0.022247
0.007469
0.001562
0.000000
0.019862
-0.001261
0.000000
0.000000
0.031426
0.00000
0.00000
0.00000
Konno, M.
Kashima, A.
Yoshikawa-Fujioka, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
84.91
95.22
108.56
44.950
53.110
32.018
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
To be Published
0353
Turns are Essential in the Folding of the Globular Beta-Barrel Structure of Yeast Cyclophilin A, CPR1
10.2210/pdb1ist/pdb
pdb_00001ist
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
293
1
IMAGE PLATE
1994-01-01
FUJI
IMAGE PLATE
1993-01-01
FUJI
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
BL-6A
Photon Factory
1.00
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
BL-6A
Photon Factory
1.00
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
17411.670
Cyclophilin A
5.2.1.8
2
nat
polymer
18.015
water
126
nat
water
Peptidyl-prolyl cis-trans isomerase
no
no
MSQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGK
FPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSG
EL
MSQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGK
FPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSG
EL
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
sample
4932
Saccharomyces cerevisiae
AH22
4
2.00
38.16
VAPOR DIFFUSION, HANGING DROP
8.0
PEG 6000, EDTA, ethanol, Tris-HCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
struct_conf
struct_conf_type
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Refinement description
Data collection
Database references
1
0
2003-11-18
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
PDBJ
Y
PDBJ
2001-12-25
REL
REL
HOH
water
HOH
1
2
HOH
HOH
163
A
HOH
2
2
HOH
HOH
164
A
HOH
3
2
HOH
HOH
165
A
HOH
4
2
HOH
HOH
166
A
HOH
5
2
HOH
HOH
167
A
HOH
6
2
HOH
HOH
168
A
HOH
7
2
HOH
HOH
169
A
HOH
8
2
HOH
HOH
170
A
HOH
9
2
HOH
HOH
171
A
HOH
10
2
HOH
HOH
172
A
HOH
11
2
HOH
HOH
173
A
HOH
12
2
HOH
HOH
174
A
HOH
13
2
HOH
HOH
175
A
HOH
14
2
HOH
HOH
176
A
HOH
15
2
HOH
HOH
177
A
HOH
16
2
HOH
HOH
178
A
HOH
17
2
HOH
HOH
179
A
HOH
18
2
HOH
HOH
180
A
HOH
19
2
HOH
HOH
181
A
HOH
20
2
HOH
HOH
182
A
HOH
21
2
HOH
HOH
183
A
HOH
22
2
HOH
HOH
184
A
HOH
23
2
HOH
HOH
185
A
HOH
24
2
HOH
HOH
186
A
HOH
25
2
HOH
HOH
187
A
HOH
26
2
HOH
HOH
188
A
HOH
27
