0.015267
0.008814
0.000000
0.000000
0.017629
0.000000
0.000000
0.000000
0.005417
0.00000
0.00000
0.00000
Miyanaga, A.
Fushinobu, S.
Ito, K.
Wakagi, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
65.501
65.501
184.614
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Co 2
58.933
COBALT (II) ION
non-polymer
C3 H7 N O4 S
153.157
n
3-SULFINOALANINE
S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE
L-peptide linking
C3 H7 N O3 S
137.158
n
S-HYDROXYCYSTEINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CO
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
S
N
79
N
C
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
N
N
92
R
C
N
93
N
C
N
94
N
S
N
95
N
C
N
96
N
O
N
97
N
O
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
R
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
S
N
112
N
O
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
S
C
N
122
N
C
N
123
N
O
N
124
N
C
N
125
N
C
N
126
N
C
N
127
N
O
N
128
N
N
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
N
C
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
N
C
N
161
N
C
N
162
N
O
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
Y
174
N
C
Y
175
N
N
Y
176
N
C
Y
177
N
C
Y
178
N
N
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
S
C
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
N
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
N
267
N
C
N
268
N
S
N
269
N
C
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
O
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
R
C
N
341
N
O
N
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
N
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
N
391
N
O
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
N
N
405
S
C
N
406
N
C
N
407
N
O
N
408
N
C
N
409
N
C
N
410
N
C
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
Y
169
N
sing
Y
170
N
doub
Y
171
N
doub
N
172
N
sing
Y
173
N
sing
N
174
N
sing
Y
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
Y
277
N
doub
Y
278
N
sing
Y
279
N
sing
N
280
N
sing
Y
281
N
doub
N
282
N
sing
Y
283
N
doub
N
284
N
sing
Y
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
288
1169
1174
10.1006/bbrc.2001.5897
11700034
Crystal structure of cobalt-containing nitrile hydratase.
2001
JA
J.FERMENT.BIOENG.
0922-338X
83
474
477
Cloning and Sequencing of a Nitrile Hydratase Gene from Pseudonocardia thermophila JCM3095
1997
10.2210/pdb1ire/pdb
pdb_00001ire
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2001-02-17
ADSC QUANTUM 4
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
BL-6A
Photon Factory
1.0
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
23219.592
Nitrile Hydratase
4.2.1.84
1
man
polymer
26170.148
Nitrile Hydratase
4.2.1.84
1
man
polymer
58.933
COBALT (II) ION
1
syn
non-polymer
18.015
water
324
nat
water
no
yes
MTENILRKSDEEIQKEITARVKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTEAC
KELGIGGLQGEDMMWVENTDEVHHVVVCTL(CSD)S(CSO)YPWPVLGLPPNWFKEPQYRSRVVREPRQLLKEEFGFEVP
PSKEIKVWDSSSEMRFVVLPQRPAGTDGWSEEELATLVTRESMIGVEPAKAV
MTENILRKSDEEIQKEITARVKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTEAC
KELGIGGLQGEDMMWVENTDEVHHVVVCTLCSCYPWPVLGLPPNWFKEPQYRSRVVREPRQLLKEEFGFEVPPSKEIKVW
DSSSEMRFVVLPQRPAGTDGWSEEELATLVTRESMIGVEPAKAV
A
polypeptide(L)
no
no
MNGVYDVGGTDGLGPINRPADEPVFRAEWEKVAFAMFPATFRAGFMGLDEFRFGIEQMNPAEYLESPYYWHWIRTYIHHG
VRTGKIDLEELERRTQYYRENPDAPLPEHEQKPELIEFVNQAVYGGLPASREVDRPPKFKEGDVVRFSTASPKGHARRAR
YVRGKTGTVVKHHGAYIYPDTAGNGLGECPEHLYTVRFTAQELWGPEGDPNSSVYYDCWEPYIELVDT
MNGVYDVGGTDGLGPINRPADEPVFRAEWEKVAFAMFPATFRAGFMGLDEFRFGIEQMNPAEYLESPYYWHWIRTYIHHG
