1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Miura, K.
Kamimura, M.
Aizawa, T.
Kiuchi, M.
Hayakawa, Y.
Mizuguchi, M.
Kawano, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
N
C
N
109
N
C
N
110
N
O
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
N
N
126
N
O
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
Y
147
N
C
Y
148
N
C
Y
149
N
C
Y
150
N
C
Y
151
N
C
Y
152
N
C
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
N
N
166
S
C
N
167
N
C
N
168
N
O
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
R
C
N
187
N
O
N
188
N
C
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
Y
145
N
doub
Y
146
N
sing
Y
147
N
sing
N
148
N
sing
Y
149
N
doub
N
150
N
sing
Y
151
N
doub
N
152
N
sing
Y
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
US
peptides
0196-9781
23
2111
2116
10.1016/S0196-9781(02)00254-1
12535689
Solution structure of paralytic peptide of silkworm, Bombyx mori
2002
10.2210/pdb1irr/pdb
pdb_00001irr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2466.793
paralytic peptide
residues 1-23
1
syn
polymer
no
no
ENFVGGCATGFKRTADGRCKPTF
ENFVGGCATGFKRTADGRCKPTF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
1
0
2003-02-11
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Assignment table of BmPP
PDBJ
Y
PDBJ
2001-10-23
REL
This sequence occurs naturally in silkworm.
sample
This structure was determined using standard 2D homonuclear techniques.
structures with the lowest energy
100
20
2D NOESY
DQF-COSY
2D TOCSY
2D NOESY
DQF-COSY
2D TOCSY
4.5
1
atm
303
K
4.5
1
atm
303
K
the structures are based on a total of 200 restraints, 200 are NOE-derived unambiguous
distance constraints, 72 are NOE-derived ambiguous
distance constraints, 17 dihedral angle restraints,14 distance restraints
from hydrogen bonds.
distance geometry simulated annealing
5
lowest energy
4.0mM BmPP, 90% H2O, 10% D2O
90% H2O/10% D2O
4.0mM BmPP, 100% D2O
100% D2O
Nilges
data analysis
ARIA
1.0
Brunger
structure solution
CNS
1.0
Brunger
refinement
CNS
1.0
500
Bruker
DMX
GLU
1
n
1
GLU
1
A
ASN
2
n
2
ASN
2
A
PHE
3
n
3
PHE
3
A
VAL
4
n
4
VAL
4
A
GLY
5
n
5
GLY
5
A
GLY
6
n
6
GLY
6
A
CYS
7
n
7
CYS
7
A
ALA
8
n
8
ALA
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
PHE
11
n
11
PHE
11
A
LYS
12
n
12
LYS
12
A
ARG
13
n
13
ARG
13
A
THR
14
n
14
THR
14
A
ALA
15
n
15
ALA
15
A
ASP
16
n
16
ASP
16
A
GLY
17
n
17
GLY
17
A
ARG
18
n
18
ARG
18
A
CYS
19
n
19
CYS
19
A
LYS
20
n
20
LYS
20
A
PRO
21
n
21
PRO
21
A
THR
22
n
22
THR
22
A
PHE
23
n
23
PHE
23
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
