0.007062 0.000000 0.000000 0.000000 0.007062 0.000000 0.000000 0.000000 0.007062 0.00000 0.00000 0.00000 Yamagata, A. Kakuta, Y. Masui, R. Fukuyama, K. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 90.00 141.600 141.600 141.600 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mn 2 54.938 MANGANESE (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N MN N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 S C N 273 N C N 274 N O N 275 N C N 276 N C N 277 N C N 278 N O N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C N 293 N O N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 R C N 307 N O N 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N N Y 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C N 357 N O N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C N 375 N C N 376 N C N 377 N O N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 99 5908 5912 10.1073/pnas.092547099 11972066 The crystal structure of exonuclease RecJ bound to Mn2+ ion suggests how its characteristic motifs are involved in exonuclease activity. 2002 UK Nucleic Acids Res. NARHAD 0389 0305-1048 29 4617 4624 10.1093/nar/29.22.4617 Overexpression, purification and characterization of RecJ protein from Thermus thermophilus HB8 and its core domain 2001 10.2210/pdb1ir6/pdb pdb_00001ir6 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-03-27 MARRESEARCH Si(111) double monochromator SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 BL41XU SPring-8 0.9795 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 45896.973 exonuclease RecJ catalytic domain 1 man polymer 54.938 MANGANESE (II) ION 1 syn non-polymer single-stranded DNA specific exonuclease RecJ no no FRRKEDLDPPLALLPLKGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLM ERVPEHLEASDLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLLLWALH ERLGLPPPLEYADLAAVGTIADVAPLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYTGKAVEVAFRIAPRINAASRLG EAEKALRLLLTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQADPEAKAIVLLDPEGHPGVMGIVASRILEATLRPV FLVAQGKGTVRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFKARVEAYAARFPDPVREVALLDLLPEPGL LPQVFRELALLEPYGEGNPEPLFL FRRKEDLDPPLALLPLKGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLM ERVPEHLEASDLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLLLWALH ERLGLPPPLEYADLAAVGTIADVAPLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYTGKAVEVAFRIAPRINAASRLG EAEKALRLLLTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQADPEAKAIVLLDPEGHPGVMGIVASRILEATLRPV FLVAQGKGTVRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFKARVEAYAARFPDPVREVALLDLLPEPGL LPQVFRELALLEPYGEGNPEPLFL A ttk003000716.