2
HOH
HOH
189
A
HOH
28
2
HOH
HOH
190
A
HOH
29
2
HOH
HOH
191
A
HOH
35
2
HOH
HOH
192
A
HOH
36
2
HOH
HOH
193
A
HOH
37
2
HOH
HOH
194
A
HOH
38
2
HOH
HOH
195
A
HOH
39
2
HOH
HOH
196
A
HOH
63
2
HOH
HOH
197
A
HOH
64
2
HOH
HOH
198
A
HOH
65
2
HOH
HOH
199
A
HOH
70
2
HOH
HOH
200
A
HOH
75
2
HOH
HOH
201
A
HOH
76
2
HOH
HOH
202
A
HOH
77
2
HOH
HOH
203
A
HOH
78
2
HOH
HOH
204
A
HOH
79
2
HOH
HOH
205
A
HOH
80
2
HOH
HOH
206
A
HOH
81
2
HOH
HOH
207
A
HOH
82
2
HOH
HOH
208
A
HOH
90
2
HOH
HOH
209
A
HOH
91
2
HOH
HOH
210
A
HOH
92
2
HOH
HOH
211
A
HOH
93
2
HOH
HOH
212
A
HOH
94
2
HOH
HOH
213
A
HOH
95
2
HOH
HOH
214
A
HOH
96
2
HOH
HOH
215
A
HOH
97
2
HOH
HOH
216
A
HOH
98
2
HOH
HOH
217
A
HOH
99
2
HOH
HOH
218
A
HOH
105
2
HOH
HOH
219
A
HOH
106
2
HOH
HOH
220
A
HOH
107
2
HOH
HOH
221
A
HOH
108
2
HOH
HOH
222
A
HOH
109
2
HOH
HOH
223
A
HOH
110
2
HOH
HOH
224
A
HOH
113
2
HOH
HOH
225
A
HOH
114
2
HOH
HOH
226
A
HOH
115
2
HOH
HOH
227
A
HOH
116
2
HOH
HOH
228
A
HOH
117
2
HOH
HOH
229
A
HOH
118
2
HOH
HOH
230
A
HOH
121
2
HOH
HOH
231
A
HOH
122
2
HOH
HOH
232
A
HOH
123
2
HOH
HOH
233
A
HOH
124
2
HOH
HOH
234
A
HOH
125
2
HOH
HOH
235
A
HOH
126
2
HOH
HOH
236
A
HOH
30
2
HOH
HOH
163
B
HOH
31
2
HOH
HOH
164
B
HOH
32
2
HOH
HOH
165
B
HOH
33
2
HOH
HOH
166
B
HOH
34
2
HOH
HOH
167
B
HOH
40
2
HOH
HOH
168
B
HOH
41
2
HOH
HOH
169
B
HOH
42
2
HOH
HOH
170
B
HOH
43
2
HOH
HOH
171
B
HOH
44
2
HOH
HOH
172
B
HOH
45
2
HOH
HOH
173
B
HOH
46
2
HOH
HOH
174
B
HOH
47
2
HOH
HOH
175
B
HOH
48
2
HOH
HOH
176
B
HOH
49
2
HOH
HOH
177
B
HOH
50
2
HOH
HOH
178
B
HOH
51
2
HOH
HOH
179
B
HOH
52
2
HOH
HOH
180
B
HOH
53
2
HOH
HOH
181
B
HOH
54
2
HOH
HOH
182
B
HOH
55
2
HOH
HOH
183
B
HOH
56
2
HOH
HOH
184
B
HOH
57
2
HOH
HOH
185
B
HOH
58
2
HOH
HOH
186
B
HOH
59
2
HOH
HOH
187
B
HOH
60
2
HOH
HOH
188
B
HOH
61
2
HOH
HOH
189
B
HOH
62
2
HOH
HOH
190
B
HOH
66
2
HOH
HOH
191
B
HOH
67
2
HOH
HOH
192
B
HOH
68
2
HOH
HOH
193
B
HOH
69
2
HOH
HOH
194
B
HOH
71
2
HOH
HOH
195
B
HOH
72
2
HOH
HOH
196
B
HOH
73
2
HOH
HOH
197
B
HOH
74
2
HOH
HOH
198
B
HOH
83
2
HOH
HOH
199
B
HOH
84
2
HOH
HOH
200
B
HOH
85
2
HOH
HOH
201
B
HOH
86
2
HOH
HOH
202
B
HOH
87
2
HOH
HOH
203
B
HOH
88
2
HOH
HOH
204
B
HOH
89
2
HOH
HOH
205
B
HOH
100
2
HOH
HOH
206
B
HOH
101
2
HOH
HOH
207
B
HOH
102
2
HOH
HOH
208
B
HOH
103
2
HOH
HOH
209
B
HOH
104
2
HOH