VRTGKIDLEELERRTQYYRENPDAPLPEHEQKPELIEFVNQAVYGGLPASREVDRPPKFKEGDVVRFSTASPKGHARRAR
YVRGKTGTVVKHHGAYIYPDTAGNGLGECPEHLYTVRFTAQELWGPEGDPNSSVYYDCWEPYIELVDT
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Pseudonocardia
Escherichia
sample
1848
Pseudonocardia thermophila
562
Escherichia coli
HB101
PLASMID
pUC18
Pseudonocardia
Escherichia
sample
1848
Pseudonocardia thermophila
562
Escherichia coli
HB101
PLASMID
pUC18
1
2.31
46.83
VAPOR DIFFUSION, SITTING DROP
7.5
sodium citrate, HEPES-NaOH, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 278K
278
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2002-10-01
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-10-25
1
4
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
PDBJ
Y
PDBJ
2001-10-01
REL
REL
CO
COBALT (II) ION
HOH
water
2AHJ
PDB ENTRY 2AHJ
PDB
experimental model
CO
301
3
CO
CO
301
A
WAT
1
4
HOH
HOH
302
A
WAT
4
4
HOH
HOH
303
A
WAT
11
4
HOH
HOH
304
A
WAT
12
4
HOH
HOH
305
A
WAT
15
4
HOH
HOH
306
A
WAT
19
4
HOH
HOH
307
A
WAT
20
4
HOH
HOH
308
A
WAT
22
4
HOH
HOH
309
A
WAT
25
4
HOH
HOH
310
A
WAT
27
4
HOH
HOH
311
A
WAT
28
4
HOH
HOH
312
A
WAT
29
4
HOH
HOH
313
A
WAT
31
4
HOH
HOH
314
A
WAT
36
4
HOH
HOH
315
A
WAT
38
4
HOH
HOH
316
A
WAT
39
4
HOH
HOH
317
A
WAT
41
4
HOH
HOH
318
A
WAT
43
4
HOH
HOH
319
A
WAT
47
4
HOH
HOH
320
A
WAT
51
4
HOH
HOH
321
A
WAT
52
4
HOH
HOH
322
A
WAT
58
4
HOH
HOH
323
A
WAT
59
4
HOH
HOH
324
A
WAT
62
4
HOH
HOH
325
A
WAT
64
4
HOH
HOH
326
A
WAT
71
4
HOH
HOH
327
A
WAT
72
4
HOH
HOH
328
A
WAT
73
4
HOH
HOH
329
A
WAT
76
4
HOH
HOH
330
A
WAT
77
4
HOH
HOH
331
A
WAT
79
4
HOH
HOH
332
A
WAT
82
4
HOH
HOH
333
A
WAT
83
4
HOH
HOH
334
A
WAT
88
4
HOH
HOH
335
A
WAT
98
4
HOH
HOH
336
A
WAT
101
4
HOH
HOH
337
A
WAT
102
4
HOH
HOH
338
A
WAT
103
4
HOH
HOH
339
A
WAT
104
4
HOH
HOH
340
A
WAT
105
4
HOH
HOH
341
A
WAT
108
4
HOH
HOH
342
A
WAT
109
4
HOH
HOH
343
A
WAT
111
4
HOH
HOH
344
A
WAT
112
4
HOH
HOH
345
A
WAT
113
4
HOH
HOH
346
A
WAT
116
4
HOH
HOH
347
A
WAT
117
4
HOH
HOH
348
A
WAT
119
4
HOH
HOH
349
A
WAT
120
4
HOH
HOH
350
A
WAT
122
4
HOH
HOH
351
A
WAT
124
4
HOH
HOH
352
A
WAT
125
4
HOH
HOH
353
A
WAT
126
4
HOH
HOH
354
A
WAT
131
4
HOH
HOH
355
A
WAT
133
4
HOH
HOH
356
A
WAT
134
4
HOH
HOH
357
A
WAT
135
4
HOH
HOH
358
A
WAT
137
4
HOH
HOH
359
A
WAT
138
4
HOH
HOH
360
A
WAT
142
4
HOH
HOH
361
A
WAT
144
4
HOH
HOH
362
A
WAT
146
4
HOH
HOH
363
A
WAT
149
4
HOH
HOH
364
A
WAT
152
4
HOH
HOH
365
A
WAT
154
4
HOH
HOH
366
A
WAT
157
4
HOH
HOH
367
A
WAT
160
4
HOH
HOH
368
A
WAT
161
4
HOH
HOH
369
A
WAT
162
4
HOH
HOH
370
A
WAT
165
4
HOH
HOH
371
A
WAT
168
4
HOH
HOH
372
A
WAT
170
4
HOH
HOH
373
A
WAT
174
4
HOH
HOH
374
A
WAT
175
4
HOH
HOH
375
A
WAT
178
4
HOH
HOH
376
A
WAT
179
4
HOH
HOH
377
A
WAT
184
4
HOH
HOH
378
A
WAT
185
4
HOH
HOH
379
A
WAT
187
4
HOH
HOH
380
A
WAT
190
4
HOH
HOH
381
A
WAT
191
4
HOH
HOH
382
A
WAT
195
4
HOH
HOH
383
A
WAT
196
4
HOH
HOH
384
A
WAT
198
4
HOH
HOH
385
A
WAT
206
4
HOH
HOH
386
A
WAT
207
4
HOH
HOH
387
A
WAT
210
4
HOH
HOH
388
A
WAT
211
4
HOH
HOH
389
A
WAT
212
4
HOH
HOH
390
A
WAT
214
4
HOH
HOH
391
A
WAT
217
4
HOH
HOH
392
A
WAT
219
4
HOH
HOH
393
A
WAT
221
4
HOH
HOH
394
A
WAT
225
4
HOH
HOH
395
A
WAT
227
4
HOH
HOH
396
A
WAT
234
4
HOH
HOH
397
A
WAT
235
4
HOH
HOH
398
A
WAT
236
4
HOH
HOH
399
A
WAT
237
4
HOH
HOH
400
A
WAT
244
4
HOH
HOH
401
A
WAT
248
4
HOH
HOH
402
A
WAT
250
4
HOH
HOH
403
A
WAT
251
4
HOH
HOH
404
A
WAT
253
4
HOH
HOH
405
A
WAT
255
4
HOH
HOH
406
A
WAT
259
4
HOH
HOH
407
A
WAT
263
4
HOH
HOH
408
A
WAT
264
4
HOH
HOH
409
A
WAT
269
4
HOH
HOH
410
A
WAT
274
4
HOH
HOH
411
A
WAT
280
4
HOH
HOH
412
A
WAT
283
4
HOH
HOH
413
A
WAT
286
4
HOH
HOH
414
A
WAT
288
4
HOH
HOH
415
A
WAT
292
4
HOH
HOH
416
A
WAT
294
4
HOH
HOH
