0.011793
0.006808
0.000000
0.000000
0.013617
0.000000
0.000000
0.000000
0.007006
0.00000
0.00000
0.00000
Nakano, H.
Yamaichi, Y.
Uchiyama, S.
Yoshida, T.
Nishina, K.
Kato, H.
Ohkubo, T.
Honda, T.
Yamagata, Y.
Kobayashi, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
84.799
84.799
142.727
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
US
J.BIOL.CHEM.
JBCHA3
0071
0021-9258
278
3427
3436
10.1074/jbc.M208098200
12411440
Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium
2003
10.2210/pdb1is1/pdb
pdb_00001is1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
DIFFRACTOMETER
WEISSENBERG
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
BL-6A
Photon Factory
1.000
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
20635.791
RIBOSOME RECYCLING FACTOR
1
man
polymer
18.015
water
227
nat
water
no
no
MINEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEK
AIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEI
QKLTDVAVKKIDEVLAAKEKELMEV
MINEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEK
AIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEI
QKLTDVAVKKIDEVLAAKEKELMEV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Vibrio
Escherichia
sample
670
Vibrio parahaemolyticus
562
Escherichia coli
PLASMID
pET22B
1
2.39
48.58
VAPOR DIFFUSION, HANGING DROP
6.2
PEG 8000, sodium acetate, GDP, fusidic acid, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2003-06-17
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
PDBJ
Y
PDBJ
2001-11-05
REL
REL
HOH
water
HOH
1
2
HOH
HOH
186
A
HOH
2
2
HOH
HOH
187
A
HOH
3
2
HOH
HOH
188
A
HOH
4
2
HOH
HOH
189
A
HOH
5
2
HOH
HOH
190
A
HOH
6
2
HOH
HOH
191
A
HOH
7
2
HOH
HOH
192
A
HOH
8
2
HOH
HOH
193
A
HOH
9
2
HOH
HOH
194
A
HOH
10
2
HOH
HOH
195
A
HOH
11
2
HOH
HOH
196
A
HOH
12
2
HOH
HOH
197
A
HOH
13
2
HOH
HOH
198
A
HOH
14
2
HOH
HOH
199
A
HOH
15
2
HOH
HOH
200
A
HOH
16
2
HOH
HOH
201
A
HOH
17
2
HOH
HOH
202
A
HOH
18
2
HOH
HOH
203
A
HOH
19
2
HOH
HOH
204
A
HOH
20
2
HOH
HOH
205
A
HOH
21
2
HOH
HOH
206
A
HOH
22
2
HOH
HOH
207
A
HOH
23
2
HOH
HOH
208
A
HOH
24
2
HOH
HOH
209
A
HOH
25
2
