0.010888
0.006286
0.000000
0.000000
0.012572
0.000000
0.000000
0.000000
0.015590
0.00000
0.00000
0.00000
Matsumiya, S.
Ishino, S.
Ishino, Y.
Morikawa, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
91.847
91.847
64.144
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
C
N
4
N
H
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
N
N
102
S
C
N
103
N
C
N
104
N
O
N
105
N
C
N
106
N
C
N
107
N
C
N
108
N
O
N
109
N
O
N
110
N
O
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
Y
135
N
C
Y
136
N
N
Y
137
N
C
Y
138
N
C
Y
139
N
N
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
S
C
N
159
N
C
N
160
N
C
N
161
N
C
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
N
C
N
228
N
C
N
229
N
S
N
230
N
C
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
Y
248
N
C
Y
249
N
C
Y
250
N
C
Y
251
N
C
Y
252
N
C
Y
253
N
C
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
O
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
R
C
N
302
N
O
N
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
N
325
N
O
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
C
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
Y
133
N
sing
Y
134
N
doub
Y
135
N
doub
N
136
N
sing
Y
137
N
sing
N
138
N
sing
Y
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
Y
241
N
doub
Y
242
N
sing
Y
243
N
sing
N
244
N
sing
Y
245
N
doub
N
246
N
sing
Y
247
N
doub
N
248
N
sing
Y
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
Y
310
N
doub
Y
311
N
sing
Y
312
N
sing
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
UK
Genes Cells
1356-9597
7
911
922
10.1046/j.1365-2443.2002.00572.x
12296822
Physical interaction between proliferating cell nuclear antigen and
replication factor C from Pyrococcus furiosus
2002
10.2210/pdb1isq/pdb
pdb_00001isq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
104
1
DIFFRACTOMETER
2001-02-17
WEISSENBERG
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
BL-6B
Photon Factory
1.0000
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6B
28018.215
Proliferating Cell Nuclear Antigen
M73L
1
man
polymer
1367.654
replication factor C large subunit
C-terminal PIP-box region
1
syn
polymer
18.015
water
32
nat
water
DNA POLYMERASE SLIDING CLAMP
no
no
MPFEIVFEGAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKIL
KRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKDAVKDASLVSDSIKFIAR
ENEFIMKAEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLT
FLLAPRVEE
MPFEIVFEGAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKIL
KRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKDAVKDASLVSDSIKFIAR
ENEFIMKAEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLT
FLLAPRVEE
A
polypeptide(L)
no
yes
(ACE)KQATLFDFLKK
XKQATLFDFLKK
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Pyrococcus