HOH
210
B
HOH
111
2
HOH
HOH
211
B
HOH
112
2
HOH
HOH
212
B
HOH
119
2
HOH
HOH
213
B
HOH
120
2
HOH
HOH
214
B
n
1
1
A
SER
2
n
2
SER
2
A
GLN
3
n
3
GLN
3
A
VAL
4
n
4
VAL
4
A
TYR
5
n
5
TYR
5
A
PHE
6
n
6
PHE
6
A
ASP
7
n
7
ASP
7
A
VAL
8
n
8
VAL
8
A
GLU
9
n
9
GLU
9
A
ALA
10
n
10
ALA
10
A
ASP
11
n
11
ASP
11
A
GLY
12
n
12
GLY
12
A
GLN
13
n
13
GLN
13
A
PRO
14
n
14
PRO
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
ARG
17
n
17
ARG
17
A
VAL
18
n
18
VAL
18
A
VAL
19
n
19
VAL
19
A
PHE
20
n
20
PHE
20
A
LYS
21
n
21
LYS
21
A
LEU
22
n
22
LEU
22
A
TYR
23
n
23
TYR
23
A
ASN
24
n
24
ASN
24
A
ASP
25
n
25
ASP
25
A
ILE
26
n
26
ILE
26
A
VAL
27
n
27
VAL
27
A
PRO
28
n
28
PRO
28
A
LYS
29
n
29
LYS
29
A
THR
30
n
30
THR
30
A
ALA
31
n
31
ALA
31
A
GLU
32
n
32
GLU
32
A
ASN
33
n
33
ASN
33
A
PHE
34
n
34
PHE
34
A
ARG
35
n
35
ARG
35
A
ALA
36
n
36
ALA
36
A
LEU
37
n
37
LEU
37
A
CYS
38
n
38
CYS
38
A
THR
39
n
39
THR
39
A
GLY
40
n
40
GLY
40
A
GLU
41
n
41
GLU
41
A
LYS
42
n
42
LYS
42
A
GLY
43
n
43
GLY
43
A
PHE
44
n
44
PHE
44
A
GLY
45
n
45
GLY
45
A
TYR
46
n
46
TYR
46
A
ALA
47
n
47
ALA
47
A
GLY
48
n
48
GLY
48
A
SER
49
n
49
SER
49
A
PRO
50
n
50
PRO
50
A
PHE
51
n
51
PHE
51
A
HIS
52
n
52
HIS
52
A
ARG
53
n
53
ARG
53
A
VAL
54
n
54
VAL
54
A
ILE
55
n
55
ILE
55
A
PRO
56
n
56
PRO
56
A
ASP
57
n
57
ASP
57
A
PHE
58
n
58
PHE
58
A
MET
59
n
59
MET
59
A
LEU
60
n
60
LEU
60
A
GLN
61
n
61
GLN
61
A
GLY
62
n
62
GLY
62
A
GLY
63
n
63
GLY
63
A
ASP
64
n
64
ASP
64
A
PHE
65
n
65
PHE
65
A
THR
66
n
66
THR
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
ASN
69
n
69
ASN
69
A
GLY
70
n
70
GLY
70
A
THR
71
n
71
THR
71
A
GLY
72
n
72
GLY
72
A
GLY
73
n
73
GLY
73
A
LYS
74
n
74
LYS
74
A
SER
75
n
75
SER
75
A
ILE
76
n
76
ILE
76
A
TYR
77
n
77
TYR
77
A
GLY
78
n
78
GLY
78
A
GLY
79
n
79
GLY
79
A
LYS
80
n
80
LYS
80
A
PHE
81
n
81
PHE
81
A
PRO
82
n
82
PRO
82
A
ASP
83
n
83
ASP
83
A
GLU
84
n
84
GLU
84
A
ASN
85
n
85
ASN
85
A
PHE
86
n
86
PHE
86
A
LYS
87
n
87
LYS
87
A
LYS
88
n
88
LYS
88
A
HIS
89
n
89
HIS
89
A
HIS
90
n
90
HIS
90
A
ASP
91
n
91
ASP
91
A
ARG
92
n
92
ARG
92
A
PRO
93
n
93
PRO
93
A
GLY
94
n
94
GLY
94
A
LEU
95
n
95
LEU
95
A
LEU
96
n
96
LEU
96
A
SER
97
n
97
SER
97
A
MET
98
n
98
MET
98
A
ALA
99
n
99
ALA
99
A
ASN
100
n
100
ASN
100
A
ALA
101
n
101
ALA
101
A