417
A
WAT
295
4
HOH
HOH
418
A
WAT
296
4
HOH
HOH
419
A
WAT
297
4
HOH
HOH
420
A
WAT
298
4
HOH
HOH
421
A
WAT
299
4
HOH
HOH
422
A
WAT
305
4
HOH
HOH
423
A
WAT
307
4
HOH
HOH
424
A
WAT
308
4
HOH
HOH
425
A
WAT
309
4
HOH
HOH
426
A
WAT
311
4
HOH
HOH
427
A
WAT
312
4
HOH
HOH
428
A
WAT
314
4
HOH
HOH
429
A
WAT
316
4
HOH
HOH
430
A
WAT
317
4
HOH
HOH
431
A
WAT
318
4
HOH
HOH
432
A
WAT
323
4
HOH
HOH
433
A
WAT
2
4
HOH
HOH
229
B
WAT
3
4
HOH
HOH
230
B
WAT
5
4
HOH
HOH
231
B
WAT
6
4
HOH
HOH
232
B
WAT
7
4
HOH
HOH
233
B
WAT
8
4
HOH
HOH
234
B
WAT
9
4
HOH
HOH
235
B
WAT
10
4
HOH
HOH
236
B
WAT
13
4
HOH
HOH
237
B
WAT
14
4
HOH
HOH
238
B
WAT
16
4
HOH
HOH
239
B
WAT
17
4
HOH
HOH
240
B
WAT
18
4
HOH
HOH
241
B
WAT
21
4
HOH
HOH
242
B
WAT
23
4
HOH
HOH
243
B
WAT
24
4
HOH
HOH
244
B
WAT
26
4
HOH
HOH
245
B
WAT
30
4
HOH
HOH
246
B
WAT
32
4
HOH
HOH
247
B
WAT
33
4
HOH
HOH
248
B
WAT
34
4
HOH
HOH
249
B
WAT
35
4
HOH
HOH
250
B
WAT
37
4
HOH
HOH
251
B
WAT
40
4
HOH
HOH
252
B
WAT
42
4
HOH
HOH
253
B
WAT
44
4
HOH
HOH
254
B
WAT
45
4
HOH
HOH
255
B
WAT
46
4
HOH
HOH
256
B
WAT
48
4
HOH
HOH
257
B
WAT
49
4
HOH
HOH
258
B
WAT
50
4
HOH
HOH
259
B
WAT
53
4
HOH
HOH
260
B
WAT
54
4
HOH
HOH
261
B
WAT
55
4
HOH
HOH
262
B
WAT
56
4
HOH
HOH
263
B
WAT
57
4
HOH
HOH
264
B
WAT
60
4
HOH
HOH
265
B
WAT
61
4
HOH
HOH
266
B
WAT
63
4
HOH
HOH
267
B
WAT
65
4
HOH
HOH
268
B
WAT
66
4
HOH
HOH
269
B
WAT
67
4
HOH
HOH
270
B
WAT
68
4
HOH
HOH
271
B
WAT
69
4
HOH
HOH
272
B
WAT
70
4
HOH
HOH
273
B
WAT
74
4
HOH
HOH
274
B
WAT
75
4
HOH
HOH
275
B
WAT
78
4
HOH
HOH
276
B
WAT
80
4
HOH
HOH
277
B
WAT
81
4
HOH
HOH
278
B
WAT
84
4
HOH
HOH
279
B
WAT
85
4
HOH
HOH
280
B
WAT
86
4
HOH
HOH
281
B
WAT
87
4
HOH
HOH
282
B
WAT
89
4
HOH
HOH
283
B
WAT
90
4
HOH
HOH
284
B
WAT
91
4
HOH
HOH
285
B
WAT
92
4
HOH
HOH
286
B
WAT
93
4
HOH
HOH
287
B
WAT
94
4
HOH
HOH
288
B
WAT
95
4
HOH
HOH
289
B
WAT
96
4
HOH
HOH
290
B
WAT
97
4
HOH
HOH
291
B
WAT
99
4
HOH
HOH
292
B
WAT
100
4
HOH
HOH
293
B
WAT
106
4
HOH
HOH
294
B
WAT
107
4
HOH
HOH
295
B
WAT
110
4
HOH
HOH
296
B
WAT
114
4
HOH
HOH
297
B
WAT
115
4
HOH
HOH
298
B
WAT
118
4
HOH
HOH
299
B
WAT
121
4
HOH
HOH
300
B
WAT
123
4
HOH
HOH
301
B
WAT
127
4
HOH
HOH
302
B
WAT
128
4
HOH
HOH
303
B
WAT
129
4
HOH
HOH
304
B
WAT
130
4
HOH
HOH
305
B
WAT
132
4
HOH
HOH
306
B
WAT
136
4
HOH
HOH
307
B
WAT
139
4
HOH
HOH
308
B
WAT
140
4
HOH
HOH
309
B
WAT
141
4
HOH
HOH
310
B
WAT
143
4
HOH
HOH
311
B
WAT
145
4
HOH
HOH
312
B
WAT
147
4
HOH
HOH
313
B
WAT
148
4
HOH
HOH
314
B
WAT
150
4
HOH
HOH
315
B
WAT
151
4
HOH
HOH
316
B
WAT
153
4
HOH
HOH
317
B
WAT
155
4
HOH
HOH
318
B
WAT
156
4
HOH
HOH
319
B
WAT
158
4
HOH
HOH
320
B
WAT
159
4
HOH
HOH
321
B
WAT
163
4
HOH
HOH
322
B
WAT
164
4
HOH
HOH
323
B
WAT
166
4
HOH
HOH
324
B
WAT
167
4
HOH
HOH
325
B
WAT
169
4
HOH
HOH
326
B
WAT
171
4
HOH
HOH
327
B
WAT
172
4
HOH
HOH
328
B
WAT
173
4
HOH
HOH
329
B
WAT
176
4
HOH
HOH
330
B
WAT
177
4
HOH
HOH
331
B
WAT
180
4
HOH
HOH
332
B
WAT
181
4
HOH
HOH
333
B
WAT
182
4
HOH
HOH
334
B
WAT
183
4
HOH
HOH
335
B
WAT
186
4
HOH
HOH
336
B
WAT
188
4
HOH
HOH
337
B
WAT
189
4
HOH
HOH
338
B
WAT
192
4
HOH
HOH
339
B
WAT
193
4
HOH
HOH
340
B
WAT
194
4
HOH
HOH
341
B
WAT
197
4
HOH
HOH
342
B
WAT
199
4
HOH
HOH
343
B
WAT
200
4
HOH
HOH
344
B
WAT
201
4
HOH
HOH
345
B
WAT
202
4
HOH
HOH
346
B
WAT
203
4
HOH
HOH
347
B
WAT
204
4
HOH
HOH
348
B
WAT
205
4
HOH
HOH
349
B
WAT
208
4
HOH
HOH
350
B
WAT
209
4
HOH
HOH
351
B
WAT
213
4
HOH
HOH
352
B
WAT
215
4
HOH
HOH
353
B
WAT
216
4
HOH
HOH
354
B
WAT
218
4
HOH
HOH
355
B
WAT
220
4
HOH
HOH
356
B
WAT
222
4
HOH
HOH
357
B
WAT
223
4
HOH
HOH
358
B
WAT
224
4
HOH
HOH
359
B
WAT
226
4
HOH
HOH
360
B
WAT
228
4
HOH
HOH
361
B
WAT
229
4
HOH
HOH
362
B
WAT
230
4
HOH
HOH
363
B
WAT
