1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Miura, K. Kamimura, M. Aizawa, T. Kiuchi, M. Hayakawa, Y. Mizuguchi, M. Kawano, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N O N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 N C N 109 N C N 110 N O N 111 N O N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N N N 118 S C N 119 N C N 120 N O N 121 N C N 122 N C N 123 N C N 124 N C N 125 N N N 126 N O N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N N N 143 S C N 144 N C N 145 N O N 146 N C Y 147 N C Y 148 N C Y 149 N C Y 150 N C Y 151 N C Y 152 N C N 153 N O N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N N N 166 S C N 167 N C N 168 N O N 169 N C N 170 N C N 171 N C N 172 N O N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N N N 183 S C N 184 N C N 185 N O N 186 R C N 187 N O N 188 N C N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N N N 200 S C N 201 N C N 202 N O N 203 N C N 204 N C N 205 N C N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing Y 145 N doub Y 146 N sing Y 147 N sing N 148 N sing Y 149 N doub N 150 N sing Y 151 N doub N 152 N sing Y 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing US peptides 0196-9781 23 2111 2116 10.1016/S0196-9781(02)00254-1 12535689 Solution structure of paralytic peptide of silkworm, Bombyx mori 2002 10.2210/pdb1irr/pdb pdb_00001irr 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 2466.793 paralytic peptide residues 1-23 1 syn polymer no no ENFVGGCATGFKRTADGRCKPTF ENFVGGCATGFKRTADGRCKPTF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Data collection 1 0 2003-02-11 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 1 4 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession Assignment table of BmPP PDBJ Y PDBJ 2001-10-23 REL This sequence occurs naturally in silkworm. sample This structure was determined using standard 2D homonuclear techniques. structures with the lowest energy 100 20 2D NOESY DQF-COSY 2D TOCSY 2D NOESY DQF-COSY 2D TOCSY 4.5 1 atm 303 K 4.5 1 atm 303 K the structures are based on a total of 200 restraints, 200 are NOE-derived unambiguous distance constraints, 72 are NOE-derived ambiguous distance constraints, 17 dihedral angle restraints,14 distance restraints from hydrogen bonds. distance geometry simulated annealing 5 lowest energy 4.0mM BmPP, 90% H2O, 10% D2O 90% H2O/10% D2O 4.0mM BmPP, 100% D2O 100% D2O Nilges data analysis ARIA 1.0 Brunger structure solution CNS 1.0 Brunger refinement CNS 1.0 500 Bruker DMX GLU 1 n 1 GLU 1 A ASN 2 n 2 ASN 2 A PHE 3 n 3 PHE 3 A VAL 4 n 4 VAL 4 A GLY 5 n 5 GLY 5 A GLY 6 n 6 GLY 6 A CYS 7 n 7 CYS 7 A ALA 8 n 8 ALA 8 A THR 9 n 9 THR 9 A GLY 10 n 10 GLY 10 A PHE 11 n 11 PHE 11 A LYS 12 n 12 LYS 12 A ARG 13 n 13 ARG 13 A