GLY
102
n
102
GLY
102
A
PRO
103
n
103
PRO
103
A
ASN
104
n
104
ASN
104
A
THR
105
n
105
THR
105
A
ASN
106
n
106
ASN
106
A
GLY
107
n
107
GLY
107
A
SER
108
n
108
SER
108
A
GLN
109
n
109
GLN
109
A
PHE
110
n
110
PHE
110
A
PHE
111
n
111
PHE
111
A
ILE
112
n
112
ILE
112
A
THR
113
n
113
THR
113
A
THR
114
n
114
THR
114
A
VAL
115
n
115
VAL
115
A
PRO
116
n
116
PRO
116
A
CYS
117
n
117
CYS
117
A
PRO
118
n
118
PRO
118
A
TRP
119
n
119
TRP
119
A
LEU
120
n
120
LEU
120
A
ASP
121
n
121
ASP
121
A
GLY
122
n
122
GLY
122
A
LYS
123
n
123
LYS
123
A
HIS
124
n
124
HIS
124
A
VAL
125
n
125
VAL
125
A
VAL
126
n
126
VAL
126
A
PHE
127
n
127
PHE
127
A
GLY
128
n
128
GLY
128
A
GLU
129
n
129
GLU
129
A
VAL
130
n
130
VAL
130
A
VAL
131
n
131
VAL
131
A
ASP
132
n
132
ASP
132
A
GLY
133
n
133
GLY
133
A
TYR
134
n
134
TYR
134
A
ASP
135
n
135
ASP
135
A
ILE
136
n
136
ILE
136
A
VAL
137
n
137
VAL
137
A
LYS
138
n
138
LYS
138
A
LYS
139
n
139
LYS
139
A
VAL
140
n
140
VAL
140
A
GLU
141
n
141
GLU
141
A
SER
142
n
142
SER
142
A
LEU
143
n
143
LEU
143
A
GLY
144
n
144
GLY
144
A
SER
145
n
145
SER
145
A
PRO
146
n
146
PRO
146
A
SER
147
n
147
SER
147
A
GLY
148
n
148
GLY
148
A
ALA
149
n
149
ALA
149
A
THR
150
n
150
THR
150
A
LYS
151
n
151
LYS
151
A
ALA
152
n
152
ALA
152
A
ARG
153
n
153
ARG
153
A
ILE
154
n
154
ILE
154
A
VAL
155
n
155
VAL
155
A
VAL
156
n
156
VAL
156
A
ALA
157
n
157
ALA
157
A
LYS
158
n
158
LYS
158
A
SER
159
n
159
SER
159
A
GLY
160
n
160
GLY
160
A
GLU
161
n
161
GLU
161
A
LEU
162
n
162
LEU
162
A
n
1
1
B
SER
2
n
2
SER
2
B
GLN
3
n
3
GLN
3
B
VAL
4
n
4
VAL
4
B
TYR
5
n
5
TYR
5
B
PHE
6
n
6
PHE
6
B
ASP
7
n
7
ASP
7
B
VAL
8
n
8
VAL
8
B
GLU
9
n
9
GLU
9
B
ALA
10
n
10
ALA
10
B
ASP
11
n
11
ASP
11
B
GLY
12
n
12
GLY
12
B
GLN
13
n
13
GLN
13
B
PRO
14
n
14
PRO
14
B
ILE
15
n
15
ILE
15
B
GLY
16
n
16
GLY
16
B
ARG
17
n
17
ARG
17
B
VAL
18
n
18
VAL
18
B
VAL
19
n
19
VAL
19
B
PHE
20
n
20
PHE
20
B
LYS
21
n
21
LYS
21
B
LEU
22
n
22
LEU
22
B
TYR
23
n
23
TYR
23
B
ASN
24
n
24
ASN
24
B
ASP
25
n
25
ASP
25
B
ILE
26
n
26
ILE
26
B
VAL
27
n
27
VAL
27
B
PRO
28
n
28
PRO
28
B
LYS
29
n
29
LYS
29
B
THR
30
n
30
THR
30
B
ALA
31
n
31
ALA
31
B
GLU
32
n
32
GLU
32
B
ASN
33
n
33
ASN
33
B
PHE
34
n
34
PHE
34
B
ARG
35
n
35
ARG
35
B
ALA
36
n
36
ALA
36
B
LEU
37
n
37
LEU
37
B
CYS
38
