0.008842
0.005105
0.000000
0.000000
0.010210
0.000000
0.000000
0.000000
0.007015
0.00000
0.00000
0.00000
Komori, H.
Masui, R.
Kuramitsu, S.
Yokoyama, S.
Shibata, T.
Inoue, Y.
Miki, K.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
113.099
113.099
142.554
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C27 H33 N9 O15 P2
785.550
FLAVIN-ADENINE DINUCLEOTIDE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C5 H6 N2 O2
126.113
THYMINE
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
R
P
N
89
N
O
N
90
N
O
N
91
N
O
N
92
N
C
N
93
R
C
N
94
N
O
N
95
S
C
N
96
N
O
N
97
R
C
N
98
N
O
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
N
N
111
N
C
N
112
N
O
N
113
N
N
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
N
Y
118
N
C
Y
119
N
C
Y
120
N
C
N
121
N
C
Y
122
N
C
N
123
N
C
Y
124
N
C
Y
125
N
C
N
126
N
N
N
127
N
C
N
128
N
C
N
129
S
C
N
130
N
O
N
131
S
C
N
132
N
O
N
133
R
C
N
134
N
O
N
135
N
C
N
136
N
O
N
137
R
P
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
N
C
N
179
N
C
N
180
N
C
N
181
N
O
N
182
N
N
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
O
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
N
C
Y
228
N
C
Y
229
N
N
Y
230
N
C
Y
231
N
C
Y
232
N
N
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
S
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
N
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
C
N
322
N
S
N
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
P
N
360
N
O
N
361
N
O
N
362
N
O
N
363
N
O
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
N
369
N
C
N
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
N
386
N
O
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
N
C
N
397
N
O
N
398
N
N
N
399
N
C
N
400
N
O
N
401
N
C
N
402
N
C
N
403
N
C
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
R
C
N
415
N
O
N
416
N
C
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
N
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
N
C
Y
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
N
465
N
O
N
466
N
O
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
N
N
479
S
C
N
480
N
C
N
481
N
O
N
482
N
C
N
483
N
C
N
484
N
C
N
485
N
O
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
Y
132
N
doub
Y
133
N
sing
Y
134
N
sing
N
135
N
sing
N
136
N
sing
Y
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
Y
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
Y
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
Y
231
N
sing
Y
232
N
doub
Y
233
N
doub
N
234
N
sing
Y
235
N
sing
N
236
N
sing
Y
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
Y
339
N
doub
Y
340
N
sing
Y
341
N
sing
N
342
N
sing
Y
343
N
doub
N
344
N
sing
Y
345
N
doub
N
346
N
sing
Y
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
Y
427
N
doub
Y
428
N
sing
Y
429
N
sing
N
430
N
sing
Y
431
N
doub
Y
432
N
sing
Y
433
N
sing
N
434
N
sing
Y
435
N
sing
Y
436
N
doub
N
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
Y
455
N
doub
Y
456
N
sing
Y
457
N
sing
N
458
N
sing
Y
459
N
doub
N
460
N
sing
Y
461
N
doub
N
462
N
sing
Y
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
doub
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
13560
13565
10.1073/pnas.241371398
11707580
Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism.