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermus Escherichia sample 274 Thermus thermophilus 562 Escherichia coli PLASMID pET19b 1 5.15 76.14 VAPOR DIFFUSION, HANGING DROP 5.8 ammonium sulfate, sodium/potassium tartrate, sodium citrate, glycerol, manganese chloride, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 RIKEN Structural Genomics/Proteomics Initiative RSGI chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-05-15 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id SEQUENCE THERE ARE 2 DIFFERENCES BETWEEN THE DEPOSITORS DATA AND THE GENETIC SEQUENCE(S) IN THE 14595119 ENTRY. THERE IS NO QUESTION FROM THE ELECTRON DENSITY THAT these residues are not database sequence. Y PDBJ Y PDBJ 2001-09-11 REL REL MN MANGANESE (II) ION MN2 434 2 MN MN 1434 A n 1 40 A n 2 41 A n 3 42 A n 4 43 A n 5 44 A n 6 45 A n 7 46 A n 8 47 A n 9 48 A PRO 49 n 10 PRO 49 A LEU 50 n 11 LEU 50 A ALA 51 n 12 ALA 51 A LEU 52 n 13 LEU 52 A LEU 53 n 14 LEU 53 A PRO 54 n 15 PRO 54 A LEU 55 n 16 LEU 55 A LYS 56 n 17 LYS 56 A GLY 57 n 18 GLY 57 A LEU 58 n 19 LEU 58 A ARG 59 n 20 ARG 59 A GLU 60 n 21 GLU 60 A ALA 61 n 22 ALA 61 A ALA 62 n 23 ALA 62 A ALA 63 n 24 ALA 63 A LEU 64 n 25 LEU 64 A LEU 65 n 26 LEU 65 A GLU 66 n 27 GLU 66 A GLU 67 n 28 GLU 67 A ALA 68 n 29 ALA 68 A LEU 69 n 30 LEU 69 A ARG 70 n 31 ARG 70 A GLN 71 n 32 GLN 71 A GLY 72 n 33 GLY 72 A LYS 73 n 34 LYS 73 A ARG 74 n 35 ARG 74 A ILE 75 n 36 ILE 75 A ARG 76 n 37 ARG 76 A VAL 77 n 38 VAL 77 A HIS 78 n 39 HIS 78 A GLY 79 n 40 GLY 79 A ASP 80 n 41 ASP 80 A TYR 81 n 42 TYR 81 A ASP 82 n 43 ASP 82 A ALA 83 n 44 ALA 83 A ASP 84 n 45 ASP 84 A GLY 85 n 46 GLY 85 A LEU 86 n 47 LEU 86 A THR 87 n 48 THR 87 A GLY 88 n 49 GLY 88 A THR 89 n 50 THR 89 A ALA 90 n 51 ALA 90 A ILE 91 n 52 ILE 91 A LEU 92 n 53 LEU 92 A VAL 93 n 54 VAL 93 A ARG 94 n 55 ARG 94 A GLY 95 n 56 GLY 95 A LEU 96 n 57 LEU 96 A ALA 97 n 58 ALA 97 A ALA 98 n 59 ALA 98 A LEU 99 n 60 LEU 99 A GLY 100 n 61 GLY 100 A ALA 101 n 62 ALA 101 A ASP 102 n 63 ASP 102 A VAL 103 n 64 VAL 103 A HIS 104 n 65 HIS 104 A PRO 105 n 66 PRO 105 A PHE 106 n 67 PHE 106 A ILE 107 n 68 ILE 107 A PRO 108 n 69 PRO 108 A HIS 109 n 70 HIS 109 A ARG 110 n 71 ARG 