n
38
CYS
38
B
THR
39
n
39
THR
39
B
GLY
40
n
40
GLY
40
B
GLU
41
n
41
GLU
41
B
LYS
42
n
42
LYS
42
B
GLY
43
n
43
GLY
43
B
PHE
44
n
44
PHE
44
B
GLY
45
n
45
GLY
45
B
TYR
46
n
46
TYR
46
B
ALA
47
n
47
ALA
47
B
GLY
48
n
48
GLY
48
B
SER
49
n
49
SER
49
B
PRO
50
n
50
PRO
50
B
PHE
51
n
51
PHE
51
B
HIS
52
n
52
HIS
52
B
ARG
53
n
53
ARG
53
B
VAL
54
n
54
VAL
54
B
ILE
55
n
55
ILE
55
B
PRO
56
n
56
PRO
56
B
ASP
57
n
57
ASP
57
B
PHE
58
n
58
PHE
58
B
MET
59
n
59
MET
59
B
LEU
60
n
60
LEU
60
B
GLN
61
n
61
GLN
61
B
GLY
62
n
62
GLY
62
B
GLY
63
n
63
GLY
63
B
ASP
64
n
64
ASP
64
B
PHE
65
n
65
PHE
65
B
THR
66
n
66
THR
66
B
ALA
67
n
67
ALA
67
B
GLY
68
n
68
GLY
68
B
ASN
69
n
69
ASN
69
B
GLY
70
n
70
GLY
70
B
THR
71
n
71
THR
71
B
GLY
72
n
72
GLY
72
B
GLY
73
n
73
GLY
73
B
LYS
74
n
74
LYS
74
B
SER
75
n
75
SER
75
B
ILE
76
n
76
ILE
76
B
TYR
77
n
77
TYR
77
B
GLY
78
n
78
GLY
78
B
GLY
79
n
79
GLY
79
B
LYS
80
n
80
LYS
80
B
PHE
81
n
81
PHE
81
B
PRO
82
n
82
PRO
82
B
ASP
83
n
83
ASP
83
B
GLU
84
n
84
GLU
84
B
ASN
85
n
85
ASN
85
B
PHE
86
n
86
PHE
86
B
LYS
87
n
87
LYS
87
B
LYS
88
n
88
LYS
88
B
HIS
89
n
89
HIS
89
B
HIS
90
n
90
HIS
90
B
ASP
91
n
91
ASP
91
B
ARG
92
n
92
ARG
92
B
PRO
93
n
93
PRO
93
B
GLY
94
n
94
GLY
94
B
LEU
95
n
95
LEU
95
B
LEU
96
n
96
LEU
96
B
SER
97
n
97
SER
97
B
MET
98
n
98
MET
98
B
ALA
99
n
99
ALA
99
B
ASN
100
n
100
ASN
100
B
ALA
101
n
101
ALA
101
B
GLY
102
n
102
GLY
102
B
PRO
103
n
103
PRO
103
B
ASN
104
n
104
ASN
104
B
THR
105
n
105
THR
105
B
ASN
106
n
106
ASN
106
B
GLY
107
n
107
GLY
107
B
SER
108
n
108
SER
108
B
GLN
109
n
109
GLN
109
B
PHE
110
n
110
PHE
110
B
PHE
111
n
111
PHE
111
B
ILE
112
n
112
ILE
112
B
THR
113
n
113
THR
113
B
THR
114
n
114
THR
114
B
VAL
115
n
115
VAL
115
B
PRO
116
n
116
PRO
116
B
CYS
117
n
117
CYS
117
B
PRO
118
n
118
PRO
118
B
TRP
119
n
119
TRP
119
B
LEU
120
n
120
LEU
120
B
ASP
121
n
121
ASP
121
B
GLY
122
n
122
GLY
122
B
LYS
123
n
123
LYS
123
B
HIS
124
n
124
HIS
124
B
VAL
125
n
125
VAL
125
B
VAL
126
n
126
VAL
126
B
PHE
127
n
127
PHE
127
B
GLY
128
n
128
GLY
128
B
GLU
129
n
129
GLU
129
B
VAL
130
n
130
VAL
130
B
VAL
131
n
131
VAL
131
B
ASP
132
n
132
ASP
132
B
GLY
133
n
133
GLY
133
B
TYR
134
n
134
TYR
134
B
ASP
135
n
135
ASP
135
B
ILE
136
n
136
ILE
136
B
VAL
137
n
137
VAL
137
B
LYS