2001
10.2210/pdb1iqu/pdb
pdb_00001iqu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
CCD
2000-03-03
MARRESEARCH
a fix-exit double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.7
1.0
BL44B2
SPring-8
0.7
SYNCHROTRON
SPRING-8 BEAMLINE BL44B2
47973.938
photolyase
4.1.99.3
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
126.113
THYMINE
1
syn
non-polymer
785.550
FLAVIN-ADENINE DINUCLEOTIDE
1
syn
non-polymer
18.015
water
68
nat
water
DNA photolyase
no
no
MGPLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLKTTPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVP
EAARRLKAKAVYALTSHTPYGRYRDGRVREALPVPLHLLPAPHLLPPDLPRAYRVYTPFSRLYRGAAPPLPPPEALPKGP
EEGEIPREDPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLSPYFALGVLSPRLAAWEAERRGGEGARK
WVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFA
VKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYAPKDPV
VDLEEARRRYLRLARDLARG
MGPLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLKTTPRRRAWFLENVRALREAYRARGGALWVLEGLPWEKVP
EAARRLKAKAVYALTSHTPYGRYRDGRVREALPVPLHLLPAPHLLPPDLPRAYRVYTPFSRLYRGAAPPLPPPEALPKGP
EEGEIPREDPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLSPYFALGVLSPRLAAWEAERRGGEGARK
WVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFA
VKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYAPKDPV
VDLEEARRRYLRLARDLARG
A
ttk003000732.2
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermus
Escherichia
sample
274
Thermus thermophilus
562
Escherichia coli
PLASMID
PET3A
1
2.74
55.12
VAPOR DIFFUSION, HANGING DROP
4.6
sodium acetate, Ammonium phosphate, lithium sulfate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
RIKEN Structural Genomics/Proteomics Initiative
RSGI
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-05-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-10-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1IQR contains the same protein with FAD and PO4
Y
PDBJ
Y
PDBJ
2001-08-03
REL
PO4
PHOSPHATE ION
TDR
THYMINE
FAD
FLAVIN-ADENINE DINUCLEOTIDE
HOH
water
1IQR
1IQR (native structure)
PDB
experimental model
PO4
422
2
PO4
PO4
422
A
TDR
500
3
TDR
TDR
500
A
FAD
421
4
FAD
FAD
421
A
HOH
1
5
HOH
HOH
501
A
HOH
2
5
HOH
HOH
502
A
HOH
3
5
HOH
HOH
503
A
HOH
4
5
HOH
HOH
504
A
HOH
5
5
HOH
HOH
505
A
HOH
6
5
HOH
HOH
506
A
HOH
7
5
HOH
HOH
507
A
HOH
8
5
HOH
HOH
508
A
HOH
9
5
HOH
HOH
509
A
HOH
10
5
HOH
HOH
510
A
HOH
11
5
HOH
HOH
511
A
HOH
12
5
HOH
HOH
512
A
HOH
13
5
HOH
HOH
513
A
HOH
14
5
HOH
HOH
514
A
HOH
15
5
HOH
HOH
515
A
HOH
16
5
HOH
HOH
516
A
HOH
17