HOH
HOH
210
A
HOH
26
2
HOH
HOH
211
A
HOH
27
2
HOH
HOH
212
A
HOH
28
2
HOH
HOH
213
A
HOH
29
2
HOH
HOH
214
A
HOH
30
2
HOH
HOH
215
A
HOH
31
2
HOH
HOH
216
A
HOH
32
2
HOH
HOH
217
A
HOH
33
2
HOH
HOH
218
A
HOH
34
2
HOH
HOH
219
A
HOH
35
2
HOH
HOH
220
A
HOH
36
2
HOH
HOH
221
A
HOH
37
2
HOH
HOH
222
A
HOH
38
2
HOH
HOH
223
A
HOH
39
2
HOH
HOH
224
A
HOH
40
2
HOH
HOH
225
A
HOH
41
2
HOH
HOH
226
A
HOH
42
2
HOH
HOH
227
A
HOH
43
2
HOH
HOH
228
A
HOH
44
2
HOH
HOH
229
A
HOH
45
2
HOH
HOH
230
A
HOH
46
2
HOH
HOH
231
A
HOH
47
2
HOH
HOH
232
A
HOH
48
2
HOH
HOH
233
A
HOH
49
2
HOH
HOH
234
A
HOH
50
2
HOH
HOH
235
A
HOH
51
2
HOH
HOH
236
A
HOH
52
2
HOH
HOH
237
A
HOH
53
2
HOH
HOH
238
A
HOH
54
2
HOH
HOH
239
A
HOH
55
2
HOH
HOH
240
A
HOH
56
2
HOH
HOH
241
A
HOH
57
2
HOH
HOH
242
A
HOH
58
2
HOH
HOH
243
A
HOH
59
2
HOH
HOH
244
A
HOH
60
2
HOH
HOH
245
A
HOH
61
2
HOH
HOH
246
A
HOH
62
2
HOH
HOH
247
A
HOH
63
2
HOH
HOH
248
A
HOH
64
2
HOH
HOH
249
A
HOH
65
2
HOH
HOH
250
A
HOH
66
2
HOH
HOH
251
A
HOH
67
2
HOH
HOH
252
A
HOH
68
2
HOH
HOH
253
A
HOH
69
2
HOH
HOH
254
A
HOH
70
2
HOH
HOH
255
A
HOH
71
2
HOH
HOH
256
A
HOH
72
2
HOH
HOH
257
A
HOH
73
2
HOH
HOH
258
A
HOH
74
2
HOH
HOH
259
A
HOH
75
2
HOH
HOH
260
A
HOH
76
2
HOH
HOH
261
A
HOH
77
2
HOH
HOH
262
A
HOH
78
2
HOH
HOH
263
A
HOH
79
2
HOH
HOH
264
A
HOH
80
2
HOH
HOH
265
A
HOH
81
2
HOH
HOH
266
A
HOH
82
2
HOH
HOH
267
A
HOH
83
2
HOH
HOH
268
A
HOH
84
2
HOH
HOH
269
A
HOH
85
2
HOH
HOH
270
A
HOH
86
2
HOH
HOH
271
A
HOH
87
2
HOH
HOH
272
A
HOH
88
2
HOH
HOH
273
A
HOH
89
2
HOH
HOH
274
A
HOH
90
2
HOH
HOH
275
A
HOH
91
2
HOH
HOH
276
A
HOH
92
2
HOH
HOH
277
A
HOH
93
2
HOH
HOH
278
A
HOH
94
2
HOH
HOH
279
A
HOH
95
2
HOH
HOH
280
A
HOH
96
2
HOH
HOH
281
A
HOH
97
2
HOH
HOH
282
A
HOH
98
2
HOH
HOH
283
A
HOH
99
2
HOH
HOH
284
A
HOH
100
2
HOH
HOH
285
A
HOH
101
2
HOH
HOH
286
A
HOH
102
2
HOH
HOH
287
A
HOH
103
2
HOH
HOH
288
A
HOH
104
2
HOH
HOH
289
A
HOH
105
2
HOH
HOH
290
A
HOH
106
2
HOH
HOH
291
A
HOH
107
2
HOH
HOH
292
A
HOH
108
2
HOH
HOH
293
A
HOH
109
2
HOH
HOH
294
A
HOH
110
2
HOH
HOH
295
A
HOH
111
2
HOH
HOH
296
A
HOH
112
2
HOH
HOH
297
A
HOH
113
2
HOH
HOH
298
A
HOH
114
