ASN
220
-131.68
-37.31
18
A
ARG
222
-55.36
-163.81
18
A
ARG
223
-43.73
169.41
18
A
PHE
230
-97.10
-131.64
18
A
LYS
231
-136.09
-52.67
18
A
GLU
232
-96.48
-69.75
18
A
GLU
233
161.98
-26.83
18
A
LYS
243
-26.64
-34.86
18
A
HIS
245
-89.87
-157.61
18
A
LYS
251
-93.42
51.63
18
A
CYS
252
-41.86
164.53
18
A
VAL
256
-39.72
166.83
19
A
PRO
194
-65.51
54.92
19
A
TYR
201
-90.99
-70.99
19
A
PRO
214
-62.57
85.88
19
A
ASP
216
-172.05
-65.21
19
A
THR
219
-151.29
43.61
19
A
ASN
220
-151.06
-98.43
19
A
PHE
230
-101.52
-166.91
19
A
LYS
243
-25.52
-37.84
19
A
LYS
251
-107.01
56.03
19
A
CYS
252
-45.43
169.76
19
A
VAL
256
-40.74
168.23
20
A
LEU
189
13.53
55.31
20
A
SER
190
-45.03
171.45
20
A
ASP
192
-150.08
87.25
20
A
THR
193
-39.13
96.80
20
A
GLU
195
-95.63
-65.25
20
A
TYR
201
-91.75
-69.89
20
A
MET
215
-53.54
-177.20
20
A
ASP
216
60.36
150.68
20
A
ASN
217
52.73
97.66
20
A
LYS
218
179.32
48.93
20
A
ASN
220
-150.43
-37.40
20
A
ARG
223
175.74
141.46
20
A
PHE
230
-103.71
-149.89
20
A
GLU
233
164.24
-27.52
20
A
LYS
243
-26.59
-33.12
20
A
HIS
245
-98.50
-145.82
20
A
LYS
251
-107.41
44.55
20
A
CYS
252
-35.98
154.46
20
A
VAL
256
-38.30
166.12
Solution structure of the C-terminal RNA-binding domain of heterogeneous nuclear ribonucleoprotein D0 (AUF1)
1
N
N
A
PRO
194
A
PRO
12
HELX_P
A
GLY
206
A
GLY
24
1
1
13
A
GLU
233
A
GLU
51
HELX_P
A
GLU
241
A
GLU
59
1
2
9
RNA BINDING PROTEIN
RNA-binding protein, hnRNP, AUF1, telomere, DNA-binding protein, RNA BINDING PROTEIN
HNRPD_HUMAN
UNP
1
Q14103
85
159
1IQT
183
257
Q14103
A
1
1
75
4
anti-parallel
anti-parallel
anti-parallel
A
SER
210
A
SER
28
A
ILE
211
A
ILE
29
A
CYS
226
A
CYS
44
A
THR
229
A
THR
47
A
ILE
184
A
ILE
2
A
VAL
186
A
VAL
4
A
ILE
254
A
ILE
72
A
VAL
256
A
VAL
74