5
HOH
HOH
517
A
HOH
18
5
HOH
HOH
518
A
HOH
19
5
HOH
HOH
519
A
HOH
20
5
HOH
HOH
520
A
HOH
21
5
HOH
HOH
521
A
HOH
22
5
HOH
HOH
522
A
HOH
23
5
HOH
HOH
523
A
HOH
24
5
HOH
HOH
524
A
HOH
25
5
HOH
HOH
525
A
HOH
26
5
HOH
HOH
526
A
HOH
27
5
HOH
HOH
527
A
HOH
28
5
HOH
HOH
528
A
HOH
29
5
HOH
HOH
529
A
HOH
30
5
HOH
HOH
530
A
HOH
31
5
HOH
HOH
531
A
HOH
32
5
HOH
HOH
532
A
HOH
33
5
HOH
HOH
533
A
HOH
34
5
HOH
HOH
534
A
HOH
35
5
HOH
HOH
535
A
HOH
36
5
HOH
HOH
536
A
HOH
37
5
HOH
HOH
537
A
HOH
38
5
HOH
HOH
538
A
HOH
39
5
HOH
HOH
539
A
HOH
40
5
HOH
HOH
540
A
HOH
41
5
HOH
HOH
541
A
HOH
42
5
HOH
HOH
542
A
HOH
43
5
HOH
HOH
543
A
HOH
44
5
HOH
HOH
544
A
HOH
45
5
HOH
HOH
545
A
HOH
46
5
HOH
HOH
546
A
HOH
47
5
HOH
HOH
547
A
HOH
48
5
HOH
HOH
548
A
HOH
49
5
HOH
HOH
549
A
HOH
50
5
HOH
HOH
550
A
HOH
51
5
HOH
HOH
551
A
HOH
52
5
HOH
HOH
552
A
HOH
53
5
HOH
HOH
553
A
HOH
54
5
HOH
HOH
554
A
HOH
55
5
HOH
HOH
555
A
HOH
56
5
HOH
HOH
556
A
HOH
57
5
HOH
HOH
557
A
HOH
58
5
HOH
HOH
558
A
HOH
59
5
HOH
HOH
559
A
HOH
60
5
HOH
HOH
560
A
HOH
61
5
HOH
HOH
561
A
HOH
62
5
HOH
HOH
562
A
HOH
63
5
HOH
HOH
563
A
HOH
64
5
HOH
HOH
564
A
HOH
65
5
HOH
HOH
565
A
HOH
66
5
HOH
HOH
566
A
HOH
67
5
HOH
HOH
567
A
HOH
68
5
HOH
HOH
568
A
n
1
1
A
GLY
2
n
2
GLY
2
A
PRO
3
n
3
PRO
3
A
LEU
4
n
4
LEU
4
A
LEU
5
n
5
LEU
5
A
VAL
6
n
6
VAL
6
A
TRP
7
n
7
TRP
7
A
HIS
8
n
8
HIS
8
A
ARG
9
n
9
ARG
9
A
GLY
10
n
10
GLY
10
A
ASP
11
n
11
ASP
11
A
LEU
12
n
12
LEU
12
A
ARG
13
n
13
ARG
13
A
LEU
14
n
14
LEU
14
A
HIS
15
n
15
HIS
15
A
ASP
16
n
16
ASP
16
A
HIS
17
n
17
HIS
17
A
PRO
18
n
18
PRO
18
A
ALA
19
n
19
ALA
19
A
LEU
20
n
20
LEU
20
A
LEU
21
n
21
LEU
21
A
GLU
22
n
22
GLU
22
A
ALA
23
n
23
ALA
23
A
LEU
24
n
24
LEU
24
A
ALA
25
n
25
ALA
25
A
ARG
26
n
26
ARG
26
A
GLY
27
n
27
GLY
27
A
PRO
28
n
28
PRO
28
A
VAL
29
n
29
VAL
29
A
VAL
30
n
30
VAL
30
A
GLY
31
n
31
GLY
31
A
LEU
32
n
32
LEU
32
A
VAL
33
n
33
VAL
33
A
VAL
34
n
34
VAL
34
A
LEU
35
n
35
LEU
35
A
ASP
36
n
36
ASP
36
A
PRO
37
n
37
PRO
37
A
ASN
38
n
38
ASN
38
A
ASN
39
n
39
ASN
39
A
LEU
40
n
40
LEU
40
A
LYS
41
n
41
LYS
41
A
THR
42
n
42
THR
42
A
THR
43
n
43
THR
43
A
PRO
44
n
44
PRO
44
A
ARG
45
n
45
ARG
45
A
ARG
46
n
46
ARG
46
A
ARG
47
n
47
ARG
47
A
ALA
48
n
48
ALA
48
A
TRP
49
n
49
TRP
49
A
PHE
50
n
50
PHE
50
A
LEU
51
n
51
LEU
51
A
GLU
52
n
52
GLU
52
A
ASN
53
n
53
ASN
53
A
VAL
54
n
54
VAL
54
A
ARG
55
n
55
ARG
55
A
ALA
56
n
56
ALA
56
A
LEU
57
n
57
LEU
57
A
ARG
58
n
58
ARG
58
A
GLU
59
n
59
GLU
59
A
ALA
60
n
60
ALA
60
A
TYR
61
n
61
TYR
61
A
ARG
62
n
62
ARG
62
A
ALA
63
n
63
ALA
63
A
ARG
64
n