Escherichia
Escherichia coli
sample
2261
Pyrococcus furiosus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
Plasmid
pET-21a
1
2.66
53.71
VAPOR DIFFUSION, HANGING DROP
5.5
ammonium sulfate, sodium citrate, glycerol, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
293.0
database_2
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2002-10-23
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-11-10
1
4
2023-10-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
1GE8 contains the same protein PCNA without ligand.
PDBJ
Y
PDBJ
2001-12-19
REL
REL
HOH
water
This sequence corresponds to the residues 469-479 of Pyrococcus furiosus replication factor C large subunit.
sample
1GE8
PDB entry 1GE8
PDB
experimental model
HOH
501
3
HOH
HOH
501
A
HOH
502
3
HOH
HOH
502
A
HOH
503
3
HOH
HOH
503
A
HOH
504
3
HOH
HOH
504
A
HOH
506
3
HOH
HOH
506
A
HOH
507
3
HOH
HOH
507
A
HOH
509
3
HOH
HOH
509
A
HOH
510
3
HOH
HOH
510
A
HOH
511
3
HOH
HOH
511
A
HOH
512
3
HOH
HOH
512
A
HOH
514
3
HOH
HOH
514
A
HOH
515
3
HOH
HOH
515
A
HOH
516
3
HOH
HOH
516
A
HOH
517
3
HOH
HOH
517
A
HOH
518
3
HOH
HOH
518
A
HOH
519
3
HOH
HOH
519
A
HOH
520
3
HOH
HOH
520
A
HOH
521
3
HOH
HOH
521
A
HOH
522
3
HOH
HOH
522
A
HOH
523
3
HOH
HOH
523
A
HOH
524
3
HOH
HOH
524
A
HOH
525
3
HOH
HOH
525
A
HOH
526
3
HOH
HOH
526
A
HOH
527
3
HOH
HOH
527
A
HOH
528
3
HOH
HOH
528
A
HOH
529
3
HOH
HOH
529
A
HOH
530
3
HOH
HOH
530
A
HOH
531
3
HOH
HOH
531
A
HOH
532
3
HOH
HOH
532
A
HOH
505
3
HOH
HOH
505
B
HOH
508
3
HOH
HOH
508
B
HOH
513
3
HOH
HOH
513
B
n
1
1
A
PRO
2
n
2
PRO
2
A
PHE
3
n
3
PHE
3
A
GLU
4
n
4
GLU
4
A
ILE
5
n
5
ILE
5
A
VAL
6
n
6
VAL
6
A
PHE
7
n
7
PHE
7
A
GLU
8
n
8
GLU
8
A
GLY
9
n
9
GLY
9
A
ALA
10
n
10
ALA
10
A
LYS
11
n
11
LYS
11
A
GLU
12
n
12
GLU
12
A
PHE
13
n
13
PHE
13
A
ALA
14
n
14
ALA
14
A
GLN
15
n
15
GLN
15
A
LEU
16
n
16
LEU
16
A
ILE
17
n
17
ILE
17
A
ASP
18
n
18
ASP
18
A
THR
19
n
19
THR
19
A
ALA
20
n
20
ALA
20
A
SER
21
n
21
SER
21
A
LYS
22
n
22
LYS
22
A
LEU
23
n
23
LEU
23
A
ILE
24
n
24
ILE
24
A
ASP
25
n
25
ASP
25
A
GLU
26
n
26
GLU
26
A
ALA
27
n
27
ALA
27
A
ALA
28
n
28
ALA
28
A
PHE
29
n
29
PHE
29
A
LYS
30
n
30
LYS
30
A
VAL
31
n
31
VAL
31
A
THR
32
n
32
THR
32
A
GLU
33
n
33
GLU
33
A
ASP
34
n
34
ASP
34
A
GLY
35
n
35
GLY
35
A
ILE
36
n
36
ILE
36
A
SER
37
n
37
SER
37
A
MET
38
n
38
MET
38
A
ARG
39
n
39
ARG
39
A
ALA
40
n
40
ALA
40
A
MET
41
n
41
MET
41
A
ASP
42
n
42
ASP
42
A
PRO
43
n
43
PRO
43
A
SER
44
n
44
SER
44
A
ARG
45
n
45
ARG
45
A
VAL
46
n
46
VAL
46
A
VAL
47
n
47
VAL
47
A
LEU
48
n
48
LEU
48
A
ILE
49
n
49
ILE
49
A
ASP
50
n
50
ASP
50
A
LEU
51
n
51
LEU
51
A
ASN
52
n
52
ASN
52
A
LEU
53
n
53
LEU
53
A
PRO
54
n
54
PRO
54
A
SER
55
n
55
SER
55
A
SER
56
n
56
SER
56
A
ILE
57
n
57
ILE
57
A
PHE
58
n
58
PHE
58
A
SER
59
n
59
SER
59
A
LYS
60
n
60
LYS
60
A
TYR
61
n
61
TYR
61
A
GLU
62
