0.013744 0.007935 0.000000 0.000000 0.015871 0.000000 0.000000 0.000000 0.015136 0.00000 0.00000 0.00000 SER 57 - PRO 58 OMEGA = 304.37 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION Dyda, F. Hickman, A.B. Jenkins, T.M. Engelman, A. Craigie, R. Davies, D.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 72.757 72.757 66.066 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 As O2 -1 136.989 CACODYLATE ION dimethylarsinate non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N AS N 75 N O N 76 N O N 77 N C N 78 N C N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N N N 86 R C N 87 N C N 88 N O N 89 N C N 90 N S N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N N N 100 S C N 101 N C N 102 N O N 103 N C N 104 N C N 105 N C N 106 N O N 107 N N N 108 N O N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N N N 120 S C N 121 N C N 122 N O N 123 N C N 124 N C N 125 N C N 126 N O N 127 N O N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 N C N 140 N C N 141 N O N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 N C Y 153 N C Y 154 N N Y 155 N C Y 156 N C Y 157 N N N 158 N O N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N O N 170 N H N 171 N H N 172 N N N 173 S C N 174 N C N 175 N O N 176 S C N 177 N C N 178 N C N 179 N C N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N N N 195 S C N 196 N C N 197 N O N 198 N C N 199 N C N 200 N C N 201 N C N 202 N O N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N C N 223 N C N 224 N N N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N N N 242 S C N 243 N C N 244 N O N 245 N C N 246 N C N 247 N S N 248 N C N 249 N O N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C Y 271 N C N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C N 289 N C N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C N 306 N O N 307 N O N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 R C N 320 N O N 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N N N 333 S C N 334 N C N 335 N O N 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N N Y 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N C N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C Y 369 N C N 370 N O N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C N 388 N C N 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing Y 150 N sing Y 151 N doub Y 152 N doub N 153 N sing Y 154 N sing N 155 N sing Y 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N doub N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing Y 258 N doub Y 259 N sing Y 260 N sing N 261 N sing Y 262 N doub N 263 N sing Y 264 N doub N 265 N sing Y 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N doub N 323 N sing N 324 N sing N 325 N sing N 326 N sing Y 327 N doub Y 328 N sing Y 329 N sing N 330 N sing Y 331 N doub Y 332 N sing Y 333 N sing N 334 N sing Y 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing Y 355 N doub Y 356 N sing Y 357 N sing N 358 N sing Y 359 N doub N 360 N sing Y 361 N doub N 362 N sing Y 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing US Science SCIEAS 0038 0036-8075 266 1981 1986 7801124 Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases. 1994 10.2210/pdb1itg/pdb pdb_00001itg 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 18194.760 HIV-1 INTEGRASE 