110 A LEU 111 n 72 LEU 111 A GLU 112 n 73 GLU 112 A GLU 113 n 74 GLU 113 A GLY 114 n 75 GLY 114 A TYR 115 n 76 TYR 115 A GLY 116 n 77 GLY 116 A VAL 117 n 78 VAL 117 A LEU 118 n 79 LEU 118 A MET 119 n 80 MET 119 A GLU 120 n 81 GLU 120 A ARG 121 n 82 ARG 121 A VAL 122 n 83 VAL 122 A PRO 123 n 84 PRO 123 A GLU 124 n 85 GLU 124 A HIS 125 n 86 HIS 125 A LEU 126 n 87 LEU 126 A GLU 127 n 88 GLU 127 A ALA 128 n 89 ALA 128 A SER 129 n 90 SER 129 A ASP 130 n 91 ASP 130 A LEU 131 n 92 LEU 131 A PHE 132 n 93 PHE 132 A LEU 133 n 94 LEU 133 A THR 134 n 95 THR 134 A VAL 135 n 96 VAL 135 A ASP 136 n 97 ASP 136 A CYS 137 n 98 CYS 137 A GLY 138 n 99 GLY 138 A ILE 139 n 100 ILE 139 A THR 140 n 101 THR 140 A ASN 141 n 102 ASN 141 A HIS 142 n 103 HIS 142 A ALA 143 n 104 ALA 143 A GLU 144 n 105 GLU 144 A LEU 145 n 106 LEU 145 A ARG 146 n 107 ARG 146 A GLU 147 n 108 GLU 147 A LEU 148 n 109 LEU 148 A LEU 149 n 110 LEU 149 A GLU 150 n 111 GLU 150 A ASN 151 n 112 ASN 151 A GLY 152 n 113 GLY 152 A VAL 153 n 114 VAL 153 A GLU 154 n 115 GLU 154 A VAL 155 n 116 VAL 155 A ILE 156 n 117 ILE 156 A VAL 157 n 118 VAL 157 A THR 158 n 119 THR 158 A ASP 159 n 120 ASP 159 A HIS 160 n 121 HIS 160 A HIS 161 n 122 HIS 161 A THR 162 n 123 THR 162 A PRO 163 n 124 PRO 163 A GLY 164 n 125 GLY 164 A LYS 165 n 126 LYS 165 A THR 166 n 127 THR 166 A PRO 167 n 128 PRO 167 A PRO 168 n 129 PRO 168 A PRO 169 n 130 PRO 169 A GLY 170 n 131 GLY 170 A LEU 171 n 132 LEU 171 A VAL 172 n 133 VAL 172 A VAL 173 n 134 VAL 173 A HIS 174 n 135 HIS 174 A PRO 175 n 136 PRO 175 A ALA 176 n 137 ALA 176 A LEU 177 n 138 LEU 177 A THR 178 n 139 THR 178 A PRO 179 n 140 PRO 179 A ASP 180 n 141 ASP 180 A LEU 181 n 142 LEU 181 A LYS 182 n 143 LYS 182 A GLU 183 n 144 GLU 183 A LYS 184 n 145 LYS 184 A PRO 185 n 146 PRO 185 A THR 186 n 147 THR 186 A GLY 187 n 148 GLY 187 A ALA 188 n 149 ALA 188 A GLY 189 n 150 GLY 189 A VAL 190 n 151 VAL 190 A ALA 191 n 152 ALA 191 A PHE 192 n 153 PHE 192 A LEU 193 n 154 LEU 193 A LEU 194 n 155 LEU 194 A LEU 195 n 156 LEU 195 A TRP 196 n 157 TRP 196 A ALA 197 n 158 ALA 197 A LEU 198 n 159 LEU 198 A HIS 199 n 160 HIS 199 A GLU 200 n 161 GLU 200 A ARG 201 n 162 ARG 201 A LEU 202 n 163 LEU 202 A GLY 203 n 164 GLY 203 A LEU 204 n 165 LEU 204 A PRO 205 n 166 PRO 205 A PRO 206 n 167 PRO 206 A PRO 207 n 168 PRO 207 A LEU 208 n 169 LEU 208 A GLU 209 n 170 GLU 209 A TYR 210 n 171 TYR 210 A ALA 211 n 172 ALA 211 A ASP 212 n 173 ASP 