2
HOH
HOH
299
A
HOH
115
2
HOH
HOH
300
A
HOH
116
2
HOH
HOH
301
A
HOH
117
2
HOH
HOH
302
A
HOH
118
2
HOH
HOH
303
A
HOH
119
2
HOH
HOH
304
A
HOH
120
2
HOH
HOH
305
A
HOH
121
2
HOH
HOH
306
A
HOH
122
2
HOH
HOH
307
A
HOH
123
2
HOH
HOH
308
A
HOH
124
2
HOH
HOH
309
A
HOH
125
2
HOH
HOH
310
A
HOH
126
2
HOH
HOH
311
A
HOH
127
2
HOH
HOH
312
A
HOH
128
2
HOH
HOH
313
A
HOH
129
2
HOH
HOH
314
A
HOH
130
2
HOH
HOH
315
A
HOH
131
2
HOH
HOH
316
A
HOH
132
2
HOH
HOH
317
A
HOH
133
2
HOH
HOH
318
A
HOH
134
2
HOH
HOH
319
A
HOH
135
2
HOH
HOH
320
A
HOH
136
2
HOH
HOH
321
A
HOH
137
2
HOH
HOH
322
A
HOH
138
2
HOH
HOH
323
A
HOH
139
2
HOH
HOH
324
A
HOH
140
2
HOH
HOH
325
A
HOH
141
2
HOH
HOH
326
A
HOH
142
2
HOH
HOH
327
A
HOH
143
2
HOH
HOH
328
A
HOH
144
2
HOH
HOH
329
A
HOH
145
2
HOH
HOH
330
A
HOH
146
2
HOH
HOH
331
A
HOH
147
2
HOH
HOH
332
A
HOH
148
2
HOH
HOH
333
A
HOH
149
2
HOH
HOH
334
A
HOH
150
2
HOH
HOH
335
A
HOH
151
2
HOH
HOH
336
A
HOH
152
2
HOH
HOH
337
A
HOH
153
2
HOH
HOH
338
A
HOH
154
2
HOH
HOH
339
A
HOH
155
2
HOH
HOH
340
A
HOH
156
2
HOH
HOH
341
A
HOH
157
2
HOH
HOH
342
A
HOH
158
2
HOH
HOH
343
A
HOH
159
2
HOH
HOH
344
A
HOH
160
2
HOH
HOH
345
A
HOH
161
2
HOH
HOH
346
A
HOH
162
2
HOH
HOH
347
A
HOH
163
2
HOH
HOH
348
A
HOH
164
2
HOH
HOH
349
A
HOH
165
2
HOH
HOH
350
A
HOH
166
2
HOH
HOH
351
A
HOH
167
2
HOH
HOH
352
A
HOH
168
2
HOH
HOH
353
A
HOH
169
2
HOH
HOH
354
A
HOH
170
2
HOH
HOH
355
A
HOH
171
2
HOH
HOH
356
A
HOH
172
2
HOH
HOH
357
A
HOH
173
2
HOH
HOH
358
A
HOH
174
2
HOH
HOH
359
A
HOH
175
2
HOH
HOH
360
A
HOH
176
2
HOH
HOH
361
A
HOH
177
2
HOH
HOH
362
A
HOH
178
2
HOH
HOH
363
A
HOH
179
2
HOH
HOH
364
A
HOH
180
2
HOH
HOH
365
A
HOH
181
2
HOH
HOH
366
A
HOH
182
2
HOH
HOH
367
A
HOH
183
2
HOH
HOH
368
A
HOH
184
2
HOH
HOH
369
A
HOH
185
2
HOH
HOH
370
A
HOH
186
2
HOH
HOH
371
A
HOH
187
2
HOH
HOH
372
A
HOH
188
2
HOH
HOH
373
A
HOH
189
2
HOH
HOH
374
A
HOH
190
2
HOH
HOH
375
A
HOH
191
2
HOH
HOH
376
A
HOH
192
2
HOH
HOH
377
A
HOH
193
2
HOH
HOH
378
A
HOH
194
2
HOH
HOH
379
A
HOH
195
2
HOH
HOH
380
A
HOH
196
2
HOH
HOH
381
A
HOH
197
2
HOH
HOH
382
A
HOH
198
2
HOH
HOH
383
A
HOH
199
2
HOH
HOH
384
A
HOH