138
n
138
LYS
138
B
LYS
139
n
139
LYS
139
B
VAL
140
n
140
VAL
140
B
GLU
141
n
141
GLU
141
B
SER
142
n
142
SER
142
B
LEU
143
n
143
LEU
143
B
GLY
144
n
144
GLY
144
B
SER
145
n
145
SER
145
B
PRO
146
n
146
PRO
146
B
SER
147
n
147
SER
147
B
GLY
148
n
148
GLY
148
B
ALA
149
n
149
ALA
149
B
THR
150
n
150
THR
150
B
LYS
151
n
151
LYS
151
B
ALA
152
n
152
ALA
152
B
ARG
153
n
153
ARG
153
B
ILE
154
n
154
ILE
154
B
VAL
155
n
155
VAL
155
B
VAL
156
n
156
VAL
156
B
ALA
157
n
157
ALA
157
B
LYS
158
n
158
LYS
158
B
SER
159
n
159
SER
159
B
GLY
160
n
160
GLY
160
B
GLU
161
n
161
GLU
161
B
LEU
162
n
162
LEU
162
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
N
VAL
4
B
N
VAL
4
B
O
PHE
20
B
O
PHE
20
B
N
VAL
19
B
N
VAL
19
B
O
VAL
131
B
O
VAL
131
B
O
PHE
127
B
O
PHE
127
B
N
LEU
96
B
N
LEU
96
B
N
SER
97
B
N
SER
97
B
O
PHE
111
B
O
PHE
111
B
O
ILE
112
B
O
ILE
112
B
N
LEU
60
B
N
LEU
60
B
O
MET
59
B
O
MET
59
B
N
ILE
55
B
N
ILE
55
B
N
SER
49
B
N
SER
49
B
O
VAL
156
B
O
VAL
156
B
O
LYS
158
B
O
LYS
158
B
N
ASP
7
B
N
ASP
7
1
A
MET
1
A
MET
1
1
Y
1
B
MET
1
B
MET
1
1
Y
1
-3.62
0.60
121.00
117.38
A
A
A
CB
CG
CD1
TYR
TYR
TYR
23
23
23
N
1
3.36
0.50
120.30
123.66
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
53
53
53
N
1
15.00
2.50
121.70
136.70
A
A
A
C
N
CA
ARG
VAL
VAL
53
54
54
Y
1
6.22
0.80
106.30
112.52
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
119
119
119
N
1
-5.85
0.80
107.30
101.45
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
119
119
119
N
1
-4.77
0.60
121.00
116.23
B
B
B
CB
CG
CD2
TYR
TYR
TYR
23
23
23
N
1
4.02
0.50
120.30
124.32
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
92
92
92
N
1
7.81
0.80
106.30
114.11
B
B
B
CD1
CG
CD2
TRP
TRP
TRP
119
119
119
N
1
-7.11
1.00
110.10
102.99
B
B
B
CG
CD1
NE1
TRP
TRP
TRP
119
119
119
N
1
-4.93
0.80
107.30
102.37
B
B
B
CE2
CD2
CG
TRP
TRP
TRP
119
119
119
N
1
A
A
NE2
CD2
HIS
HIS
89
89
-0.083
0.011
1.373
1.290
N
1
A
A
NE2
CD2
HIS
HIS
90
90
-0.066
0.011
1.373
1.307
N
1
A
A
NE2
CD2
HIS
HIS
124
124
-0.083
0.011
1.373
1.290
N
1
A
A
CD
OE2
GLU
GLU
141
141
-0.066
0.011
1.252
1.186
N
1
B
B
NE2
CD2
HIS
HIS
52
52
-0.075
0.011
1.373
1.298
N
1
B
B
NE2
CD2
HIS
HIS
90
90
-0.071
0.011
1.373
1.302
N
1
B
B
NE2
CD2
HIS
HIS
124
124
-0.074
0.011
1.373
1.299