64
ARG
64
A
GLY
65
n
65
GLY
65
A
GLY
66
n
66
GLY
66
A
ALA
67
n
67
ALA
67
A
LEU
68
n
68
LEU
68
A
TRP
69
n
69
TRP
69
A
VAL
70
n
70
VAL
70
A
LEU
71
n
71
LEU
71
A
GLU
72
n
72
GLU
72
A
GLY
73
n
73
GLY
73
A
LEU
74
n
74
LEU
74
A
PRO
75
n
75
PRO
75
A
TRP
76
n
76
TRP
76
A
GLU
77
n
77
GLU
77
A
LYS
78
n
78
LYS
78
A
VAL
79
n
79
VAL
79
A
PRO
80
n
80
PRO
80
A
GLU
81
n
81
GLU
81
A
ALA
82
n
82
ALA
82
A
ALA
83
n
83
ALA
83
A
ARG
84
n
84
ARG
84
A
ARG
85
n
85
ARG
85
A
LEU
86
n
86
LEU
86
A
LYS
87
n
87
LYS
87
A
ALA
88
n
88
ALA
88
A
LYS
89
n
89
LYS
89
A
ALA
90
n
90
ALA
90
A
VAL
91
n
91
VAL
91
A
TYR
92
n
92
TYR
92
A
ALA
93
n
93
ALA
93
A
LEU
94
n
94
LEU
94
A
THR
95
n
95
THR
95
A
SER
96
n
96
SER
96
A
HIS
97
n
97
HIS
97
A
THR
98
n
98
THR
98
A
PRO
99
n
99
PRO
99
A
TYR
100
n
100
TYR
100
A
GLY
101
n
101
GLY
101
A
ARG
102
n
102
ARG
102
A
TYR
103
n
103
TYR
103
A
ARG
104
n
104
ARG
104
A
ASP
105
n
105
ASP
105
A
GLY
106
n
106
GLY
106
A
ARG
107
n
107
ARG
107
A
VAL
108
n
108
VAL
108
A
ARG
109
n
109
ARG
109
A
GLU
110
n
110
GLU
110
A
ALA
111
n
111
ALA
111
A
LEU
112
n
112
LEU
112
A
PRO
113
n
113
PRO
113
A
VAL
114
n
114
VAL
114
A
PRO
115
n
115
PRO
115
A
LEU
116
n
116
LEU
116
A
HIS
117
n
117
HIS
117
A
LEU
118
n
118
LEU
118
A
LEU
119
n
119
LEU
119
A
PRO
120
n
120
PRO
120
A
ALA
121
n
121
ALA
121
A
PRO
122
n
122
PRO
122
A
HIS
123
n
123
HIS
123
A
LEU
124
n
124
LEU
124
A
LEU
125
n
125
LEU
125
A
PRO
126
n
126
PRO
126
A
PRO
127
n
127
PRO
127
A
ASP
128
n
128
ASP
128
A
LEU
129
n
129
LEU
129
A
PRO
130
n
130
PRO
130
A
ARG
131
n
131
ARG
131
A
ALA
132
n
132
ALA
132
A
TYR
133
n
133
TYR
133
A
ARG
134
n
134
ARG
134
A
VAL
135
n
135
VAL
135
A
TYR
136
n
136
TYR
136
A
THR
137
n
137
THR
137
A
PRO
138
n
138
PRO
138
A
PHE
139
n
139
PHE
139
A
SER
140
n
140
SER
140
A
ARG
141
n
141
ARG
141
A
LEU
142
n
142
LEU
142
A
TYR
143
n
143
TYR
143
A
ARG
144
n
144
ARG
144
A
GLY
145
n
145
GLY
145
A
ALA
146
n
146
ALA
146
A
ALA
147
n
147
ALA
147
A
PRO
148
n
148
PRO
148
A
PRO
149
n
149
PRO
149
A
LEU
150
n
150
LEU
150
A
PRO
151
n
151
PRO
151
A
PRO
152
n
152
PRO
152
A
PRO
153
n
153
PRO
153
A
GLU
154
n
154
GLU
154
A
ALA
155
n
155
ALA
155
A
LEU
156
n
156
LEU
156
A
PRO
157
n
157
PRO
157
A
LYS
158
n
158
LYS
158
A
GLY
159
n
159
GLY
159
A
PRO
160
n
160
PRO
160
A
GLU
161
n
161
GLU
161
A
GLU
162
n
162
GLU
162
A
GLY
163
n
163
GLY
163
A
GLU
164
n
164
GLU
164
A
ILE
165
n
165
ILE
165
A
PRO
166
n
166
PRO
166
A
ARG
167
n
167
ARG
167
A
GLU
168
n
168
GLU
168
A
ASP
169
n
169
ASP
169
A
PRO
170
n
170
PRO
170
A
GLY
171
n
171
GLY
171
A
LEU
172
n