231
4
HOH
HOH
364
B
WAT
232
4
HOH
HOH
365
B
WAT
233
4
HOH
HOH
366
B
WAT
238
4
HOH
HOH
367
B
WAT
239
4
HOH
HOH
368
B
WAT
240
4
HOH
HOH
369
B
WAT
241
4
HOH
HOH
370
B
WAT
242
4
HOH
HOH
371
B
WAT
243
4
HOH
HOH
372
B
WAT
245
4
HOH
HOH
373
B
WAT
246
4
HOH
HOH
374
B
WAT
247
4
HOH
HOH
375
B
WAT
249
4
HOH
HOH
376
B
WAT
252
4
HOH
HOH
377
B
WAT
254
4
HOH
HOH
378
B
WAT
256
4
HOH
HOH
379
B
WAT
257
4
HOH
HOH
380
B
WAT
258
4
HOH
HOH
381
B
WAT
260
4
HOH
HOH
382
B
WAT
261
4
HOH
HOH
383
B
WAT
262
4
HOH
HOH
384
B
WAT
265
4
HOH
HOH
385
B
WAT
266
4
HOH
HOH
386
B
WAT
267
4
HOH
HOH
387
B
WAT
268
4
HOH
HOH
388
B
WAT
270
4
HOH
HOH
389
B
WAT
271
4
HOH
HOH
390
B
WAT
272
4
HOH
HOH
391
B
WAT
273
4
HOH
HOH
392
B
WAT
275
4
HOH
HOH
393
B
WAT
276
4
HOH
HOH
394
B
WAT
277
4
HOH
HOH
395
B
WAT
278
4
HOH
HOH
396
B
WAT
279
4
HOH
HOH
397
B
WAT
281
4
HOH
HOH
398
B
WAT
282
4
HOH
HOH
399
B
WAT
284
4
HOH
HOH
400
B
WAT
285
4
HOH
HOH
401
B
WAT
287
4
HOH
HOH
402
B
WAT
289
4
HOH
HOH
403
B
WAT
290
4
HOH
HOH
404
B
WAT
291
4
HOH
HOH
405
B
WAT
293
4
HOH
HOH
406
B
WAT
300
4
HOH
HOH
407
B
WAT
301
4
HOH
HOH
408
B
WAT
302
4
HOH
HOH
409
B
WAT
303
4
HOH
HOH
410
B
WAT
304
4
HOH
HOH
411
B
WAT
306
4
HOH
HOH
412
B
WAT
310
4
HOH
HOH
413
B
WAT
313
4
HOH
HOH
414
B
WAT
315
4
HOH
HOH
415
B
WAT
319
4
HOH
HOH
416
B
WAT
320
4
HOH
HOH
417
B
WAT
321
4
HOH
HOH
418
B
WAT
322
4
HOH
HOH
419
B
WAT
324
4
HOH
HOH
420
B
n
1
1
A
THR
2
n
2
THR
2
A
GLU
3
n
3
GLU
3
A
ASN
4
n
4
ASN
4
A
ILE
5
n
5
ILE
5
A
LEU
6
n
6
LEU
6
A
ARG
7
n
7
ARG
7
A
LYS
8
n
8
LYS
8
A
SER
9
n
9
SER
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
GLU
12
n
12
GLU
12
A
ILE
13
n
13
ILE
13
A
GLN
14
n
14
GLN
14
A
LYS
15
n
15
LYS
15
A
GLU
16
n
16
GLU
16
A
ILE
17
n
17
ILE
17
A
THR
18
n
18
THR
18
A
ALA
19
n
19
ALA
19
A
ARG
20
n
20
ARG
20
A
VAL
21
n
21
VAL
21
A
LYS
22
n
22
LYS
22
A
ALA
23
n
23
ALA
23
A
LEU
24
n
24
LEU
24
A
GLU
25
n
25
GLU
25
A
SER
26
n
26
SER
26
A
MET
27
n
27
MET
27
A
LEU
28
n
28
LEU
28
A
ILE
29
n
29
ILE
29
A
GLU
30
n
30
GLU
30
A
GLN
31
n
31
GLN
31
A
GLY
32
n
32
GLY
32
A
ILE
33
n
33
ILE
33
A
LEU
34
n
34
LEU
34
A
THR
35
n
35
THR
35
A
THR
36
n
36
THR
36
A
SER
37
n
37
SER
37
A
MET
38
n
38
MET
38
A
ILE
39
n
39
ILE
39
A
ASP
40
n
40
ASP
40
A
ARG
41
n
41
ARG
41
A
MET
42
n
42
MET
42
A
ALA
43
n
43
ALA
43
A
GLU
44
n
44
GLU
44
A
ILE
45
n
45
ILE
45
A
TYR
46
n
46
TYR
46
A
GLU
47
n
47
GLU
47
A
ASN
48
n
48
ASN
48
A
GLU
49
n
49
GLU
49
A
VAL
50
n
50
VAL
50
A
GLY
51
n
51
GLY
51
A
PRO
52
n
52
PRO
52
A
HIS
53
n
53
HIS
53
A
LEU
54
n
54
LEU
54
A
GLY
55
n
55
GLY
55
A
ALA
56
n
56
ALA
56
A
LYS
57
n
57
LYS
57
A
VAL
58
n
58
VAL
58
A
VAL
59
n
59
VAL
59
A
VAL
60
n
60
VAL
60
A
LYS
61
n
61
LYS
61
A
ALA
62
n
62
ALA
62
A
TRP
63
n
63
TRP
63
A
THR
64
n
64
THR
64
A
ASP
65
n
65
ASP
65
A
PRO
66
n
66
PRO
66
A
GLU
67
n
67
GLU
67
A
PHE
68
n
68
PHE
68
A
LYS
69
n
69
LYS
69
A
LYS
70
n
70
LYS
70
A
ARG
71
n
71
ARG
71
A
LEU
72
n
72
LEU
72
A
LEU
73
n
73
LEU
73
A
ALA
74
n
74
ALA
74
A
ASP
75
n
75
ASP
75
A
GLY
76
n
76
GLY
76
A
THR
77
n
77
THR
77
A
GLU
78
n
78
GLU
78
A
ALA
79
n
79
ALA
79
A
CYS
80
n
80
CYS
80
A
LYS
81
n
81
LYS
81
A
GLU
82
n
82
GLU
82
A
LEU
83
n
83
LEU
83
A
GLY
84
n
84
GLY
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
GLY
87
n
87
GLY
87
A
LEU
88
n
88
LEU
88
A
GLN
89
n
89
GLN
89
A
GLY
90
n
90
GLY
90
A
GLU
91
n
91
GLU
91
A
ASP
92
n
92
ASP
92
A
MET
93
n
93
MET
93
A
MET
94
n
94
MET
94
A
TRP
95
n
95
TRP
95
A
VAL
96
n
96
VAL
96
A
GLU
97
n
97
GLU
97
A
ASN
98
n
98
ASN
98
A
THR
99
n
99
THR
99
A
ASP
100
n
100
ASP
100
A
GLU
101
n
101
GLU
101
A
VAL
102
n
102
VAL
102
A
HIS
103
n
103
HIS
103
A
HIS
104
n
104
HIS
104
A
VAL
105
n
105
VAL