1 man polymer 136.989 CACODYLATE ION 2 syn non-polymer 18.015 water 65 nat water no no GSHMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV KAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT DIQTKE GSHMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV KAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT DIQTKE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia sample HIV-1 INTEGRASE 11676 Human immunodeficiency virus 1 562 Escherichia coli T7 PET15B 2.77 55.65 chem_comp_atom chem_comp_bond database_2 pdbx_database_status struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations Other 1 0 1995-05-08 1 1 2008-03-24 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1994-11-21 REL CAC CACODYLATE ION HOH water CAC 65 2 CAC CAC 213 A CAC 130 2 CAC CAC 214 A HOH 0 3 HOH HOH 215 A HOH 1 3 HOH HOH 216 A HOH 2 3 HOH HOH 217 A HOH 3 3 HOH HOH 218 A HOH 4 3 HOH HOH 219 A HOH 5 3 HOH HOH 220 A HOH 6 3 HOH HOH 221 A HOH 7 3 HOH HOH 222 A HOH 8 3 HOH HOH 223 A HOH 9 3 HOH HOH 224 A HOH 10 3 HOH HOH 225 A HOH 11 3 HOH HOH 226 A HOH 12 3 HOH HOH 227 A HOH 13 3 HOH HOH 228 A HOH 14 3 HOH HOH 229 A HOH 15 3 HOH HOH 230 A HOH 16 3 HOH HOH 231 A HOH 17 3 HOH HOH 232 A HOH 18 3 HOH HOH 233 A HOH 19 3 HOH HOH 234 A HOH 20 3 HOH HOH 235 A HOH 21 3 HOH HOH 236 A HOH 22 3 HOH HOH 237 A HOH 23 3 HOH HOH 238 A HOH 24 3 HOH HOH 239 A HOH 25 3 HOH HOH 240 A HOH 26 3 HOH HOH 241 A HOH 27 3 HOH HOH 242 A HOH 28 3 HOH HOH 243 A HOH 29 3 HOH HOH 244 A HOH 30 3 HOH HOH 245 A HOH 31 3 HOH HOH 246 A HOH 32 3 HOH HOH 247 A HOH 33 3 HOH HOH 248 A HOH 34 3 HOH HOH 249 A HOH 35 3 HOH HOH 250 A HOH 36 3 HOH HOH 251 A HOH 37 3 HOH HOH 252 A HOH 38 3 HOH HOH 253 A HOH 39 3 HOH HOH 254 A HOH 40 3 HOH HOH 255 A HOH 41 3 HOH HOH 256 A HOH 42 3 HOH HOH 257 A HOH 43 3 HOH HOH 258 A HOH 44 3 HOH HOH 259 A HOH 45 3 HOH HOH 260 A HOH 46 3 HOH HOH 261 A HOH 47 3 HOH HOH 262 A HOH 48 3 HOH HOH 263 A HOH 49 3 HOH HOH 264 A HOH 50 3 HOH HOH 265 A HOH 51 3 HOH HOH 266 A HOH 52 3 HOH HOH 267 A HOH 53 3 HOH HOH 268 A HOH 54 3 HOH HOH 269 A HOH 55 3 HOH HOH 270 A HOH 56 3 HOH HOH 271 A HOH 57 3 HOH HOH 272 A HOH 58 3 HOH HOH 273 A HOH 59 3 HOH HOH 274 A HOH 60 3 HOH HOH 275 A HOH 61 3 HOH HOH 276 A HOH 62 3 HOH HOH 277 A HOH 63 3 HOH HOH 278 A HOH 64 3 HOH HOH 279 A n 1 47 A n 2 48 A n 3 49 A n 4 50 A n 5 51 A n 6 52 A n 7 53 A n 8 54 A ASP 55 n 9 ASP 55 A CYS 56 n 10 CYS 56 A SER 57 n 11 SER 57 A PRO 58 n 12 PRO 58 A GLY 59 n 13 GLY 59 A ILE 60 n 14 ILE 60 A TRP 61 n 15 TRP 61 A GLN 62 n 16 GLN 62 A LEU 63 n 17 LEU 63 A ASP 64 n 18 ASP 64 A CYS 65 n 19 CYS 65 A THR 66 n 20 THR 66 A HIS 67 n 21 HIS 67 A LEU 68 n 22 LEU 68 A GLU 69 n 23 GLU 69 A GLY 70 n 24 GLY 70 A LYS 71 n 25 LYS 71 A VAL 72 n 26 VAL 72 A ILE 73 n 27 ILE 73 A LEU 74 n 28 LEU 74 A VAL 75 n 29 VAL 75 A ALA 76 n 30 ALA 76 A VAL 77 n 31 VAL 77 A HIS 78 n 32 HIS 78 A VAL 79 n 33 VAL 79 A ALA 80 n 34 ALA 80 A SER 81 n 35 SER 81 A GLY 82 n 36 GLY 82 A TYR 83 n 37 TYR 83 A ILE 84 n 38 ILE 84 A GLU 85 n 39 GLU 85 A ALA 86 n 40 ALA 86 A GLU 87 n 41 GLU 87 A VAL 88 n 42 VAL 88 A ILE 89 n 43 ILE 89 A PRO 90 n 44 PRO 90 A ALA 91 n 45 ALA 91 A GLU 92 n 46 GLU 92 A THR 93 n 47 THR 93 A GLY 94 n 48 GLY 94 A GLN 95 n 49 GLN 95 A GLU 96 n 50 GLU 96 A THR 97 n 51 THR 97 A ALA 98 n 52 ALA 98 A TYR 99 n 53 TYR 