172
LEU
172
A
PRO
173
n
173
PRO
173
A
LEU
174
n
174
LEU
174
A
PRO
175
n
175
PRO
175
A
GLU
176
n
176
GLU
176
A
PRO
177
n
177
PRO
177
A
GLY
178
n
178
GLY
178
A
GLU
179
n
179
GLU
179
A
GLU
180
n
180
GLU
180
A
ALA
181
n
181
ALA
181
A
ALA
182
n
182
ALA
182
A
LEU
183
n
183
LEU
183
A
ALA
184
n
184
ALA
184
A
GLY
185
n
185
GLY
185
A
LEU
186
n
186
LEU
186
A
ARG
187
n
187
ARG
187
A
ALA
188
n
188
ALA
188
A
PHE
189
n
189
PHE
189
A
LEU
190
n
190
LEU
190
A
GLU
191
n
191
GLU
191
A
ALA
192
n
192
ALA
192
A
LYS
193
n
193
LYS
193
A
LEU
194
n
194
LEU
194
A
PRO
195
n
195
PRO
195
A
ARG
196
n
196
ARG
196
A
TYR
197
n
197
TYR
197
A
ALA
198
n
198
ALA
198
A
GLU
199
n
199
GLU
199
A
GLU
200
n
200
GLU
200
A
ARG
201
n
201
ARG
201
A
ASP
202
n
202
ASP
202
A
ARG
203
n
203
ARG
203
A
LEU
204
n
204
LEU
204
A
ASP
205
n
205
ASP
205
A
GLY
206
n
206
GLY
206
A
GLU
207
n
207
GLU
207
A
GLY
208
n
208
GLY
208
A
GLY
209
n
209
GLY
209
A
SER
210
n
210
SER
210
A
ARG
211
n
211
ARG
211
A
LEU
212
n
212
LEU
212
A
SER
213
n
213
SER
213
A
PRO
214
n
214
PRO
214
A
TYR
215
n
215
TYR
215
A
PHE
216
n
216
PHE
216
A
ALA
217
n
217
ALA
217
A
LEU
218
n
218
LEU
218
A
GLY
219
n
219
GLY
219
A
VAL
220
n
220
VAL
220
A
LEU
221
n
221
LEU
221
A
SER
222
n
222
SER
222
A
PRO
223
n
223
PRO
223
A
ARG
224
n
224
ARG
224
A
LEU
225
n
225
LEU
225
A
ALA
226
n
226
ALA
226
A
ALA
227
n
227
ALA
227
A
TRP
228
n
228
TRP
228
A
GLU
229
n
229
GLU
229
A
ALA
230
n
230
ALA
230
A
GLU
231
n
231
GLU
231
A
ARG
232
n
232
ARG
232
A
ARG
233
n
233
ARG
233
A
GLY
234
n
234
GLY
234
A
GLY
235
n
235
GLY
235
A
GLU
236
n
236
GLU
236
A
GLY
237
n
237
GLY
237
A
ALA
238
n
238
ALA
238
A
ARG
239
n
239
ARG
239
A
LYS
240
n
240
LYS
240
A
TRP
241
n
241
TRP
241
A
VAL
242
n
242
VAL
242
A
ALA
243
n
243
ALA
243
A
GLU
244
n
244
GLU
244
A
LEU
245
n
245
LEU
245
A
LEU
246
n
246
LEU
246
A
TRP
247
n
247
TRP
247
A
ARG
248
n
248
ARG
248
A
ASP
249
n
249
ASP
249
A
PHE
250
n
250
PHE
250
A
SER
251
n
251
SER
251
A
TYR
252
n
252
TYR
252
A
HIS
253
n
253
HIS
253
A
LEU
254
n
254
LEU
254
A
LEU
255
n
255
LEU
255
A
TYR
256
n
256
TYR
256
A
HIS
257
n
257
HIS
257
A
PHE
258
n
258
PHE
258
A
PRO
259
n
259
PRO
259
A
TRP
260
n
260
TRP
260
A
MET
261
n
261
MET
261
A
ALA
262
n
262
ALA
262
A
GLU
263
n
263
GLU
263
A
ARG
264
n
264
ARG
264
A
PRO
265
n
265
PRO
265
A
LEU
266
n
266
LEU
266
A
ASP
267
n
267
ASP
267
A
PRO
268
n
268
PRO
268
A
ARG
269
n
269
ARG
269
A
PHE
270
n
270
PHE
270
A
GLN
271
n
271
GLN
271
A
ALA
272
n
272
ALA
272
A
PHE
273
n
273
PHE
273
A
PRO
274
n
274
PRO
274
A
TRP
275
n
275
TRP
275