105
A
VAL
106
n
106
VAL
106
A
VAL
107
n
107
VAL
107
A
CYS
108
n
108
CYS
108
A
THR
109
n
109
THR
109
A
LEU
110
n
110
LEU
110
A
CSD
111
n
111
CSD
111
A
SER
112
n
112
SER
112
A
CEA
113
n
113
CSO
113
A
TYR
114
n
114
TYR
114
A
PRO
115
n
115
PRO
115
A
TRP
116
n
116
TRP
116
A
PRO
117
n
117
PRO
117
A
VAL
118
n
118
VAL
118
A
LEU
119
n
119
LEU
119
A
GLY
120
n
120
GLY
120
A
LEU
121
n
121
LEU
121
A
PRO
122
n
122
PRO
122
A
PRO
123
n
123
PRO
123
A
ASN
124
n
124
ASN
124
A
TRP
125
n
125
TRP
125
A
PHE
126
n
126
PHE
126
A
LYS
127
n
127
LYS
127
A
GLU
128
n
128
GLU
128
A
PRO
129
n
129
PRO
129
A
GLN
130
n
130
GLN
130
A
TYR
131
n
131
TYR
131
A
ARG
132
n
132
ARG
132
A
SER
133
n
133
SER
133
A
ARG
134
n
134
ARG
134
A
VAL
135
n
135
VAL
135
A
VAL
136
n
136
VAL
136
A
ARG
137
n
137
ARG
137
A
GLU
138
n
138
GLU
138
A
PRO
139
n
139
PRO
139
A
ARG
140
n
140
ARG
140
A
GLN
141
n
141
GLN
141
A
LEU
142
n
142
LEU
142
A
LEU
143
n
143
LEU
143
A
LYS
144
n
144
LYS
144
A
GLU
145
n
145
GLU
145
A
GLU
146
n
146
GLU
146
A
PHE
147
n
147
PHE
147
A
GLY
148
n
148
GLY
148
A
PHE
149
n
149
PHE
149
A
GLU
150
n
150
GLU
150
A
VAL
151
n
151
VAL
151
A
PRO
152
n
152
PRO
152
A
PRO
153
n
153
PRO
153
A
SER
154
n
154
SER
154
A
LYS
155
n
155
LYS
155
A
GLU
156
n
156
GLU
156
A
ILE
157
n
157
ILE
157
A
LYS
158
n
158
LYS
158
A
VAL
159
n
159
VAL
159
A
TRP
160
n
160
TRP
160
A
ASP
161
n
161
ASP
161
A
SER
162
n
162
SER
162
A
SER
163
n
163
SER
163
A
SER
164
n
164
SER
164
A
GLU
165
n
165
GLU
165
A
MET
166
n
166
MET
166
A
ARG
167
n
167
ARG
167
A
PHE
168
n
168
PHE
168
A
VAL
169
n
169
VAL
169
A
VAL
170
n
170
VAL
170
A
LEU
171
n
171
LEU
171
A
PRO
172
n
172
PRO
172
A
GLN
173
n
173
GLN
173
A
ARG
174
n
174
ARG
174
A
PRO
175
n
175
PRO
175
A
ALA
176
n
176
ALA
176
A
GLY
177
n
177
GLY
177
A
THR
178
n
178
THR
178
A
ASP
179
n
179
ASP
179
A
GLY
180
n
180
GLY
180
A
TRP
181
n
181
TRP
181
A
SER
182
n
182
SER
182
A
GLU
183
n
183
GLU
183
A
GLU
184
n
184
GLU
184
A
GLU
185
n
185
GLU
185
A
LEU
186
n
186
LEU
186
A
ALA
187
n
187
ALA
187
A
THR
188
n
188
THR
188
A
LEU
189
n
189
LEU
189
A
VAL
190
n
190
VAL
190
A
THR
191
n
191
THR
191
A
ARG
192
n
192
ARG
192
A
GLU
193
n
193
GLU
193
A
SER
194
n
194
SER
194
A
MET
195
n
195
MET
195
A
ILE
196
n
196
ILE
196
A
GLY
197
n
197
GLY
197
A
VAL
198
n
198
VAL
198
A
GLU
199
n
199
GLU
199
A
PRO
200
n
200
PRO
200
A
ALA
201
n
201
ALA
201
A
LYS
202
n
202
LYS
202
A
ALA
203
n
203
ALA
203
A
VAL
204
n
204
VAL
204
A
MET
1
n
1
MET
1
B
ASN
2
n
2
ASN
2
B
GLY
3
n
3
GLY
3
B
VAL
4
n
4
VAL
4
B
TYR
5
n
5
TYR
5
B
ASP
6
n
6
ASP
6
B
VAL
7
n
7
VAL
7
B
GLY
8
n
8
GLY
8
B
GLY
9
n
9
GLY
9
B
THR
10
n
10
THR
10
B
ASP
11
n
11
ASP
11
B
GLY
12
n
12
GLY
12
B
LEU
13
n
13
LEU
13
B
GLY
14
n
14
GLY
14
B
PRO
15
n
15
PRO
15
B
ILE
16
n
16
ILE
16
B
ASN
17
n
17
ASN
17
B
ARG
18
n
18
ARG
18
B
PRO
19
n
19
PRO
19
B
ALA
20
n
20
ALA
20
B
ASP
21
n
21
ASP
21
B
GLU
22
n
22
GLU
22
B
PRO
23
n
23
PRO
23
B
VAL
24
n
24
VAL
24
B
PHE
25
n
25
PHE
25
B
ARG
26
n
26
ARG
26
B
ALA
27
n
27
ALA
27
B
GLU
28
n
28
GLU
28
B
TRP
29
n
29
TRP
29
B
GLU
30
n
30
GLU
30
B
LYS
31
n
31
LYS
31
B
VAL
32
n
32
VAL
32
B
ALA
33
n
33
ALA
33
B
PHE
34
n
34
PHE
34
B
ALA
35
n
35
ALA
35
B
MET
36
n
36
MET
36
B
PHE
37
n
37
PHE
37
B
PRO
38
n
38
PRO
38
B
ALA
39
n
39
ALA
39
B
THR
40
n
40
THR
40
B
PHE
41
n
41
PHE
41
B
ARG
42
n
42
ARG
42
B
ALA
43
n
43
ALA
43
B
GLY
44
n
44
GLY
44
B
PHE
45
n
45
PHE
45
B
MET
46
n
46
MET
46
B
GLY
47
n
47
GLY
47
B
LEU
48
n
48
LEU
48
B
ASP
49
n
49
ASP
49
B
GLU
50
n
50
GLU
50
B
PHE
51
n
51
PHE
51
B
ARG
52
n
52
ARG
52
B
PHE
53
n
53
PHE
53
B
GLY
54
n
54
GLY
54
B
ILE
55
n
55
ILE
55
B
GLU
56
n
56
GLU
56
B
GLN
57
n
57
GLN
57
B
MET
58
n
58