212 A LEU 213 n 174 LEU 213 A ALA 214 n 175 ALA 214 A ALA 215 n 176 ALA 215 A VAL 216 n 177 VAL 216 A GLY 217 n 178 GLY 217 A THR 218 n 179 THR 218 A ILE 219 n 180 ILE 219 A ALA 220 n 181 ALA 220 A ASP 221 n 182 ASP 221 A VAL 222 n 183 VAL 222 A ALA 223 n 184 ALA 223 A PRO 224 n 185 PRO 224 A LEU 225 n 186 LEU 225 A TRP 226 n 187 TRP 226 A GLY 227 n 188 GLY 227 A TRP 228 n 189 TRP 228 A ASN 229 n 190 ASN 229 A ARG 230 n 191 ARG 230 A ALA 231 n 192 ALA 231 A LEU 232 n 193 LEU 232 A VAL 233 n 194 VAL 233 A LYS 234 n 195 LYS 234 A GLU 235 n 196 GLU 235 A GLY 236 n 197 GLY 236 A LEU 237 n 198 LEU 237 A ALA 238 n 199 ALA 238 A ARG 239 n 200 ARG 239 A ILE 240 n 201 ILE 240 A PRO 241 n 202 PRO 241 A ALA 242 n 203 ALA 242 A SER 243 n 204 SER 243 A SER 244 n 205 SER 244 A TRP 245 n 206 TRP 245 A VAL 246 n 207 VAL 246 A GLY 247 n 208 GLY 247 A LEU 248 n 209 LEU 248 A ARG 249 n 210 ARG 249 A LEU 250 n 211 LEU 250 A LEU 251 n 212 LEU 251 A ALA 252 n 213 ALA 252 A GLU 253 n 214 GLU 253 A ALA 254 n 215 ALA 254 A VAL 255 n 216 VAL 255 A GLY 256 n 217 GLY 256 A TYR 257 n 218 TYR 257 A THR 258 n 219 THR 258 A GLY 259 n 220 GLY 259 A LYS 260 n 221 LYS 260 A ALA 261 n 222 ALA 261 A VAL 262 n 223 VAL 262 A GLU 263 n 224 GLU 263 A VAL 264 n 225 VAL 264 A ALA 265 n 226 ALA 265 A PHE 266 n 227 PHE 266 A ARG 267 n 228 ARG 267 A ILE 268 n 229 ILE 268 A ALA 269 n 230 ALA 269 A PRO 270 n 231 PRO 270 A ARG 271 n 232 ARG 271 A ILE 272 n 233 ILE 272 A ASN 273 n 234 ASN 273 A ALA 274 n 235 ALA 274 A ALA 275 n 236 ALA 275 A SER 276 n 237 SER 276 A ARG 277 n 238 ARG 277 A LEU 278 n 239 LEU 278 A GLY 279 n 240 GLY 279 A GLU 280 n 241 GLU 280 A ALA 281 n 242 ALA 281 A GLU 282 n 243 GLU 282 A LYS 283 n 244 LYS 283 A ALA 284 n 245 ALA 284 A LEU 285 n 246 LEU 285 A ARG 286 n 247 ARG 286 A LEU 287 n 248 LEU 287 A LEU 288 n 249 LEU 288 A LEU 289 n 250 LEU 289 A THR 290 n 251 THR 290 A ASP 291 n 252 ASP 291 A ASP 292 n 253 ASP 292 A ALA 293 n 254 ALA 293 A ALA 294 n 255 ALA 294 A GLU 295 n 256 GLU 295 A ALA 296 n 257 ALA 296 A GLN 297 n 258 GLN 297 A ALA 298 n 259 ALA 298 A LEU 299 n 260 LEU 299 A VAL 300 n 261 VAL 300 A GLY 301 n 262 GLY 301 A GLU 302 n 263 GLU 302 A LEU 303 n 264 LEU 303 A HIS 304 n 265 HIS 304 A ARG 305 n 266 ARG 305 A LEU 306 n 267 LEU 306 A ASN 307 n 268 ASN 307 A ALA 308 n 269 ALA 308 A ARG 309 n 270 ARG 309 A ARG 310 n 271 ARG 310 A GLN 311 n 272 GLN 311 A THR 312 n 273 THR 312 A LEU 313 n 274 