N
1
A
ASP
11
37.10
58.57
1
A
PHE
58
-142.72
-76.03
1
B
PHE
58
-152.66
-83.70
22.60
0.216
0.199
0.199
1.90
10.0
1851
18779
10.0
RANDAM
1
Isotropic
2.0
MOLECULAR REPLACEMENT
Engh & Huber
1.90
10.0
126
2566
0
0
2440
0.015
2.66
28.74
1.39
0.2812
0.2751
1.99
161
1485
1485
8
10
60
0.292
0.2547
2.09
200
1779
8
74
0.2344
0.2286
2.22
232
2220
8
90
0.2233
0.2111
2.39
252
2343
8
97
0.2224
0.2112
2.62
287
2381
8
98
0.2116
0.1865
3.00
256
2393
8
98
0.1693
0.1591
3.74
244
2300
8
94
0.2182
0.1944
10.00
219
2027
8
82
1.9
20.0
1IST
19288
2.0
2.0
0.0474
1
85.8
1.9
2.0
59.9
data scaling
WEIS
model building
X-PLOR
refinement
X-PLOR
data reduction
WEIS
phasing
X-PLOR
Crystal structure of yeast cyclophilin A, CPR1
1
N
N
1
N
N
2
N
N
2
N
N
A
TYR
23
A
TYR
23
HELX_P
A
VAL
27
A
VAL
27
5
1
5
A
PRO
28
A
PRO
28
HELX_P
A
THR
39
A
THR
39
1
2
12
A
CYS
117
A
CYS
117
HELX_P
A
ASP
121
A
ASP
121
5
3
5
A
GLY
133
A
GLY
133
HELX_P
A
VAL
140
A
VAL
140
1
4
8
A
GLU
141
A
GLU
141
HELX_P
A
GLY
144
A
GLY
144
5
5
4
B
TYR
23
B
TYR
23
HELX_P
B
VAL
27
B
VAL
27
5
6
5
B
PRO
28
B
PRO
28
HELX_P
B
THR
39
B
THR
39
1
7
12
B
CYS
117
B
CYS
117
HELX_P
B
ASP
121
B
ASP
121
5
8
5
B
GLY
133
B
GLY
133
HELX_P
B
VAL
140
B
VAL
140
1
9
8
B
GLU
141
B
GLU
141
HELX_P
B
GLY
144
B
GLY
144
5
10
4
ISOMERASE
BARREL, Cyclosporin, ISOMERASE
CYPH_YEAST
UNP
1
0
P14832
MSQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGK
FPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSG
EL
0
161
1IST
1
162
P14832
A
1
1
162
0
161
1IST
1
162
P14832
B
1
1
162
9
9
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
2
A
SER
2
A
GLU
9
A
GLU
9
A
PRO
14
A
PRO
14
A
LEU
22
A
LEU
22
A
VAL
125
A
VAL
125
A
ASP
132
A
ASP
132
A
GLY
94
A
GLY
94
A
ALA
99
A
ALA
99
A
GLN
109
A
GLN
109
A
THR
114
A
THR
114
A
MET
59
A
MET
59
A
GLY
62
A
GLY
62
A
GLY
48
A
GLY
48
A
VAL
54
A
VAL
54
A
ARG
153
A
ARG
153
A
LEU
162
A
LEU
162
A
SER
2
A
SER
2
A
GLU
9
A
GLU
9
B
SER
2
B
SER
2
B
GLU
9
B
GLU
9
B
PRO
14
B
PRO
14
B
LEU
22
B
LEU
22
B
VAL
125
B
VAL
125
B
ASP
132
B
ASP
132
B
GLY
94
B
GLY
94
B
ALA
99
B
ALA
99
B
GLN
109
B
GLN
109
B
THR
114
B
THR
114
B
MET
59
B
MET
59
B
GLY
62
B
GLY
62
B
GLY
48
B
GLY
48
B
VAL
54
B
VAL
54
B
ARG
153
B
ARG
153
B
LEU
162
B
LEU
162
B
SER
2
B
SER
2
B
GLU
9
B
GLU
9
1
P 1