MET
58
B
ASN
59
n
59
ASN
59
B
PRO
60
n
60
PRO
60
B
ALA
61
n
61
ALA
61
B
GLU
62
n
62
GLU
62
B
TYR
63
n
63
TYR
63
B
LEU
64
n
64
LEU
64
B
GLU
65
n
65
GLU
65
B
SER
66
n
66
SER
66
B
PRO
67
n
67
PRO
67
B
TYR
68
n
68
TYR
68
B
TYR
69
n
69
TYR
69
B
TRP
70
n
70
TRP
70
B
HIS
71
n
71
HIS
71
B
TRP
72
n
72
TRP
72
B
ILE
73
n
73
ILE
73
B
ARG
74
n
74
ARG
74
B
THR
75
n
75
THR
75
B
TYR
76
n
76
TYR
76
B
ILE
77
n
77
ILE
77
B
HIS
78
n
78
HIS
78
B
HIS
79
n
79
HIS
79
B
GLY
80
n
80
GLY
80
B
VAL
81
n
81
VAL
81
B
ARG
82
n
82
ARG
82
B
THR
83
n
83
THR
83
B
GLY
84
n
84
GLY
84
B
LYS
85
n
85
LYS
85
B
ILE
86
n
86
ILE
86
B
ASP
87
n
87
ASP
87
B
LEU
88
n
88
LEU
88
B
GLU
89
n
89
GLU
89
B
GLU
90
n
90
GLU
90
B
LEU
91
n
91
LEU
91
B
GLU
92
n
92
GLU
92
B
ARG
93
n
93
ARG
93
B
ARG
94
n
94
ARG
94
B
THR
95
n
95
THR
95
B
GLN
96
n
96
GLN
96
B
TYR
97
n
97
TYR
97
B
TYR
98
n
98
TYR
98
B
ARG
99
n
99
ARG
99
B
GLU
100
n
100
GLU
100
B
ASN
101
n
101
ASN
101
B
PRO
102
n
102
PRO
102
B
ASP
103
n
103
ASP
103
B
ALA
104
n
104
ALA
104
B
PRO
105
n
105
PRO
105
B
LEU
106
n
106
LEU
106
B
PRO
107
n
107
PRO
107
B
GLU
108
n
108
GLU
108
B
HIS
109
n
109
HIS
109
B
GLU
110
n
110
GLU
110
B
GLN
111
n
111
GLN
111
B
LYS
112
n
112
LYS
112
B
PRO
113
n
113
PRO
113
B
GLU
114
n
114
GLU
114
B
LEU
115
n
115
LEU
115
B
ILE
116
n
116
ILE
116
B
GLU
117
n
117
GLU
117
B
PHE
118
n
118
PHE
118
B
VAL
119
n
119
VAL
119
B
ASN
120
n
120
ASN
120
B
GLN
121
n
121
GLN
121
B
ALA
122
n
122
ALA
122
B
VAL
123
n
123
VAL
123
B
TYR
124
n
124
TYR
124
B
GLY
125
n
125
GLY
125
B
GLY
126
n
126
GLY
126
B
LEU
127
n
127
LEU
127
B
PRO
128
n
128
PRO
128
B
ALA
129
n
129
ALA
129
B
SER
130
n
130
SER
130
B
ARG
131
n
131
ARG
131
B
GLU
132
n
132
GLU
132
B
VAL
133
n
133
VAL
133
B
ASP
134
n
134
ASP
134
B
ARG
135
n
135
ARG
135
B
PRO
136
n
136
PRO
136
B
PRO
137
n
137
PRO
137
B
LYS
138
n
138
LYS
138
B
PHE
139
n
139
PHE
139
B
LYS
140
n
140
LYS
140
B
GLU
141
n
141
GLU
141
B
GLY
142
n
142
GLY
142
B
ASP
143
n
143
ASP
143
B
VAL
144
n
144
VAL
144
B
VAL
145
n
145
VAL
145
B
ARG
146
n
146
ARG
146
B
PHE
147
n
147
PHE
147
B
SER
148
n
148
SER
148
B
THR
149
n
149
THR
149
B
ALA
150
n
150
ALA
150
B
SER
151
n
151
SER
151
B
PRO
152
n
152
PRO
152
B
LYS
153
n
153
LYS
153
B
GLY
154
n
154
GLY
154
B
HIS
155
n
155
HIS
155
B
ALA
156
n
156
ALA
156
B
ARG
157
n
157
ARG
157
B
ARG
158
n
158
ARG
158
B
ALA
159
n
159
ALA
159
B
ARG
160
n
160
ARG
160
B
TYR
161
n
161
TYR
161
B
VAL
162
n
162
VAL
162
B
ARG
163
n
163
ARG
163
B
GLY
164
n
164
GLY
164
B
LYS
165
n
165
LYS
165
B
THR
166
n
166
THR
166
B
GLY
167
n
167
GLY
167
B
THR
168
n
168
THR
168
B
VAL
169
n
169
VAL
169
B
VAL
170
n
170
VAL
170
B
LYS
171
n
171
LYS
171
B
HIS
172
n
172
HIS
172
B
HIS
173
n
173
HIS
173
B
GLY
174
n
174
GLY
174
B
ALA
175
n
175
ALA
175
B
TYR
176
n
176
TYR
176
B
ILE
177
n
177
ILE
177
B
TYR
178
n
178
TYR
178
B
PRO
179
n
179
PRO
179
B
ASP
180
n
180
ASP
180
B
THR
181
n
181
THR
181
B
ALA
182
n
182
ALA
182
B
GLY
183
n
183
GLY
183
B
ASN
184
n
184
ASN
184
B
GLY
185
n
185
GLY
185
B
LEU
186
n
186
LEU
186
B
GLY
187
n
187
GLY
187
B
GLU
188
n
188
GLU
188
B
CYS
189
n
189
CYS
189
B
PRO
190
n
190
PRO
190
B
GLU
191
n
191
GLU
191
B
HIS
192
n
192
HIS
192
B
LEU
193
n
193
LEU
193
B
TYR
194
n
194
TYR
194
B
THR
195
n
195
THR
195
B
VAL
196
n
196
VAL
196
B
ARG
197
n
197
ARG
197
B
PHE
198
n
198
PHE
198
B
THR
199
n
199
THR
199
B
ALA
200
n
200
ALA
200
B
GLN
201
n
201
GLN
201
B
GLU
202
n
202
GLU
202
B
LEU
203
n
203
LEU
203
B
TRP
204
n
204
TRP
204
B
GLY
205
n
205
GLY
205
B
PRO
206
n
206
PRO
206
B
GLU
207
n
207
GLU
207
B
GLY
208
n
208
GLY
208
B
ASP
209
n
209
ASP
209
B
PRO
210
n
210
PRO
210
B
ASN
211
n
211
ASN
211
B
SER