LEU 313 A GLU 314 n 275 GLU 314 A GLU 315 n 276 GLU 315 A ALA 316 n 277 ALA 316 A MET 317 n 278 MET 317 A LEU 318 n 279 LEU 318 A ARG 319 n 280 ARG 319 A LYS 320 n 281 LYS 320 A LEU 321 n 282 LEU 321 A LEU 322 n 283 LEU 322 A PRO 323 n 284 PRO 323 A GLN 324 n 285 GLN 324 A ALA 325 n 286 ALA 325 A ASP 326 n 287 ASP 326 A PRO 327 n 288 PRO 327 A GLU 328 n 289 GLU 328 A ALA 329 n 290 ALA 329 A LYS 330 n 291 LYS 330 A ALA 331 n 292 ALA 331 A ILE 332 n 293 ILE 332 A VAL 333 n 294 VAL 333 A LEU 334 n 295 LEU 334 A LEU 335 n 296 LEU 335 A ASP 336 n 297 ASP 336 A PRO 337 n 298 PRO 337 A GLU 338 n 299 GLU 338 A GLY 339 n 300 GLY 339 A HIS 340 n 301 HIS 340 A PRO 341 n 302 PRO 341 A GLY 342 n 303 GLY 342 A VAL 343 n 304 VAL 343 A MET 344 n 305 MET 344 A GLY 345 n 306 GLY 345 A ILE 346 n 307 ILE 346 A VAL 347 n 308 VAL 347 A ALA 348 n 309 ALA 348 A SER 349 n 310 SER 349 A ARG 350 n 311 ARG 350 A ILE 351 n 312 ILE 351 A LEU 352 n 313 LEU 352 A GLU 353 n 314 GLU 353 A ALA 354 n 315 ALA 354 A THR 355 n 316 THR 355 A LEU 356 n 317 LEU 356 A ARG 357 n 318 ARG 357 A PRO 358 n 319 PRO 358 A VAL 359 n 320 VAL 359 A PHE 360 n 321 PHE 360 A LEU 361 n 322 LEU 361 A VAL 362 n 323 VAL 362 A ALA 363 n 324 ALA 363 A GLN 364 n 325 GLN 364 A GLY 365 n 326 GLY 365 A LYS 366 n 327 LYS 366 A GLY 367 n 328 GLY 367 A THR 368 n 329 THR 368 A VAL 369 n 330 VAL 369 A ARG 370 n 331 ARG 370 A SER 371 n 332 SER 371 A LEU 372 n 333 LEU 372 A ALA 373 n 334 ALA 373 A PRO 374 n 335 PRO 374 A ILE 375 n 336 ILE 375 A SER 376 n 337 SER 376 A ALA 377 n 338 ALA 377 A VAL 378 n 339 VAL 378 A GLU 379 n 340 GLU 379 A ALA 380 n 341 ALA 380 A LEU 381 n 342 LEU 381 A ARG 382 n 343 ARG 382 A SER 383 n 344 SER 383 A ALA 384 n 345 ALA 384 A GLU 385 n 346 GLU 385 A ASP 386 n 347 ASP 386 A LEU 387 n 348 LEU 387 A LEU 388 n 349 LEU 388 A LEU 389 n 350 LEU 389 A ARG 390 n 351 ARG 390 A TYR 391 n 352 TYR 391 A GLY 392 n 353 GLY 392 A GLY 393 n 354 GLY 393 A HIS 394 n 355 HIS 394 A LYS 395 n 356 LYS 395 A GLU 396 n 357 GLU 396 A ALA 397 n 358 ALA 397 A ALA 398 n 359 ALA 398 A GLY 399 n 360 GLY 399 A PHE 400 n 361 PHE 400 A ALA 401 n 362 ALA 401 A MET 402 n 363 MET 402 A ASP 403 n 364 ASP 403 A GLU 404 n 365 GLU 404 A ALA 405 n 366 ALA 405 A LEU 406 n 367 LEU 406 A PHE 407 n 368 PHE 407 A PRO 408 n 369 PRO 408 A ALA 409 n 370 ALA 409 A PHE 410 n 371 PHE 410 A LYS 411 n 372 LYS 411 A ALA 412 n 373 ALA 412 A ARG 413 n 374 ARG 413 A VAL 414 n 