A
GLN
276
n
276
GLN
276
A
GLU
277
n
277
GLU
277
A
ASP
278
n
278
ASP
278
A
GLU
279
n
279
GLU
279
A
ALA
280
n
280
ALA
280
A
LEU
281
n
281
LEU
281
A
PHE
282
n
282
PHE
282
A
GLN
283
n
283
GLN
283
A
ALA
284
n
284
ALA
284
A
TRP
285
n
285
TRP
285
A
TYR
286
n
286
TYR
286
A
GLU
287
n
287
GLU
287
A
GLY
288
n
288
GLY
288
A
LYS
289
n
289
LYS
289
A
THR
290
n
290
THR
290
A
GLY
291
n
291
GLY
291
A
VAL
292
n
292
VAL
292
A
PRO
293
n
293
PRO
293
A
LEU
294
n
294
LEU
294
A
VAL
295
n
295
VAL
295
A
ASP
296
n
296
ASP
296
A
ALA
297
n
297
ALA
297
A
ALA
298
n
298
ALA
298
A
MET
299
n
299
MET
299
A
ARG
300
n
300
ARG
300
A
GLU
301
n
301
GLU
301
A
LEU
302
n
302
LEU
302
A
HIS
303
n
303
HIS
303
A
ALA
304
n
304
ALA
304
A
THR
305
n
305
THR
305
A
GLY
306
n
306
GLY
306
A
PHE
307
n
307
PHE
307
A
LEU
308
n
308
LEU
308
A
SER
309
n
309
SER
309
A
ASN
310
n
310
ASN
310
A
ARG
311
n
311
ARG
311
A
ALA
312
n
312
ALA
312
A
ARG
313
n
313
ARG
313
A
MET
314
n
314
MET
314
A
ASN
315
n
315
ASN
315
A
ALA
316
n
316
ALA
316
A
ALA
317
n
317
ALA
317
A
GLN
318
n
318
GLN
318
A
PHE
319
n
319
PHE
319
A
ALA
320
n
320
ALA
320
A
VAL
321
n
321
VAL
321
A
LYS
322
n
322
LYS
322
A
HIS
323
n
323
HIS
323
A
LEU
324
n
324
LEU
324
A
LEU
325
n
325
LEU
325
A
LEU
326
n
326
LEU
326
A
PRO
327
n
327
PRO
327
A
TRP
328
n
328
TRP
328
A
LYS
329
n
329
LYS
329
A
ARG
330
n
330
ARG
330
A
CYS
331
n
331
CYS
331
A
GLU
332
n
332
GLU
332
A
GLU
333
n
333
GLU
333
A
ALA
334
n
334
ALA
334
A
PHE
335
n
335
PHE
335
A
ARG
336
n
336
ARG
336
A
HIS
337
n
337
HIS
337
A
LEU
338
n
338
LEU
338
A
LEU
339
n
339
LEU
339
A
LEU
340
n
340
LEU
340
A
ASP
341
n
341
ASP
341
A
GLY
342
n
342
GLY
342
A
ASP
343
n
343
ASP
343
A
ARG
344
n
344
ARG
344
A
ALA
345
n
345
ALA
345
A
VAL
346
n
346
VAL
346
A
ASN
347
n
347
ASN
347
A
LEU
348
n
348
LEU
348
A
GLN
349
n
349
GLN
349
A
GLY
350
n
350
GLY
350
A
TRP
351
n
351
TRP
351
A
GLN
352
n
352
GLN
352
A
TRP
353
n
353
TRP
353
A
ALA
354
n
354
ALA
354
A
GLY
355
n
355
GLY
355
A
GLY
356
n
356
GLY
356
A
LEU
357
n
357
LEU
357
A
GLY
358
n
358
GLY
358
A
VAL
359
n
359
VAL
359
A
ASP
360
n
360
ASP
360
A
ALA
361
n
361
ALA
361
A
ALA
362
n
362
ALA
362
A
PRO
363
n
363
PRO
363
A
TYR
364
n
364
TYR
364
A
PHE
365
n
365
PHE
365
A
ARG
366
n
366
ARG
366
A
VAL
367
n
367
VAL
367
A
PHE
368
n
368
PHE
368
A
ASN
369
n
369
ASN
369
A
PRO
370
n
370
PRO
370
A
VAL
371
n
371
VAL
371
A
LEU
372
n
372
LEU
372
A
GLN
373
n
373
GLN
373
A
GLY
374
n
374
GLY
374
A
GLU
375
n
375
GLU
375
A
ARG
376
n
376
ARG
376
A
HIS
377
n
377
HIS
377
A
ASP
378
n
378
ASP
378
A
PRO
379
n