200
2
HOH
HOH
385
A
HOH
201
2
HOH
HOH
386
A
HOH
202
2
HOH
HOH
387
A
HOH
203
2
HOH
HOH
388
A
HOH
204
2
HOH
HOH
389
A
HOH
205
2
HOH
HOH
390
A
HOH
206
2
HOH
HOH
391
A
HOH
207
2
HOH
HOH
392
A
HOH
208
2
HOH
HOH
393
A
HOH
209
2
HOH
HOH
394
A
HOH
210
2
HOH
HOH
395
A
HOH
211
2
HOH
HOH
396
A
HOH
212
2
HOH
HOH
397
A
HOH
213
2
HOH
HOH
398
A
HOH
214
2
HOH
HOH
399
A
HOH
215
2
HOH
HOH
400
A
HOH
216
2
HOH
HOH
401
A
HOH
217
2
HOH
HOH
402
A
HOH
218
2
HOH
HOH
403
A
HOH
219
2
HOH
HOH
404
A
HOH
220
2
HOH
HOH
405
A
HOH
221
2
HOH
HOH
406
A
HOH
222
2
HOH
HOH
407
A
HOH
223
2
HOH
HOH
408
A
HOH
224
2
HOH
HOH
409
A
HOH
225
2
HOH
HOH
410
A
HOH
226
2
HOH
HOH
411
A
HOH
227
2
HOH
HOH
412
A
MET
1
n
1
MET
1
A
ILE
2
n
2
ILE
2
A
ASN
3
n
3
ASN
3
A
GLU
4
n
4
GLU
4
A
ILE
5
n
5
ILE
5
A
LYS
6
n
6
LYS
6
A
LYS
7
n
7
LYS
7
A
ASP
8
n
8
ASP
8
A
ALA
9
n
9
ALA
9
A
GLN
10
n
10
GLN
10
A
GLU
11
n
11
GLU
11
A
ARG
12
n
12
ARG
12
A
MET
13
n
13
MET
13
A
ASP
14
n
14
ASP
14
A
LYS
15
n
15
LYS
15
A
SER
16
n
16
SER
16
A
VAL
17
n
17
VAL
17
A
GLU
18
n
18
GLU
18
A
ALA
19
n
19
ALA
19
A
LEU
20
n
20
LEU
20
A
LYS
21
n
21
LYS
21
A
ASN
22
n
22
ASN
22
A
ASN
23
n
23
ASN
23
A
LEU
24
n
24
LEU
24
A
SER
25
n
25
SER
25
A
LYS
26
n
26
LYS
26
A
VAL
27
n
27
VAL
27
A
ARG
28
n
28
ARG
28
A
THR
29
n
29
THR
29
A
GLY
30
n
30
GLY
30
A
ARG
31
n
31
ARG
31
A
ALA
32
n
32
ALA
32
A
HIS
33
n
33
HIS
33
A
PRO
34
n
34
PRO
34
A
SER
35
n
35
SER
35
A
LEU
36
n
36
LEU
36
A
LEU
37
n
37
LEU
37
A
SER
38
n
38
SER
38
A
GLY
39
n
39
GLY
39
A
ILE
40
n
40
ILE
40
A
SER
41
n
41
SER
41
A
VAL
42
n
42
VAL
42
A
GLU
43
n
43
GLU
43
A
TYR
44
n
44
TYR
44
A
TYR
45
n
45
TYR
45
A
GLY
46
n
46
GLY
46
A
ALA
47
n
47
ALA
47
A
ALA
48
n
48
ALA
48
A
THR
49
n
49
THR
49
A
PRO
50
n
50
PRO
50
A
LEU
51
n
51
LEU
51
A
ASN
52
n
52
ASN
52
A
GLN
53
n
53
GLN
53
A
VAL
54
n
54
VAL
54
A
ALA
55
n
55
ALA
55
A
ASN
56
n
56
ASN
56
A
VAL
57
n
57
VAL
57
A
VAL
58
n
58
VAL
58
A
ALA
59
n
59
ALA
59
A
GLU
60
n
60
GLU
60
A
ASP
61
n
61
ASP
61
A
ALA
62
n
62
ALA
62
A
ARG
63
n
63
ARG
63
A
THR
64
n
64
THR
64
A
LEU
65
n
65
LEU
65
A
ALA
66
n
66
ALA
66
A
ILE
67
n
67
ILE
67
A
THR
68
n