n
62
GLU
62
A
VAL
63
n
63
VAL
63
A
VAL
64
n
64
VAL
64
A
GLU
65
n
65
GLU
65
A
PRO
66
n
66
PRO
66
A
GLU
67
n
67
GLU
67
A
THR
68
n
68
THR
68
A
ILE
69
n
69
ILE
69
A
GLY
70
n
70
GLY
70
A
VAL
71
n
71
VAL
71
A
ASN
72
n
72
ASN
72
A
LEU
73
n
73
LEU
73
A
ASP
74
n
74
ASP
74
A
HIS
75
n
75
HIS
75
A
LEU
76
n
76
LEU
76
A
LYS
77
n
77
LYS
77
A
LYS
78
n
78
LYS
78
A
ILE
79
n
79
ILE
79
A
LEU
80
n
80
LEU
80
A
LYS
81
n
81
LYS
81
A
ARG
82
n
82
ARG
82
A
GLY
83
n
83
GLY
83
A
LYS
84
n
84
LYS
84
A
ALA
85
n
85
ALA
85
A
LYS
86
n
86
LYS
86
A
ASP
87
n
87
ASP
87
A
THR
88
n
88
THR
88
A
LEU
89
n
89
LEU
89
A
ILE
90
n
90
ILE
90
A
LEU
91
n
91
LEU
91
A
LYS
92
n
92
LYS
92
A
LYS
93
n
93
LYS
93
A
GLY
94
n
94
GLY
94
A
GLU
95
n
95
GLU
95
A
GLU
96
n
96
GLU
96
A
ASN
97
n
97
ASN
97
A
PHE
98
n
98
PHE
98
A
LEU
99
n
99
LEU
99
A
GLU
100
n
100
GLU
100
A
ILE
101
n
101
ILE
101
A
THR
102
n
102
THR
102
A
ILE
103
n
103
ILE
103
A
GLN
104
n
104
GLN
104
A
GLY
105
n
105
GLY
105
A
THR
106
n
106
THR
106
A
ALA
107
n
107
ALA
107
A
THR
108
n
108
THR
108
A
ARG
109
n
109
ARG
109
A
THR
110
n
110
THR
110
A
PHE
111
n
111
PHE
111
A
ARG
112
n
112
ARG
112
A
VAL
113
n
113
VAL
113
A
PRO
114
n
114
PRO
114
A
LEU
115
n
115
LEU
115
A
ILE
116
n
116
ILE
116
A
ASP
117
n
117
ASP
117
A
VAL
118
n
118
VAL
118
A
GLU
119
n
119
GLU
119
A
n
120
120
A
n
121
121
A
n
122
122
A
n
123
123
A
n
124
124
A
n
125
125
A
PRO
126
n
126
PRO
126
A
GLU
127
n
127
GLU
127
A
LEU
128
n
128
LEU
128
A
PRO
129
n
129
PRO
129
A
PHE
130
n
130
PHE
130
A
THR
131
n
131
THR
131
A
ALA
132
n
132
ALA
132
A
LYS
133
n
133
LYS
133
A
VAL
134
n
134
VAL
134
A
VAL
135
n
135
VAL
135
A
VAL
136
n
136
VAL
136
A
LEU
137
n
137
LEU
137
A
GLY
138
n
138
GLY
138
A
GLU
139
n
139
GLU
139
A
VAL
140
n
140
VAL
140
A
LEU
141
n
141
LEU
141
A
LYS
142
n
142
LYS
142
A
ASP
143
n
143
ASP
143
A
ALA
144
n
144
ALA
144
A
VAL
145
n
145
VAL
145
A
LYS
146
n
146
LYS
146
A
ASP
147
n
147
ASP
147
A
ALA
148
n
148
ALA
148
A
SER
149
n
149
SER
149
A
LEU
150
n
150
LEU
150
A
VAL
151
n
151
VAL
151
A
SER
152
n
152
SER
152
A
ASP
153
n
153
ASP
153
A
SER
154
n
154
SER
154
A
ILE
155
n
155
ILE
155
A
LYS
156
n
156
LYS
156
A
PHE
157
n
157
PHE
157
A
ILE
158
n
158
ILE
158
A
ALA
159
n
159
ALA
159
A
ARG
160
n
160
ARG
160
A
GLU
161
n
161
GLU
161
A
ASN
162
n
162
ASN
162
A
GLU
163
n
163
GLU
163
A
PHE
164
n
164
PHE
164
A
ILE
165
n
165
ILE
165
A
MET
166
n
166
MET
166
A
LYS
167
n
167
LYS
167
A
ALA
168
n
168
ALA
168
A
GLU
169
n
169
GLU
169
A
GLY
170
n
170
GLY
170
A
GLU
171
n
171
GLU
171
A
THR
172
n
172
THR
172
A
GLN
173
n
173
GLN
173
A
GLU
174
n
174
GLU
174
A
VAL
175
n
175
VAL
175
A
GLU
176
n
176
GLU
176
A
ILE
177
n
177
ILE
177
A
LYS
178
n
178
LYS
178
A
LEU
179
n
179
LEU
179
A
THR
180
n
180
THR
180
A
LEU
181
n
181
LEU
181
A
GLU
182
n
182
GLU
182
A
ASP
183
n
183
ASP
183
A
GLU
184
n