379
PRO
379
A
GLU
380
n
380
GLU
380
A
GLY
381
n
381
GLY
381
A
ARG
382
n
382
ARG
382
A
TRP
383
n
383
TRP
383
A
LEU
384
n
384
LEU
384
A
LYS
385
n
385
LYS
385
A
ARG
386
n
386
ARG
386
A
TRP
387
n
387
TRP
387
A
ALA
388
n
388
ALA
388
A
PRO
389
n
389
PRO
389
A
GLU
390
n
390
GLU
390
A
TYR
391
n
391
TYR
391
A
PRO
392
n
392
PRO
392
A
SER
393
n
393
SER
393
A
TYR
394
n
394
TYR
394
A
ALA
395
n
395
ALA
395
A
PRO
396
n
396
PRO
396
A
LYS
397
n
397
LYS
397
A
ASP
398
n
398
ASP
398
A
PRO
399
n
399
PRO
399
A
VAL
400
n
400
VAL
400
A
VAL
401
n
401
VAL
401
A
ASP
402
n
402
ASP
402
A
LEU
403
n
403
LEU
403
A
GLU
404
n
404
GLU
404
A
GLU
405
n
405
GLU
405
A
ALA
406
n
406
ALA
406
A
ARG
407
n
407
ARG
407
A
ARG
408
n
408
ARG
408
A
ARG
409
n
409
ARG
409
A
TYR
410
n
410
TYR
410
A
LEU
411
n
411
LEU
411
A
ARG
412
n
412
ARG
412
A
LEU
413
n
413
LEU
413
A
ALA
414
n
414
ALA
414
A
ARG
415
n
415
ARG
415
A
ASP
416
n
416
ASP
416
A
n
417
417
A
n
418
418
A
n
419
419
A
n
420
420
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
71
A
O
LEU
71
A
N
LEU
35
A
N
LEU
35
A
O
VAL
30
A
O
VAL
30
A
N
VAL
6
A
N
VAL
6
A
N
LEU
5
A
N
LEU
5
A
O
TYR
92
A
O
TYR
92
A
N
VAL
91
A
N
VAL
91
A
O
HIS
117
A
O
HIS
117
1
A
MET
1
A
MET
1
1
Y
1
A
LEU
417
A
LEU
417
1
Y
1
A
ALA
418
A
ALA
418
1
Y
1
A
ARG
419
A
ARG
419
1
Y
1
A
GLY
420
A
GLY
420
1
Y
1
A
ARG
9
-120.82
-116.26
1
A
ASP
11
-151.13
59.08
1
A
ASP
128
-92.21
36.30
1
A
PRO
130
-46.56
-71.48
1
A
PRO
166
-49.68
156.39
1
A
TRP
260
-59.31
-9.77
1
A
ARG
269
-65.87
7.99
1
A
PRO
370
-33.49
-32.77
1
A
ASP
378
-163.49
108.92
1
A
PRO
379
-47.23
-110.80
1
A
GLU
380
-69.09
19.74
1
A
TYR
394
-78.32
34.57
1
A
PRO
396
-53.40
98.74
1
A
ASP
398
80.29
67.38
1
A
ARG
415
-67.67
38.91
0.2430000
0.2110000
0.2120000
0.2120000
2.2
25
1289
25481
25481
5.00
RANDOM
1
0
MOLECULAR REPLACEMENT
1IQR (native structure)
Engh & Huber
2.2
25
68
3500
67
0
3365
0.006
1.3
2.2
25
1IQU
25481
25481
1.0
1.0
1
91.2
0.3360000
2.2
2.28
69.8
phasing
MLPHARE
refinement
CNS
1.0
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
Crystal structure of photolyase-thymine complex
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
HIS
17
A
HIS
17
HELX_P
A
ALA
25
A
ALA
25
1
1
9
A
ASP
36
A
ASP
36
HELX_P
A
LYS
41
A
LYS
41
1
2
6
A
THR
43
A
THR
43
HELX_P
A
ARG
64
A
ARG
64
1
3
22
A
LEU
74
A
LEU
74
HELX_P
A
LYS
87
A
LYS
87
1
4
14
A
THR
98
A
THR
98
HELX_P
A
LEU
112
A
LEU
112
1
5
15
A
VAL
135
A
VAL
135
HELX_P
A
ARG
141
A
ARG
141
1
6
7
A
GLY
178
A
GLY
178
HELX_P
A
LYS
193
A
LYS
193
1
7
16
A
ARG
196
A
ARG
196
HELX_P