99 A PHE 100 n 54 PHE 100 A LEU 101 n 55 LEU 101 A LEU 102 n 56 LEU 102 A LYS 103 n 57 LYS 103 A LEU 104 n 58 LEU 104 A ALA 105 n 59 ALA 105 A GLY 106 n 60 GLY 106 A ARG 107 n 61 ARG 107 A TRP 108 n 62 TRP 108 A PRO 109 n 63 PRO 109 A VAL 110 n 64 VAL 110 A LYS 111 n 65 LYS 111 A THR 112 n 66 THR 112 A VAL 113 n 67 VAL 113 A HIS 114 n 68 HIS 114 A THR 115 n 69 THR 115 A ASP 116 n 70 ASP 116 A ASN 117 n 71 ASN 117 A GLY 118 n 72 GLY 118 A SER 119 n 73 SER 119 A ASN 120 n 74 ASN 120 A PHE 121 n 75 PHE 121 A THR 122 n 76 THR 122 A SER 123 n 77 SER 123 A THR 124 n 78 THR 124 A THR 125 n 79 THR 125 A VAL 126 n 80 VAL 126 A LYS 127 n 81 LYS 127 A ALA 128 n 82 ALA 128 A ALA 129 n 83 ALA 129 A CYS 130 n 84 CYS 130 A TRP 131 n 85 TRP 131 A TRP 132 n 86 TRP 132 A ALA 133 n 87 ALA 133 A GLY 134 n 88 GLY 134 A ILE 135 n 89 ILE 135 A LYS 136 n 90 LYS 136 A GLN 137 n 91 GLN 137 A GLU 138 n 92 GLU 138 A PHE 139 n 93 PHE 139 A GLY 140 n 94 GLY 140 A n 95 141 A n 96 142 A n 97 143 A n 98 144 A n 99 145 A n 100 146 A n 101 147 A n 102 148 A n 103 149 A n 104 150 A n 105 151 A n 106 152 A n 107 153 A MET 154 n 108 MET 154 A ASN 155 n 109 ASN 155 A LYS 156 n 110 LYS 156 A GLU 157 n 111 GLU 157 A LEU 158 n 112 LEU 158 A LYS 159 n 113 LYS 159 A LYS 160 n 114 LYS 160 A ILE 161 n 115 ILE 161 A ILE 162 n 116 ILE 162 A GLY 163 n 117 GLY 163 A GLN 164 n 118 GLN 164 A VAL 165 n 119 VAL 165 A ARG 166 n 120 ARG 166 A ASP 167 n 121 ASP 167 A GLN 168 n 122 GLN 168 A ALA 169 n 123 ALA 169 A GLU 170 n 124 GLU 170 A HIS 171 n 125 HIS 171 A LEU 172 n 126 LEU 172 A LYS 173 n 127 LYS 173 A THR 174 n 128 THR 174 A ALA 175 n 129 ALA 175 A VAL 176 n 130 VAL 176 A GLN 177 n 131 GLN 177 A MET 178 n 132 MET 178 A ALA 179 n 133 ALA 179 A VAL 180 n 134 VAL 180 A PHE 181 n 135 PHE 181 A ILE 182 n 136 ILE 182 A HIS 183 n 137 HIS 183 A ASN 184 n 138 ASN 184 A LYS 185 n 139 LYS 185 A LYS 186 n 140 LYS 186 A ARG 187 n 141 ARG 187 A LYS 188 n 142 LYS 188 A GLY 189 n 143 GLY 189 A GLY 190 n 144 GLY 190 A ILE 191 n 145 ILE 191 A GLY 192 n 146 GLY 192 A GLY 193 n 147 GLY 193 A TYR 194 n 148 TYR 194 A SER 195 n 149 SER 195 A ALA 196 n 150 ALA 196 A GLY 197 n 151 GLY 197 A GLU 198 n 152 GLU 198 A ARG 199 n 153 ARG 199 A ILE 200 n 154 ILE 200 A VAL 201 n 155 VAL 201 A ASP 202 n 156 ASP 202 A ILE 203 n 157 ILE 203 A ILE 204 n 158 ILE 204 A ALA 205 n 159 ALA 205 A THR 206 n 160 THR 206 A ASP 207 n 161 ASP 207 A ILE 208 n 162 ILE 208 A GLN 209 n 163 GLN 209 A n 164 210 A n 165 211 A n 166 212 A author_and_software_defined_assembly PISA,PQS 2 dimeric 3290 -37 12530 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 89 A N ILE 43 A O VAL 72 A O VAL 26 A N VAL 77 A N VAL 31 A O GLN 62 A O GLN 16 A N TRP 61 A N TRP 15 A O THR 112 A O THR 66 A N VAL 113 A N VAL 67 A O LYS 136 A O LYS 90 1 A CG ASP 55 A CG ASP 9 1 Y 1 A OD1 ASP 55 A OD1 ASP 9 1 Y 1 A OD2 ASP 55 A OD2 ASP 9 1 Y 1 A CG GLU 138 A CG GLU 92 1 Y 1 A CD GLU 138 A CD GLU 92 1 Y 1 A OE1 GLU 138 A OE1 GLU 92 1 Y 1 A OE2 GLU 138 A OE2 GLU 92 1 Y 1 A CG GLU 170 A CG GLU 124 1 Y 1 A CD GLU 170 A CD GLU 124 1 Y 1 A OE1 GLU 170 A OE1 GLU 124 1 Y 1 A OE2 GLU 170 A OE2 GLU 124 1 Y 1 A CG LYS 188 A CG LYS 142 1 Y 1 A CD LYS 188 A CD LYS 142 1 Y 1 A CE LYS 188 A CE LYS 142 1 Y 1 A NZ LYS 188 A NZ LYS 142 1 Y 1 A CG1 ILE 191 A CG1 ILE 145 1 Y 1 A