12
A
N
LYS
12
A
O
LYS
20
A
O
LYS
20
1
A
ASN
2
-160.36
-17.51
1
A
ALA
15
-68.13
6.82
1
A
ASP
16
-150.28
2.02
1
A
ARG
18
-145.26
-155.59
1
A
PRO
21
-48.82
99.20
1
A
THR
22
51.00
81.95
2
A
PHE
3
-117.03
55.76
2
A
ARG
18
-149.05
-152.37
2
A
PRO
21
-52.24
94.18
2
A
THR
22
51.38
80.38
3
A
VAL
4
-89.31
37.42
3
A
ASP
16
-144.00
-1.02
3
A
ARG
18
-150.34
-153.19
3
A
PRO
21
-53.46
102.18
3
A
THR
22
46.83
71.96
4
A
VAL
4
-141.27
24.54
4
A
ARG
18
-159.96
-154.28
4
A
PRO
21
-51.19
96.20
4
A
THR
22
53.08
72.99
5
A
ASN
2
57.62
91.12
5
A
ALA
15
-78.15
24.16
5
A
ARG
18
-159.46
-155.43
5
A
PRO
21
-52.21
99.27
5
A
THR
22
52.59
77.63
6
A
ARG
18
-151.73
-157.18
6
A
PRO
21
-50.36
104.24
6
A
THR
22
44.66
79.39
7
A
PHE
3
-110.11
-140.62
7
A
ASP
16
-142.82
-1.92
7
A
ARG
18
-149.56
-155.02
7
A
PRO
21
-47.97
96.39
7
A
THR
22
47.57
82.21
8
A
ALA
15
-76.64
22.61
8
A
ASP
16
-142.44
-6.44
8
A
ARG
18
-157.11
-158.73
8
A
PRO
21
-50.02
97.44
8
A
THR
22
49.78
73.20
9
A
ARG
18
-152.62
-150.90
9
A
PRO
21
-52.29
94.11
9
A
THR
22
50.00
74.70
10
A
PHE
3
-145.41
-152.50
10
A
ARG
18
-148.81
-156.49
10
A
PRO
21
-59.18
102.73
11
A
ASN
2
-165.55
-34.97
11
A
ARG
18
-152.88
-157.95
11
A
PRO
21
-48.27
102.56
11
A
THR
22
44.77
70.70
12
A
ARG
18
-155.21
-155.04
12
A
PRO
21
-46.49
100.83
13
A
ASN
2
-88.31
43.06
13
A
ALA
15
-66.50
4.48
13
A
ARG
18
-145.12
-149.81
13
A
PRO
21
-48.99
99.81
13
A
THR
22
50.43
73.61
14
A
ALA
15
-68.78
7.99
14
A
ASP
16
-156.66
9.33
14
A
PRO
21
-45.73
93.78
14
A
THR
22
46.77
78.26
15
A
THR
9
-45.81
-70.36
15
A
ASP
16
-152.29
6.54
15
A
ARG
18
-145.29
-156.16
15
A
PRO
21
-47.25
93.54
15
A
THR
22
52.35
77.71
16
A
ALA
15
-66.53
4.72
16
A
ARG
18
-153.18
-156.00
16
A
PRO
21
-48.21
96.61
16
A
THR
22
52.10
77.42
17
A
ARG
18
-155.36
-156.26
17
A
PRO
21
-55.65
101.02
17
A
THR
22
50.36
76.17
18
A
PHE
3
-127.39
-158.64
18
A
ASP
16
-142.03
-3.28
18
A
ARG
18
-146.83
-154.09
18
A
PRO
21
-54.79
100.81
18
A
THR
22
48.10
76.09
19
A
VAL
4
-83.78
30.74
19
A
ARG
18
-149.16
-154.66
19
A
PRO
21
-50.91
103.38
19
A
THR
22
46.06
76.85
20
A
ASP
16
-151.59
12.91
20
A
ARG
18
-152.49
-151.31
20
A
PRO
21
-48.15
96.42
20
A
THR
22
62.01
118.32
Solution structure of paralytic peptide of the silkworm, Bombyx mori
1
N
N
disulf
2.029
A
CYS
7
A
SG
CYS
7
1_555
A
CYS
19
A
SG
CYS
19
1_555
CYTOKINE
single beta sheet, CYTOKINE
Q95YI2_BOMMO
UNP
1
109
Q95YI2
ENFVGGCATGFKRTADGRCKPTF
109
131
1IRR
1
23
Q95YI2
A
1
1
23
2
anti-parallel
A
PHE
11
A
PHE
11
A
ARG
13
A
ARG
13
A
CYS
19
A
CYS
19
A
PRO
21
A
PRO
21