A
ARG
201
A
ARG
201
1
8
6
A
LEU
212
A
LEU
212
HELX_P
A
LEU
218
A
LEU
218
1
9
7
A
SER
222
A
SER
222
HELX_P
A
PHE
258
A
PHE
258
1
10
37
A
PRO
259
A
PRO
259
HELX_P
A
GLU
263
A
GLU
263
5
11
5
A
ASP
267
A
ASP
267
HELX_P
A
GLN
271
A
GLN
271
5
12
5
A
ASP
278
A
ASP
278
HELX_P
A
GLY
288
A
GLY
288
1
13
11
A
VAL
292
A
VAL
292
HELX_P
A
GLY
306
A
GLY
306
1
14
15
A
SER
309
A
SER
309
HELX_P
A
HIS
323
A
HIS
323
1
15
15
A
PRO
327
A
PRO
327
HELX_P
A
LEU
339
A
LEU
339
1
16
13
A
ASP
343
A
ASP
343
HELX_P
A
GLY
355
A
GLY
355
1
17
13
A
GLY
358
A
GLY
358
HELX_P
A
ALA
362
A
ALA
362
5
18
5
A
ASN
369
A
ASN
369
HELX_P
A
HIS
377
A
HIS
377
1
19
9
A
GLY
381
A
GLY
381
HELX_P
A
ALA
388
A
ALA
388
1
20
8
A
ASP
402
A
ASP
402
HELX_P
A
ARG
415
A
ARG
415
1
21
14
LYASE
DNA repair, Cyclobutane pyrimidine dimer (CPD), FAD, Photoreactivating Enzyme, DNA-binding, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, LYASE
PHR_THET8
UNP
1
P61497
1
420
1IQU
1
420
P61497
A
1
1
420
5
parallel
parallel
parallel
parallel
A
LEU
68
A
LEU
68
A
GLU
72
A
GLU
72
A
VAL
29
A
VAL
29
A
LEU
35
A
LEU
35
A
LEU
4
A
LEU
4
A
TRP
7
A
TRP
7
A
ALA
90
A
ALA
90
A
LEU
94
A
LEU
94
A
LEU
116
A
LEU
116
A
LEU
119
A
LEU
119
BINDING SITE FOR RESIDUE PO4 A 422
A
PO4
422
Software
6
BINDING SITE FOR RESIDUE TDR A 500
A
TDR
500
Software
6
BINDING SITE FOR RESIDUE FAD A 421
A
FAD
421
Software
29
A
ARG
9
A
ARG
9
6
1_555
A
GLY
10
A
GLY
10
6
1_555
A
SER
96
A
SER
96
6
1_555
A
ARG
104
A
ARG
104
6
1_555
A
HOH
563
E
HOH
6
1_555
A
HOH
564
E
HOH
6
1_555
A
TRP
247
A
TRP
247
6
1_555
A
ASN
310
A
ASN
310
6
1_555
A
MET
314
A
MET
314
6
1_555
A
GLN
349
A
GLN
349
6
1_555
A
TRP
353
A
TRP
353
6
1_555
A
FAD
421
D
FAD
6
1_555
A
TYR
197
A
TYR
197
29
1_555
A
GLY
209
A
GLY
209
29
1_555
A
SER
210
A
SER
210
29
1_555
A
ARG
211
A
ARG
211
29
1_555
A
LEU
212
A
LEU
212
29
1_555
A
SER
213
A
SER
213
29
1_555
A
PHE
216
A
PHE
216
29
1_555
A
TRP
241
A
TRP
241
29
1_555
A
GLU
244
A
GLU
244
29
1_555
A
LEU
245
A
LEU
245
29
1_555
A
TRP
247
A
TRP
247
29
1_555
A
ARG
248
A
ARG
248
29
1_555
A
PHE
307
A
PHE
307
29
1_555
A
ASN
310
A
ASN
310
29
1_555
A
ARG
313
A
ARG
313
29
1_555
A
MET
314
A
MET
314
29
1_555
A
ALA
317
A
ALA
317
29
1_555
A
ASP
341
A
ASP
341
29
1_555
A
GLY
342
A
GLY
342
29
1_555
A
ASP
343
A
ASP
343
29
1_555
A
VAL
346
A
VAL
346
29
1_555
A
ASN
347
A
ASN
347
29
1_555
A
GLN
349
A
GLN
349
29
1_555
A
GLY
350
A
GLY
350
29
1_555
A
TDR
500
C
TDR
29
1_555
A
HOH
505
E
HOH
29
1_555
A
HOH
522
E
HOH
29
1_555
A
HOH
539
E
HOH
29
1_555
A
HOH
561
E
HOH
29
1_555
178
P 61 2 2