CG2 ILE 191 A CG2 ILE 145 1 Y 1 A CD1 ILE 191 A CD1 ILE 145 1 Y 1 A CG1 ILE 208 A CG1 ILE 162 1 Y 1 A CG2 ILE 208 A CG2 ILE 162 1 Y 1 A CD1 ILE 208 A CD1 ILE 162 1 Y 1 A CG GLN 209 A CG GLN 163 1 Y 1 A CD GLN 209 A CD GLN 163 1 Y 1 A OE1 GLN 209 A OE1 GLN 163 1 Y 1 A NE2 GLN 209 A NE2 GLN 163 1 Y 1 A GLY 47 A GLY 1 1 Y 1 A SER 48 A SER 2 1 Y 1 A HIS 49 A HIS 3 1 Y 1 A MET 50 A MET 4 1 Y 1 A HIS 51 A HIS 5 1 Y 1 A GLY 52 A GLY 6 1 Y 1 A GLN 53 A GLN 7 1 Y 1 A VAL 54 A VAL 8 1 Y 1 A ILE 141 A ILE 95 1 Y 1 A PRO 142 A PRO 96 1 Y 1 A TYR 143 A TYR 97 1 Y 1 A ASN 144 A ASN 98 1 Y 1 A PRO 145 A PRO 99 1 Y 1 A GLN 146 A GLN 100 1 Y 1 A SER 147 A SER 101 1 Y 1 A GLN 148 A GLN 102 1 Y 1 A GLY 149 A GLY 103 1 Y 1 A VAL 150 A VAL 104 1 Y 1 A ILE 151 A ILE 105 1 Y 1 A GLU 152 A GLU 106 1 Y 1 A SER 153 A SER 107 1 Y 1 A THR 210 A THR 164 1 Y 1 A LYS 211 A LYS 165 1 Y 1 A GLU 212 A GLU 166 1 Y 1 A GLU 92 -67.95 97.30 1 A GLU 138 54.38 84.01 1 A PHE 139 44.25 14.71 1 A LYS 186 -59.34 109.11 1 A THR 206 -74.16 32.85 1 A ASP 207 43.34 28.24 0.2020000 0.2020000 2.3 6.0 7487 1 2.0 2.3 6.0 65 1137 2 0 1070 0.008 1.507 model building X-PLOR refinement X-PLOR phasing X-PLOR CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HIV-1 INTEGRASE: SIMILARITY TO OTHER POLYNUCLEOTIDYL TRANSFERASES 1 N N 2 N N 2 N N 3 N N A THR 93 A THR 47 HELX_P A TRP 108 A TRP 62 1 1 16 A ASN 117 A ASN 71 HELX_P A THR 122 A THR 76 5 2 6 A SER 123 A SER 77 HELX_P A GLY 134 A GLY 88 1 3 12 A MET 154 A MET 108 HELX_P A ARG 166 A ARG 120 1 4 13 A HIS 171 A HIS 125 HELX_P A LYS 186 A LYS 140 1 5 16 A SER 195 A SER 149 HELX_P A THR 206 A THR 160 1 6 12 metalc 2.110 A CYS 65 A SG CYS 19 1_555 A CAC 213 B AS CAC 1_555 metalc 2.185 A CYS 130 A SG CYS 84 1_555 A CAC 214 C AS CAC 1_555 DNA INTEGRATION DNA INTEGRATION, DNA BINDING (VIRAL) POL_HV1N5 UNP 1 1 P12497 FFREDLAFPQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALL DTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPI ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQ DFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMT KILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIV LPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDL IAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMKGAHTNDVKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWTEY WQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLA LQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDGLVSAGIRKVLFLDGI DKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIE AEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQV RDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKG EGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED 762 927 1ITG 47 212 P12497 A 1 1 166 1 GLU conflict SER 48 1ITG A P12497 UNP 763 2 1 ALA conflict HIS 49 1ITG A P12497 UNP 764 3 1 PHE conflict LYS 185 1ITG A P12497 UNP 900 139 5 anti-parallel anti-parallel parallel parallel A ILE 84 A ILE 38 A ILE 89 A ILE 43 A LYS 71 A LYS 25 A HIS 78 A HIS 32 A ILE 60 A ILE 14 A LEU 68 A LEU 22 A THR 112 A THR 66 A HIS 114 A HIS 68 A LYS 136 A LYS 90 A GLN 137 A GLN 91 BINDING SITE FOR RESIDUE CAC A 213 A CAC 213 Software 2 BINDING SITE FOR RESIDUE CAC A 214 A CAC 214 Software 1 A CYS 65 A CYS 19 2 1_555 A ASN 120 A ASN 74 2 1_555 A CYS 130 A CYS 84 1 1_555 152 P 31 2 1