375 VAL 414 A GLU 415 n 376 GLU 415 A ALA 416 n 377 ALA 416 A TYR 417 n 378 TYR 417 A ALA 418 n 379 ALA 418 A ALA 419 n 380 ALA 419 A ARG 420 n 381 ARG 420 A PHE 421 n 382 PHE 421 A PRO 422 n 383 PRO 422 A ASP 423 n 384 ASP 423 A PRO 424 n 385 PRO 424 A VAL 425 n 386 VAL 425 A ARG 426 n 387 ARG 426 A GLU 427 n 388 GLU 427 A VAL 428 n 389 VAL 428 A ALA 429 n 390 ALA 429 A LEU 430 n 391 LEU 430 A LEU 431 n 392 LEU 431 A ASP 432 n 393 ASP 432 A LEU 433 n 394 LEU 433 A n 395 434 A n 396 435 A n 397 436 A n 398 437 A n 399 438 A n 400 439 A n 401 440 A n 402 441 A n 403 442 A n 404 443 A n 405 444 A n 406 445 A n 407 446 A n 408 447 A n 409 448 A n 410 449 A n 411 450 A n 412 451 A n 413 452 A n 414 453 A n 415 454 A n 416 455 A n 417 456 A n 418 457 A n 419 458 A n 420 459 A n 421 460 A n 422 461 A n 423 462 A n 424 463 A author_defined_assembly 1 monomeric A ASP 84 A OD2 ASP 45 1_555 A MN 1434 B MN MN 1_555 A ASP 136 A OD1 ASP 97 1_555 80.8 A ASP 84 A OD2 ASP 45 1_555 A MN 1434 B MN MN 1_555 A ASP 136 A OD2 ASP 97 1_555 91.6 A ASP 136 A OD1 ASP 97 1_555 A MN 1434 B MN MN 1_555 A ASP 136 A OD2 ASP 97 1_555 49.5 A ASP 84 A OD2 ASP 45 1_555 A MN 1434 B MN MN 1_555 A HIS 160 A NE2 HIS 121 1_555 95.4 A ASP 136 A OD1 ASP 97 1_555 A MN 1434 B MN MN 1_555 A HIS 160 A NE2 HIS 121 1_555 85.4 A ASP 136 A OD2 ASP 97 1_555 A MN 1434 B MN MN 1_555 A HIS 160 A NE2 HIS 121 1_555 132.4 A ASP 84 A OD2 ASP 45 1_555 A MN 1434 B MN MN 1_555 A ASP 221 A OD2 ASP 182 1_555 63.7 A ASP 136 A OD1 ASP 97 1_555 A MN 1434 B MN MN 1_555 A ASP 221 A OD2 ASP 182 1_555 140.9 A ASP 136 A OD2 ASP 97 1_555 A MN 1434 B MN MN 1_555 A ASP 221 A OD2 ASP 182 1_555 112.6 A HIS 160 A NE2 HIS 121 1_555 A MN 1434 B MN MN 1_555 A ASP 221 A OD2 ASP 182 1_555 112.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASP 102 A O ASP 63 A N ILE 75 A N ILE 36 A N ARG 76 A N ARG 37 A O LEU 133 A O LEU 94 A N PHE 132 A N PHE 93 A O GLU 154 A O GLU 115 A N VAL 157 A N VAL 118 A O VAL 173 A O VAL 134 A N ILE 332 A N ILE 293 A O PHE 360 A O PHE 321 A N VAL 359 A N VAL 320 A O ARG 370 A O ARG 331 A N GLY 367 A N GLY 328 A O PHE 400 A O PHE 361 A O GLY 399 A O GLY 360 A N GLY 392 A N GLY 353 1 A PHE 40 A PHE 1 1 Y 1 A ARG 41 A ARG 2 1 Y 1 A ARG 42 A ARG 3 1 Y 1 A LYS 43 A LYS 4 1 Y 1 A GLU 44 A GLU 5 1 Y 1 A ASP 45 A ASP 6 1 Y 1 A LEU 46 A LEU 7 1 Y 1 A ASP 47 A ASP 8 1 Y 1 A PRO 48 A PRO 9 1 Y 1 A LEU 434 A LEU 395 1 Y 1 A PRO 435 A PRO 