68
THR
68
A
VAL
69
n
69
VAL
69
A
PHE
70
n
70
PHE
70
A
ASP
71
n
71
ASP
71
A
LYS
72
n
72
LYS
72
A
GLU
73
n
73
GLU
73
A
LEU
74
n
74
LEU
74
A
THR
75
n
75
THR
75
A
GLN
76
n
76
GLN
76
A
LYS
77
n
77
LYS
77
A
VAL
78
n
78
VAL
78
A
GLU
79
n
79
GLU
79
A
LYS
80
n
80
LYS
80
A
ALA
81
n
81
ALA
81
A
ILE
82
n
82
ILE
82
A
MET
83
n
83
MET
83
A
MET
84
n
84
MET
84
A
SER
85
n
85
SER
85
A
ASP
86
n
86
ASP
86
A
LEU
87
n
87
LEU
87
A
GLY
88
n
88
GLY
88
A
LEU
89
n
89
LEU
89
A
ASN
90
n
90
ASN
90
A
PRO
91
n
91
PRO
91
A
MET
92
n
92
MET
92
A
SER
93
n
93
SER
93
A
ALA
94
n
94
ALA
94
A
GLY
95
n
95
GLY
95
A
THR
96
n
96
THR
96
A
ILE
97
n
97
ILE
97
A
ILE
98
n
98
ILE
98
A
ARG
99
n
99
ARG
99
A
VAL
100
n
100
VAL
100
A
PRO
101
n
101
PRO
101
A
LEU
102
n
102
LEU
102
A
PRO
103
n
103
PRO
103
A
PRO
104
n
104
PRO
104
A
LEU
105
n
105
LEU
105
A
THR
106
n
106
THR
106
A
GLU
107
n
107
GLU
107
A
GLU
108
n
108
GLU
108
A
ARG
109
n
109
ARG
109
A
ARG
110
n
110
ARG
110
A
LYS
111
n
111
LYS
111
A
ASP
112
n
112
ASP
112
A
LEU
113
n
113
LEU
113
A
VAL
114
n
114
VAL
114
A
LYS
115
n
115
LYS
115
A
ILE
116
n
116
ILE
116
A
VAL
117
n
117
VAL
117
A
ARG
118
n
118
ARG
118
A
GLY
119
n
119
GLY
119
A
GLU
120
n
120
GLU
120
A
ALA
121
n
121
ALA
121
A
GLU
122
n
122
GLU
122
A
GLY
123
n
123
GLY
123
A
GLY
124
n
124
GLY
124
A
ARG
125
n
125
ARG
125
A
VAL
126
n
126
VAL
126
A
ALA
127
n
127
ALA
127
A
VAL
128
n
128
VAL
128
A
ARG
129
n
129
ARG
129
A
ASN
130
n
130
ASN
130
A
ILE
131
n
131
ILE
131
A
ARG
132
n
132
ARG
132
A
ARG
133
n
133
ARG
133
A
ASP
134
n
134
ASP
134
A
ALA
135
n
135
ALA
135
A
ASN
136
n
136
ASN
136
A
ASN
137
n
137
ASN
137
A
ASP
138
n
138
ASP
138
A
LEU
139
n
139
LEU
139
A
LYS
140
n
140
LYS
140
A
ALA
141
n
141
ALA
141
A
LEU
142
n
142
LEU
142
A
LEU
143
n
143
LEU
143
A
LYS
144
n
144
LYS
144
A
ASP
145
n
145
ASP
145
A
LYS
146
n
146
LYS
146
A
GLU
147
n
147
GLU
147
A
ILE
148
n
148
ILE
148
A
SER
149
n
149
SER
149
A
GLU
150
n
150
GLU
150
A
ASP
151
n
151
ASP
151
A
GLU
152
n
152
GLU
152
A
ASP
153
n
153
ASP
153
A
ARG
154
n
154
ARG
154
A
LYS
155
n
155
LYS
155
A
ALA
156
n
156
ALA
156
A
GLN
157
n
157
GLN
157
A
GLU