184
GLU
184
A
GLY
185
n
185
GLY
185
A
LEU
186
n
186
LEU
186
A
LEU
187
n
187
LEU
187
A
ASP
188
n
188
ASP
188
A
ILE
189
n
189
ILE
189
A
GLU
190
n
190
GLU
190
A
VAL
191
n
191
VAL
191
A
GLN
192
n
192
GLN
192
A
GLU
193
n
193
GLU
193
A
GLU
194
n
194
GLU
194
A
THR
195
n
195
THR
195
A
LYS
196
n
196
LYS
196
A
SER
197
n
197
SER
197
A
ALA
198
n
198
ALA
198
A
TYR
199
n
199
TYR
199
A
GLY
200
n
200
GLY
200
A
VAL
201
n
201
VAL
201
A
SER
202
n
202
SER
202
A
TYR
203
n
203
TYR
203
A
LEU
204
n
204
LEU
204
A
SER
205
n
205
SER
205
A
ASP
206
n
206
ASP
206
A
MET
207
n
207
MET
207
A
VAL
208
n
208
VAL
208
A
LYS
209
n
209
LYS
209
A
GLY
210
n
210
GLY
210
A
LEU
211
n
211
LEU
211
A
GLY
212
n
212
GLY
212
A
LYS
213
n
213
LYS
213
A
ALA
214
n
214
ALA
214
A
ASP
215
n
215
ASP
215
A
GLU
216
n
216
GLU
216
A
VAL
217
n
217
VAL
217
A
THR
218
n
218
THR
218
A
ILE
219
n
219
ILE
219
A
LYS
220
n
220
LYS
220
A
PHE
221
n
221
PHE
221
A
GLY
222
n
222
GLY
222
A
ASN
223
n
223
ASN
223
A
GLU
224
n
224
GLU
224
A
MET
225
n
225
MET
225
A
PRO
226
n
226
PRO
226
A
MET
227
n
227
MET
227
A
GLN
228
n
228
GLN
228
A
MET
229
n
229
MET
229
A
GLU
230
n
230
GLU
230
A
TYR
231
n
231
TYR
231
A
TYR
232
n
232
TYR
232
A
ILE
233
n
233
ILE
233
A
ARG
234
n
234
ARG
234
A
ASP
235
n
235
ASP
235
A
GLU
236
n
236
GLU
236
A
GLY
237
n
237
GLY
237
A
ARG
238
n
238
ARG
238
A
LEU
239
n
239
LEU
239
A
THR
240
n
240
THR
240
A
PHE
241
n
241
PHE
241
A
LEU
242
n
242
LEU
242
A
LEU
243
n
243
LEU
243
A
ALA
244
n
244
ALA
244
A
PRO
245
n
245
PRO
245
A
ARG
246
n
246
ARG
246
A
VAL
247
n
247
VAL
247
A
n
248
248
A
n
249
249
A
ACE
468
n
1
ACE
468
B
LYS
469
n
2
LYS
469
B
GLN
470
n
3
GLN
470
B
ALA
471
n
4
ALA
471
B
THR
472
n
5
THR
472
B
LEU
473
n
6
LEU
473
B
PHE
474
n
7
PHE
474
B
ASP
475
n
8
ASP
475
B
PHE
476
n
9
PHE
476
B
n
10
477
B
n
11
478
B
n
12
479
B
author_defined_assembly
6
hexameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-y+1,x-y+1,z
crystal symmetry operation
45.9235000000
79.5418352614
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_565
-x+y,-x+1,z
crystal symmetry operation
-45.9235000000
79.5418352614
0.0000000000
A
O
LYS
60
A
O
LYS
60
A
N
VAL
6
A
N
VAL
6
A
N
ILE
5
A
N
ILE
5
A
O
LEU
91
A
O
LEU
91
A
N
THR
88
A
N
THR
88
A
O
GLN
104
A
O
GLN
104
A
N
ILE
101
A
N
ILE
101
A
O
PHE
111
A
O
PHE
111
A
O
GLU
67
A
O
GLU
67
A
N
VAL
31
A
N
VAL
31
A
N
LYS
30
A
N
LYS
30
A
O
SER
37
A
O
SER
37
A
N
ILE
36
A
N
ILE
36
A
O
LEU
53
A
O
LEU
53
A
N
ASP
50
A
N
ASP
50
A
O
THR
240
A
O
THR
240
A
O
PHE
241
A
O
PHE
241
A
N
MET
229
A
N
MET
229
A
O
GLN
228
A
O
GLN
228
A
N
LYS
220
A
N
LYS
220
A
O
VAL
217
A
O
VAL
217
A
N
VAL
136
A
N
VAL
136
A
N
VAL
135
A
N
VAL
135
A
O
LEU
187
A
O
LEU
187
A
O
ILE
177
A
O
ILE
177
A
N
MET
166
A
N
MET
166
A
O
ILE
165
A
O
ILE
165
A
N
ILE
158
A
N
ILE
158
A
N
PHE
157
A
N
PHE
157
A
O