THR 14 n 14 THR 14 A ALA 15 n 15 ALA 15 A ASP 16 n 16 ASP 16 A GLY 17 n 17 GLY 17 A ARG 18 n 18 ARG 18 A CYS 19 n 19 CYS 19 A LYS 20 n 20 LYS 20 A PRO 21 n 21 PRO 21 A THR 22 n 22 THR 22 A PHE 23 n 23 PHE 23 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 12 A N LYS 12 A O LYS 20 A O LYS 20 1 A ASN 2 -160.36 -17.51 1 A ALA 15 -68.13 6.82 1 A ASP 16 -150.28 2.02 1 A ARG 18 -145.26 -155.59 1 A PRO 21 -48.82 99.20 1 A THR 22 51.00 81.95 2 A PHE 3 -117.03 55.76 2 A ARG 18 -149.05 -152.37 2 A PRO 21 -52.24 94.18 2 A THR 22 51.38 80.38 3 A VAL 4 -89.31 37.42 3 A ASP 16 -144.00 -1.02 3 A ARG 18 -150.34 -153.19 3 A PRO 21 -53.46 102.18 3 A THR 22 46.83 71.96 4 A VAL 4 -141.27 24.54 4 A ARG 18 -159.96 -154.28 4 A PRO 21 -51.19 96.20 4 A THR 22 53.08 72.99 5 A ASN 2 57.62 91.12 5 A ALA 15 -78.15 24.16 5 A ARG 18 -159.46 -155.43 5 A PRO 21 -52.21 99.27 5 A THR 22 52.59 77.63 6 A ARG 18 -151.73 -157.18 6 A PRO 21 -50.36 104.24 6 A THR 22 44.66 79.39 7 A PHE 3 -110.11 -140.62 7 A ASP 16 -142.82 -1.92 7 A ARG 18 -149.56 -155.02 7 A PRO 21 -47.97 96.39 7 A THR 22 47.57 82.21 8 A ALA 15 -76.64 22.61 8 A ASP 16 -142.44 -6.44 8 A ARG 18 -157.11 -158.73 8 A PRO 21 -50.02 97.44 8 A THR 22 49.78 73.20 9 A ARG 18 -152.62 -150.90 9 A PRO 21 -52.29 94.11 9 A THR 22 50.00 74.70 10 A PHE 3 -145.41 -152.50 10 A ARG 18 -148.81 -156.49 10 A PRO 21 -59.18 102.73 11 A ASN 2 -165.55 -34.97 11 A ARG 18 -152.88 -157.95 11 A PRO 21 -48.27 102.56 11 A THR 22 44.77 70.70 12 A ARG 18 -155.21 -155.04 12 A PRO 21 -46.49 100.83 13 A ASN 2 -88.31 43.06 13 A ALA 15 -66.50 4.48 13 A ARG 18 -145.12 -149.81 13 A PRO 21 -48.99 99.81 13 A THR 22 50.43 73.61 14 A ALA 15 -68.78 7.99 14 A ASP 16 -156.66 9.33 14 A PRO 21 -45.73 93.78 14 A THR 22 46.77 78.26 15 A THR 9 -45.81 -70.36 15 A ASP 16 -152.29 6.54 15 A ARG 18 -145.29 -156.16 15 A PRO 21 -47.25 93.54 15 A THR 22 52.35 77.71 16 A ALA 15 -66.53 4.72 16 A ARG 18 -153.18 -156.00 16 A PRO 21 -48.21 96.61 16 A THR 22 52.10 77.42 17 A ARG 18 -155.36 -156.26 17 A PRO 21 -55.65 101.02 17 A THR 22 50.36 76.17 18 A PHE 3 -127.39 -158.64 18 A ASP 16 -142.03 -3.28 18 A ARG 18 -146.83 -154.09 18 A PRO 21 -54.79 100.81 18 A THR 22 48.10 76.09 19 A VAL 4 -83.78 30.74 19 A ARG 18 -149.16 -154.66 19 A PRO 21 -50.91 103.38 19 A THR 22 46.06 76.85 20 A ASP 16 -151.59 12.91 20 A ARG 18 -152.49 -151.31 20 A PRO 21 -48.15 96.42 20 A THR 22 62.01 118.32 Solution structure of paralytic peptide of the silkworm, Bombyx mori 1 N N disulf 2.029 A CYS 7 A SG CYS 7 1_555 A CYS 19 A SG CYS 19 1_555 CYTOKINE single beta sheet, CYTOKINE Q95YI2_BOMMO UNP 1 109 Q95YI2 ENFVGGCATGFKRTADGRCKPTF 109 131 1IRR 1 23 Q95YI2 A 1 1 23 2 anti-parallel A PHE 11 A PHE 11 A ARG 13 A ARG 13 A CYS 19 A CYS 19 A PRO 21 A PRO 21