158
n
158
GLU
158
A
GLU
159
n
159
GLU
159
A
ILE
160
n
160
ILE
160
A
GLN
161
n
161
GLN
161
A
LYS
162
n
162
LYS
162
A
LEU
163
n
163
LEU
163
A
THR
164
n
164
THR
164
A
ASP
165
n
165
ASP
165
A
VAL
166
n
166
VAL
166
A
ALA
167
n
167
ALA
167
A
VAL
168
n
168
VAL
168
A
LYS
169
n
169
LYS
169
A
LYS
170
n
170
LYS
170
A
ILE
171
n
171
ILE
171
A
ASP
172
n
172
ASP
172
A
GLU
173
n
173
GLU
173
A
VAL
174
n
174
VAL
174
A
LEU
175
n
175
LEU
175
A
ALA
176
n
176
ALA
176
A
ALA
177
n
177
ALA
177
A
LYS
178
n
178
LYS
178
A
GLU
179
n
179
GLU
179
A
LYS
180
n
180
LYS
180
A
GLU
181
n
181
GLU
181
A
LEU
182
n
182
LEU
182
A
MET
183
n
183
MET
183
A
GLU
184
n
184
GLU
184
A
VAL
185
n
185
VAL
185
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
42
A
N
VAL
42
A
O
THR
49
A
O
THR
49
A
N
VAL
58
A
N
VAL
58
A
O
ALA
66
A
O
ALA
66
A
N
LEU
65
A
N
LEU
65
A
O
VAL
100
A
O
VAL
100
A
O
ARG
99
A
O
ARG
99
A
N
MET
92
A
N
MET
92
1
A
HOH
252
B
HOH
1
A
HOH
299
B
HOH
1
A
HOH
314
B
HOH
1
A
HOH
352
B
HOH
1
A
ALA
94
-163.14
118.48
0.273
0.203
2.20
20
526
10271
9422
5.58
RANDAM
1
2.0
MOLECULAR REPLACEMENT
Engh & Huber
2.20
20
227
1668
0
0
1441
2.2
40
1IS1
10326
2.0
2.0
0.073
1
99.6
2.20
2.24
93.7
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.0
Crystal structure of ribosome recycling factor from Vibrio parahaemolyticus
1
N
N
2
N
N
A
MET
1
A
MET
1
HELX_P
A
SER
25
A
SER
25
1
1
25
A
HIS
33
A
HIS
33
HELX_P
A
SER
38
A
SER
38
5
2
6
A
LEU
74
A
LEU
74
HELX_P
A
SER
85
A
SER
85
1
3
12
A
THR
106
A
THR
106
HELX_P
A
ASP
145
A
ASP
145
1
4
40
A
SER
149
A
SER
149
HELX_P
A
GLU
184
A
GLU
184
1
5
36
TRANSLATION
TRANSLATION
RRF_VIBPA
UNP
1
1
Q8GRF5
MINEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEK
AIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEI
QKLTDVAVKKIDEVLAAKEKELMEV
1
185
1IS1
1
185
Q8GRF5
A
1
1
185
2
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
41
A
SER
41
A
TYR
44
A
TYR
44
A
ALA
47
A
ALA
47
A
PRO
50
A
PRO
50
A
ALA
55
A
ALA
55
A
ASP
61
A
ASP
61
A
THR
64
A
THR
64
A
VAL
69
A
VAL
69
A
ILE
97
A
ILE
97
A
PRO
101
A
PRO
101
A
MET
92
A
MET
92
A
ALA
94
A
ALA
94
155
H 3 2