212
n
212
SER
212
B
SER
213
n
213
SER
213
B
VAL
214
n
214
VAL
214
B
TYR
215
n
215
TYR
215
B
TYR
216
n
216
TYR
216
B
ASP
217
n
217
ASP
217
B
CYS
218
n
218
CYS
218
B
TRP
219
n
219
TRP
219
B
GLU
220
n
220
GLU
220
B
PRO
221
n
221
PRO
221
B
TYR
222
n
222
TYR
222
B
ILE
223
n
223
ILE
223
B
GLU
224
n
224
GLU
224
B
LEU
225
n
225
LEU
225
B
VAL
226
n
226
VAL
226
B
ASP
227
n
227
ASP
227
B
THR
228
n
228
THR
228
B
author_and_software_defined_assembly
PISA,PQS
4
tetrameric
21500
-135
32650
A
CYS
108
A
SG
CYS
108
1_555
A
CO
301
C
CO
CO
1_555
A
CSD
111
A
SG
CSD
111
1_555
95.8
A
CYS
108
A
SG
CYS
108
1_555
A
CO
301
C
CO
CO
1_555
A
SER
112
A
N
SER
112
1_555
97.6
A
CSD
111
A
SG
CSD
111
1_555
A
CO
301
C
CO
CO
1_555
A
SER
112
A
N
SER
112
1_555
97.1
A
CYS
108
A
SG
CYS
108
1_555
A
CO
301
C
CO
CO
1_555
A
CSO
113
A
N
CSO
113
1_555
96.7
A
CSD
111
A
SG
CSD
111
1_555
A
CO
301
C
CO
CO
1_555
A
CSO
113
A
N
CSO
113
1_555
167.0
A
SER
112
A
N
SER
112
1_555
A
CO
301
C
CO
CO
1_555
A
CSO
113
A
N
CSO
113
1_555
84.7
A
CYS
108
A
SG
CYS
108
1_555
A
CO
301
C
CO
CO
1_555
A
CSO
113
A
SG
CSO
113
1_555
85.4
A
CSD
111
A
SG
CSD
111
1_555
A
CO
301
C
CO
CO
1_555
A
CSO
113
A
SG
CSO
113
1_555
91.2
A
SER
112
A
N
SER
112
1_555
A
CO
301
C
CO
CO
1_555
A
CSO
113
A
SG
CSO
113
1_555
170.8
A
CSO
113
A
N
CSO
113
1_555
A
CO
301
C
CO
CO
1_555
A
CSO
113
A
SG
CSO
113
1_555
86.3
A
CYS
108
A
SG
CYS
108
1_555
A
CO
301
C
CO
CO
1_555
A
HOH
432
D
O
HOH
1_555
171.1
A
CSD
111
A
SG
CSD
111
1_555
A
CO
301
C
CO
CO
1_555
A
HOH
432
D
O
HOH
1_555
85.1
A
SER
112
A
N
SER
112
1_555
A
CO
301
C
CO
CO
1_555
A
HOH
432
D
O
HOH
1_555
91.1
A
CSO
113
A
N
CSO
113
1_555
A
CO
301
C
CO
CO
1_555
A
HOH
432
D
O
HOH
1_555
82.0
A
CSO
113
A
SG
CSO
113
1_555
A
CO
301
C
CO
CO
1_555
A
HOH
432
D
O
HOH
1_555
85.7
A
CSD
111
3-SULFINOALANINE
A
CSD
111
CYS
A
CSO
113
S-HYDROXYCYSTEINE
A
CSO
113
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASP
92
A
N
ASP
92
A
O
ARG
167
A
O
ARG
167
A
N
HIS
103
A
N
HIS
103
A
O
LYS
158
A
O
LYS
158
A
N
VAL
159
A
N
VAL
159
B
O
TYR
215
B
O
TYR
215
B
O
CYS
218
B
O
CYS
218
B
N
TYR
194
B
N
TYR
194
B
O
LEU
193
B
O
LEU
193
B
N
GLY
174
B
N
GLY
174
B
O
ALA
175
B
O
ALA
175
B
N
ARG
131
B
N
ARG
131
A
N
HIS
103
A
N
HIS
103
A
O
LYS
158
A
O
LYS
158
A
N
VAL
159
A
N
VAL
159
B
O
TYR
215
B
O
TYR
215
B
O
CYS
218
B
O
CYS
218
B
N
TYR
194
B
N
TYR
194
B
O
LEU
193
B
O
LEU
193
B
N
GLY
174
B
N
GLY
174
B
O
GLY
167
B
O
GLY
167
B
N
VAL
145
B
N
VAL
145
B
N
VAL
144
B
N
VAL
144
B
O
ASP
227
B
O
ASP
227
1
A
MET
1
A
MET
1
1
Y
1
A
TYR
114
0.070
SIDE CHAIN
1
A
CSD
111
-164.28
-90.67
1
A
SER
112
-166.15
12.79
1
A
SER
164
-118.50
-169.13
1
B
ARG
157
-113.68
57.33
1
B
ARG
158
-116.06
76.57
1
B
CYS
189
29.69
60.88
WATER.PARAM
WATER.TOP
ION.PARAM
cION.TOP
18.3
0.12
0.08
0.00
0.12
0.00
-0.24
0.1905
0.004
0.1781
0.1786
0.1786
1.80
28.03
2155
43592
43561
4.9
100
RANDOM
1965839.22
0.000000
1
isotropic
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 2AHJ
Engh & Huber
FLAT MODEL
19.6635
0.38989
0.19
0.17
5.00
0.12
0.08
1.80
28.03
324
3793
1
0
3468
0.005
1.2
22.4
1.11
1.10
1.50
1.54
2.00
2.14
2.00
3.16
2.50
0.233
0.013
0.21
1.91
331
6786
6786
6
4.7
100.0
19.6
1.8
28.03
1IRE
431214
431183
-3
-3
0.095
0.09
1
5.9
9.9
100
0.35
1.80
1.90
2.2
6251
0.331
1
9.0
100.0
data reduction
MOSFLM
data scaling
SCALA
phasing
AMoRE
refinement
CNS
1.0
data scaling
CCP4
(SCALA)
Crystal Structure of Co-type nitrile hydratase from Pseudonocardia thermophila
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
The biological assembly is a (alpha/beta)2 generated from the heterodimer
in the asymmetric unit by the operation: x, y, -z.