396 1 Y 1 A GLU 436 A GLU 397 1 Y 1 A PRO 437 A PRO 398 1 Y 1 A GLY 438 A GLY 399 1 Y 1 A LEU 439 A LEU 400 1 Y 1 A LEU 440 A LEU 401 1 Y 1 A PRO 441 A PRO 402 1 Y 1 A GLN 442 A GLN 403 1 Y 1 A VAL 443 A VAL 404 1 Y 1 A PHE 444 A PHE 405 1 Y 1 A ARG 445 A ARG 406 1 Y 1 A GLU 446 A GLU 407 1 Y 1 A LEU 447 A LEU 408 1 Y 1 A ALA 448 A ALA 409 1 Y 1 A LEU 449 A LEU 410 1 Y 1 A LEU 450 A LEU 411 1 Y 1 A GLU 451 A GLU 412 1 Y 1 A PRO 452 A PRO 413 1 Y 1 A TYR 453 A TYR 414 1 Y 1 A GLY 454 A GLY 415 1 Y 1 A GLU 455 A GLU 416 1 Y 1 A GLY 456 A GLY 417 1 Y 1 A ASN 457 A ASN 418 1 Y 1 A PRO 458 A PRO 419 1 Y 1 A GLU 459 A GLU 420 1 Y 1 A PRO 460 A PRO 421 1 Y 1 A LEU 461 A LEU 422 1 Y 1 A PHE 462 A PHE 423 1 Y 1 A LEU 463 A LEU 424 1 Y 1 A LEU 52 -61.62 78.64 1 A PRO 54 -24.36 -98.26 1 A LEU 55 71.01 108.24 1 A LEU 99 -89.42 32.32 1 A ASP 102 -104.52 79.64 1 A ILE 139 -39.58 -8.47 1 A ASN 141 -96.42 40.14 1 A HIS 142 -37.73 -25.49 1 A LEU 149 -78.86 -86.28 1 A GLU 150 -14.99 -39.20 1 A HIS 160 -153.59 6.92 1 A PRO 179 -9.71 -89.06 1 A ASP 180 -103.81 54.62 1 A LYS 182 -140.53 51.34 1 A GLU 200 -51.07 -72.61 1 A LEU 202 79.13 -21.41 1 A VAL 222 38.31 55.22 1 A SER 243 -78.26 -165.97 1 A GLU 280 -140.08 29.41 1 A LEU 289 -106.17 -63.21 1 A THR 290 -4.35 -55.14 1 A ALA 294 -56.82 -77.54 1 A ALA 325 -57.13 -94.28 1 A ASP 326 84.70 98.61 1 A GLU 338 -118.35 77.24 1 A GLN 364 64.90 -138.70 1 A LEU 372 -163.54 -166.23 1 A ALA 373 35.49 -124.46 1 A ALA 384 66.04 -9.66 1 A TYR 391 171.42 143.67 1 A HIS 394 -137.65 -158.84 1 A PHE 400 -172.68 -175.72 1 A PHE 421 74.13 150.12 1 A PRO 422 -66.95 -168.02 1 A GLU 427 -175.42 -60.92 1 A LEU 430 60.91 -15.59 PROTEIN_REP.PARAM PROTEIN.TOP ION.PARAM ION.TOP 62.6 0.00 0.00 0.00 0.00 0.00 0.00 0.2590000 0.008 0.2280000 0.2280000 0.2280000 2.90 19.83 1008 20777 20777 4.9 98.3 RANDOM 418520.34 0.000000 1 RESTRAINED THROUGHOUT 0.0 single-wavelength anomalous dispersion Engh & Huber FLAT MODEL 34.0741 0.326039 0.45 0.40 5.00 0.54 0.53 2.90 19.83 0 2920 1 0 2919 0.008 1.5 21.8 0.98 0.3900000 0.032 0.3620000 3.08 147 3145 6 4.5 94.4 2.90 57.808 1IR6 21198 21198 0.0 0.0 0.0490000 1 99.8 2.90 3.08 0.2790000 100 refinement CNS data reduction DENZO data scaling SCALEPACK phasing CNS Crystal structure of exonuclease RecJ bound to manganese 1 N N 2 N N A GLY 57 A GLY 18 HELX_P A GLN 71 A GLN 32 1 1 15 A ASP 82 A ASP 43 HELX_P A LEU 99 A LEU 60 1 2 18 A LEU 118 A LEU 79 