SER
197
A
O
SER
197
1
A
MET
1
A
MET
1
1
Y
1
A
GLU
120
A
GLU
120
1
Y
1
A
MET
121
A
MET
121
1
Y
1
A
GLU
122
A
GLU
122
1
Y
1
A
VAL
123
A
VAL
123
1
Y
1
A
ASP
124
A
ASP
124
1
Y
1
A
LEU
125
A
LEU
125
1
Y
1
A
GLU
248
A
GLU
248
1
Y
1
A
GLU
249
A
GLU
249
1
Y
1
B
LEU
477
B
LEU
10
1
Y
1
B
LYS
478
B
LYS
11
1
Y
1
B
LYS
479
B
LYS
12
1
Y
1
A
GLU
163
-161.02
111.42
1
A
THR
172
-134.33
-70.56
1
A
ASP
188
-170.56
147.58
1
A
GLU
193
175.91
157.50
1
A
ASP
235
58.92
-49.87
1
A
ARG
246
-103.06
52.18
38.192
-3.287
-5.475
0.000
-3.287
0.000
6.574
0.2913000
0.2348000
2.30
50.00
1342
13806
13793
9.73
99.9
random
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB entry 1GE8
Engh & Huber
0.25
0.31
5.00
0.34
0.40
2.30
50.00
32
1991
0
0
1959
0.0070
1.2733
25.6853
0.7361
0.3119000
0.2575000
2.38
118
1355
99.8
41.01
2.30
50.00
1ISQ
13871
13871
-3.0
0.0540000
1
19.32
5.1
99.9
0.3510000
2.30
2.38
2.24
1377
4.1
99.9
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
Pyrococcus furiosus PCNA complexed with RFCL PIP-box peptide
1
N
N
2
N
N
3
N
N
3
N
N
The second and third parts of the biological assembly are generated by the three-fold axis: -y, x-y, z and y-x+1, -x+1, z.
A
GLY
9
A
GLY
9
HELX_P
A
ILE
24
A
ILE
24
1
1
16
A
SER
56
A
SER
56
HELX_P
A
PHE
58
A
PHE
58
5
2
3
A
LEU
73
A
LEU
73
HELX_P
A
LYS
81
A
LYS
81
1
3
9
A
GLY
138
A
GLY
138
HELX_P
A
LEU
150
A
LEU
150
1
4
13
A
VAL
201
A
VAL
201
HELX_P
A
GLY
210
A
GLY
210
1
5
10
B
THR
472
B
THR
5
HELX_P
B
PHE
476
B
PHE
9
5
6
5
covale
1.330
both
B
ACE
468
B
C
ACE
1
1_555
B
LYS
469
B
N
LYS
2
1_555
DNA BINDING PROTEIN
Toroidal trimer, DNA binding protein
PCNA_PYRFU
UNP
1
O73947
MPFEIVFEGAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNMDHLKKIL
KRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKDAVKDASLVSDSIKFIAR
ENEFIMKAEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLT
FLLAPRVEE
BAA88155
GB
2
6539526
KQATLFDFLKK
1
249
1ISQ
1
249
O73947
A
1
1
249
469
479
1ISQ
469
479
6539526
B
2
2
12
1
MET
engineered mutation
LEU
73
1ISQ
A
O73947
UNP
73
73
5
9
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
60
A
LYS
60
A
VAL
63
A
VAL
63
A
PHE
3
A
PHE
3
A
GLU
8
A
GLU
8
A
THR
88
A
THR
88
A
LYS
93
A
LYS
93
A
PHE
98
A
PHE
98
A
GLN
104
A
GLN
104
A
THR
108
A
THR
108
A
PRO
114
A
PRO
114
A
GLU
67
A
GLU
67
A
ASN
72
A
ASN
72
A
GLU
26
A
GLU
26
A
VAL
31
A
VAL
31
A
GLY
35
A
GLY
35
A
MET
41
A
MET
41
A
VAL
47
A
VAL
47
A
PRO
54
A
PRO
54
A
GLY
237
A
GLY
237
A
LEU
243
A
LEU
243
A
MET
227
A
MET
227
A
ILE
233
A
ILE
233
A
GLU
216
A
GLU
216
A
PHE
221
A
PHE
221
A
ALA
132
A
ALA
132
A
LEU
137
A
LEU
137
A
LEU
186
A
LEU
186
A
VAL
191
A
VAL
191
A
GLU
174
A
GLU
174
A
LEU
179
A
LEU
179
A
GLU
163
A
GLU
163
A
GLU
169
A
GLU
169
A
SER
154
A
SER
154
A
ARG
160
A
ARG
160
A
THR
195
A
THR
195
A
GLY
200
A
GLY
200
173
P 63