A
SER
9
A
SER
9
HELX_P
A
GLN
31
A
GLN
31
1
1
23
A
THR
35
A
THR
35
HELX_P
A
GLU
49
A
GLU
49
1
2
15
A
GLY
51
A
GLY
51
HELX_P
A
ASP
65
A
ASP
65
1
3
15
A
ASP
65
A
ASP
65
HELX_P
A
ASP
75
A
ASP
75
1
4
11
A
ASP
75
A
ASP
75
HELX_P
A
GLU
82
A
GLU
82
1
5
8
A
PRO
115
A
PRO
115
HELX_P
A
GLY
120
A
GLY
120
1
6
6
A
PRO
123
A
PRO
123
HELX_P
A
GLU
128
A
GLU
128
1
7
6
A
GLU
128
A
GLU
128
HELX_P
A
VAL
136
A
VAL
136
1
8
9
A
GLU
138
A
GLU
138
HELX_P
A
GLY
148
A
GLY
148
1
9
11
A
SER
182
A
SER
182
HELX_P
A
THR
188
A
THR
188
1
10
7
A
THR
191
A
THR
191
HELX_P
A
GLY
197
A
GLY
197
1
11
7
B
ALA
27
B
ALA
27
HELX_P
B
ALA
43
B
ALA
43
1
12
17
B
GLY
47
B
GLY
47
HELX_P
B
GLN
57
B
GLN
57
1
13
11
B
ASN
59
B
ASN
59
HELX_P
B
SER
66
B
SER
66
1
14
8
B
PRO
67
B
PRO
67
HELX_P
B
THR
83
B
THR
83
1
15
17
B
ASP
87
B
ASP
87
HELX_P
B
ASN
101
B
ASN
101
1
16
15
B
LYS
112
B
LYS
112
HELX_P
B
GLY
126
B
GLY
126
1
17
15
B
ALA
159
B
ALA
159
HELX_P
B
ARG
163
B
ARG
163
5
18
5
B
TYR
178
B
TYR
178
HELX_P
B
GLY
183
B
GLY
183
1
19
6
B
ALA
200
B
ALA
200
HELX_P
B
GLY
205
B
GLY
205
1
20
6
B
PRO
206
B
PRO
206
HELX_P
B
GLY
208
B
GLY
208
5
21
3
covale
1.337
both
A
LEU
110
A
C
LEU
110
1_555
A
CSD
111
A
N
CSD
111
1_555
covale
1.334
both
A
CSD
111
A
C
CSD
111
1_555
A
SER
112
A
N
SER
112
1_555
covale
1.329
both
A
SER
112
A
C
SER
112
1_555
A
CSO
113
A
N
CSO
113
1_555
covale
1.331
both
A
CSO
113
A
C
CSO
113
1_555
A
TYR
114
A
N
TYR
114
1_555
metalc
2.276
A
CYS
108
A
SG
CYS
108
1_555
A
CO
301
C
CO
CO
1_555
metalc
2.141
A
CSD
111
A
SG
CSD
111
1_555
A
CO
301
C
CO
CO
1_555
metalc
2.093
A
SER
112
A
N
SER
112
1_555
A
CO
301
C
CO
CO
1_555
metalc
1.960
A
CSO
113
A
N
CSO
113
1_555
A
CO
301
C
CO
CO
1_555
metalc
2.279
A
CSO
113
A
SG
CSO
113
1_555
A
CO
301
C
CO
CO
1_555
metalc
2.576
A
CO
301
C
CO
CO
1_555
A
HOH
432
D
O
HOH
1_555
LYASE
Cysteine-sulfinic acid, cysteine-sulfenic acid, post-translational modification, non-corrin cobalt, nitrile, hydration, LYASE
NHAA_PSETH
UNP
1
1
Q7SID2
NHAB_PSETH
UNP
2
1
Q7SID3
1
203
1IRE
2
204
Q7SID2
A
1
2
204
1
228
1IRE
1
228
Q7SID3
B
2
1
228
2
6
7
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ASP
92
A
ASP
92
A
GLU
97
A
GLU
97
A
MET
166
A
MET
166
A
LEU
171
A
LEU
171
A
VAL
102
A
VAL
102
A
VAL
107
A
VAL
107
A
GLU
156
A
GLU
156
A
ASP
161
A
ASP
161
B
SER
212
B
SER
212
B
TRP
219
B
TRP
219
B
GLU
191
B
GLU
191
B
THR
199
B
THR
199
B
THR
166
B
THR
166
B
TYR
176
B
TYR
176
B
SER
130
B
SER
130
B
ARG
131
B
ARG
131
A
VAL
102
A
VAL
102
A
VAL
107
A
VAL
107
A
GLU
156
A
GLU
156
A
ASP
161
A
ASP
161
B
SER
212
B
SER
212
B
TRP
219
B
TRP
219
B
GLU
191
B
GLU
191
B
THR
199
B
THR
199
B
THR
166
B
THR
166
B
TYR
176
B
TYR
176
B
VAL
144
B
VAL
144
B
PHE
147
B
PHE
147
B
ILE
223
B
ILE
223
B
ASP
227
B
ASP
227
BINDING SITE FOR RESIDUE CO A 301
A
CO
301
Software
5
A
CYS
108
A
CYS
108
5
1_555
A
CSD
111
A
CSD
111
5
1_555
A
SER
112
A
SER
112
5
1_555
A
CSO
113
A
CSO
113
5
1_555
A
HOH
432
D
HOH
5
1_555
154
P 32 2 1