HELX_P A GLU 120 A GLU 81 5 3 3 A ARG 121 A ARG 82 HELX_P A GLU 127 A GLU 88 1 4 7 A ASN 141 A ASN 102 HELX_P A ALA 143 A ALA 104 5 5 3 A GLU 144 A GLU 105 HELX_P A LEU 149 A LEU 110 1 6 6 A HIS 174 A HIS 135 HELX_P A THR 178 A THR 139 5 7 5 A THR 186 A THR 147 HELX_P A ARG 201 A ARG 162 1 8 16 A PRO 207 A PRO 168 HELX_P A GLU 209 A GLU 170 5 9 3 A TYR 210 A TYR 171 HELX_P A ASP 221 A ASP 182 1 10 12 A GLY 227 A GLY 188 HELX_P A ILE 240 A ILE 201 1 11 14 A TRP 245 A TRP 206 HELX_P A VAL 255 A VAL 216 1 12 11 A ALA 261 A ALA 222 HELX_P A ARG 267 A ARG 228 1 13 7 A ARG 267 A ARG 228 HELX_P A LEU 278 A LEU 239 1 14 12 A GLU 280 A GLU 241 HELX_P A THR 290 A THR 251 1 15 11 A ASP 292 A ASP 253 HELX_P A LEU 322 A LEU 283 1 16 31 A PRO 323 A PRO 284 HELX_P A ALA 325 A ALA 286 5 17 3 A HIS 340 A HIS 301 HELX_P A LEU 356 A LEU 317 1 18 17 A SER 376 A SER 337 HELX_P A SER 383 A SER 344 1 19 8 A ALA 384 A ALA 345 HELX_P A LEU 388 A LEU 349 5 20 5 A ASP 403 A ASP 364 HELX_P A ALA 405 A ALA 366 5 21 3 A LEU 406 A LEU 367 HELX_P A ARG 420 A ARG 381 1 22 15 metalc 2.386 A ASP 84 A OD2 ASP 45 1_555 A MN 1434 B MN MN 1_555 metalc 2.631 A ASP 136 A OD1 ASP 97 1_555 A MN 1434 B MN MN 1_555 metalc 2.644 A ASP 136 A OD2 ASP 97 1_555 A MN 1434 B MN MN 1_555 metalc 2.242 A HIS 160 A NE2 HIS 121 1_555 A MN 1434 B MN MN 1_555 metalc 2.501 A ASP 221 A OD2 ASP 182 1_555 A MN 1434 B MN MN 1_555 HYDROLASE manganese, DNA repair, DNA recombination, nuclease, single-stranded DNA, two domains interconnected by alpha-helix, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, HYDROLASE Q93R48_THETH UNP 1 Q93R48 40 463 1IR6 40 463 Q93R48 A 1 1 424 1 SER SEE REMARK 999 PRO 168 1IR6 A Q93R48 UNP 168 129 1 VAL SEE REMARK 999 ALA 191 1IR6 A Q93R48 UNP 191 152 5 5 parallel parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel A ASP 102 A ASP 63 A PHE 106 A PHE 67 A ARG 74 A ARG 35 A HIS 78 A HIS 39 A LEU 131 A LEU 92 A THR 134 A THR 95 A GLU 154 A GLU 115 A THR 158 A THR 119 A LEU 171 A LEU 132 A VAL 173 A VAL 134 A ILE 332 A ILE 293 A LEU 335 A LEU 296 A VAL 359 A VAL 320 A ALA 363 A ALA 324 A LYS 366 A LYS 327 A ARG 370 A ARG 331 A ALA 397 A ALA 358 A ALA 401 A ALA 362 A ARG 390 A ARG 351 A GLY 393 A GLY 354 BINDING SITE FOR RESIDUE MN A 1434 A MN 1434 Software 5 A ASP 84 A ASP 45 5 1_555 A ASP 136 A ASP 97 5 1_555 A HIS 160 A HIS 121 5 1_555 A HIS 161 A HIS 122 5 1_555 A ASP 221 A ASP 182 5 1_555 198 P 21 3