.029002 .000000 .000000 .000000 .028011 .000000 .000000 .000000 .023170 .00000 .00000 .00000 Chatake, T. Kurihara, K. Tanaka, I. Tsyba, I. Bau, R. Jenney, F.E. Adams, M.W.W. Niimura, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 34.480 35.700 43.160 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking D2 O 20.028 DEUTERATED WATER non-polymer Fe 3 55.845 FE (III) ION non-polymer C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N O N 21 N N N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N N N 32 S C N 33 N C N 34 N O N 35 N C N 36 N C N 37 N O N 38 N O N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N N N 48 R C N 49 N C N 50 N O N 51 N C N 52 N S N 53 N O N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N O N 62 N D N 63 N D N 64 N FE N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N C N 72 N O N 73 N O N 74 N O N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N N N 85 N C N 86 N C N 87 N O N 88 N O N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 S C N 99 N C N 100 N C N 101 N C N 102 N O N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N N N 117 S C N 118 N C N 119 N O N 120 N C N 121 N C N 122 N C N 123 N C N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C N 143 N C N 144 N C N 145 N C N 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 S C N 165 N C N 166 N O N 167 N C Y 168 N C Y 169 N C Y 170 N C Y 171 N C Y 172 N C Y 173 N C N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C N 191 N C N 192 N C N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 S C N 205 N C N 206 N O N 207 N C N 208 N O N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 R C N 222 N O N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C Y 239 N C Y 240 N C Y 241 N C Y 242 N N Y 243 N C Y 244 N C Y 245 N C Y 246 N C Y 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C Y 271 N C N 272 N O N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N N N 286 S C N 287 N C N 288 N O N 289 N C N 290 N C N 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N doub N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N doub N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing Y 163 N doub Y 164 N sing Y 165 N sing N 166 N sing Y 167 N doub N 168 N sing Y 169 N doub N 170 N sing Y 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing Y 232 N doub Y 233 N sing Y 234 N sing N 235 N sing Y 236 N doub Y 237 N sing Y 238 N sing N 239 N sing Y 240 N sing Y 241 N doub N 242 N sing Y 243 N doub N 244 N sing Y 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing Y 260 N doub Y 261 N sing Y 262 N sing N 263 N sing Y 264 N doub N 265 N sing Y 266 N doub N 267 N sing Y 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 60 1364 1373 10.1107/S090744490401176X 15272158 A neutron crystallographic analysis of a rubredoxin mutant at 1.6 A resolution. 2004 10.2210/pdb1iu5/pdb pdb_00001iu5 1.000000 .000000 .000000 .000000 1.000000 .000000 .000000 .000000 1.000000 .00000 .00000 .00000 293 1 IMAGE PLATE 2001-05-29 MAC Science DIP-2000 graphite SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE MACSCIENCE 5863.470 rubredoxin W3Y, I23V, L32I 1 man polymer 55.845 FE (III) ION 1 syn non-polymer 18.015 water 53 nat water no no AKYVCKICGYIYDEDAGDPDNGVSPGTKFEEIPDDWVCPICGAPKSEFEKLED AKYVCKICGYIYDEDAGDPDNGVSPGTKFEEIPDDWVCPICGAPKSEFEKLED A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pyrococcus Escherichia sample 2261 Pyrococcus furiosus 562 Escherichia coli 1 2.26 45.65 VAPOR DIFFUSION Na/K phosphate, VAPOR DIFFUSION database_2 struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Non-polymer description Version format compliance Database references Derived calculations Data collection Refinement description 1 0 2002-08-27 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-11-10 1 4 2023-10-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1IU6 contains Neutron Crystal Structure of the same protein. PDBJ Y PDBJ 2002-02-27 REL REL FE FE (III) ION DOD water 1BRF PDB ENTRY 1BRF PDB experimental model FE 52 2 FE FE 152 A DOD 53 3 DOD DOD 153 A DOD 54 3 DOD DOD 154 A DOD 55 3 DOD DOD 155 A DOD 56 3 DOD DOD 156 A DOD 57 3 DOD DOD 157 A DOD 58 3 DOD DOD 158 A DOD 59 3 DOD DOD 159 A DOD 60 3 DOD DOD 160 A DOD 61 3 DOD DOD 161 A DOD 62 3 DOD DOD 162 A DOD 63 3 DOD DOD 163 A DOD 64 3 DOD DOD 164 A DOD 65 3 DOD DOD 165 A DOD 66 3 DOD DOD 166 A DOD 67 3 DOD DOD 167 A DOD 68 3 DOD DOD 168 A DOD 69 3 DOD DOD 169 A DOD 70 3 DOD DOD 170 A DOD 71 3 DOD DOD 171 A DOD 72 3 DOD DOD 172 A DOD 73 3 DOD DOD 173 A DOD 74 3 DOD DOD 174 A DOD 75 3 DOD DOD 175 A DOD 76 3 DOD DOD 176 A DOD 77 3 DOD DOD 177 A DOD 78 3 DOD DOD 178 A DOD 79 3 DOD DOD 179 A DOD 80 3 DOD DOD 180 A DOD 81 3 DOD DOD 181 A DOD 82 3 DOD DOD 182 A DOD 83 3 DOD DOD 183 A DOD 84 3 DOD DOD 184 A DOD 85 3 DOD DOD 185 A DOD 86 3 DOD DOD 186 A DOD 87 3 DOD DOD 187 A DOD 88 3 DOD DOD 188 A DOD 89 3 DOD DOD 189 A DOD 90 3 DOD DOD 190 A DOD 91 3 DOD DOD 191 A DOD 92 3 DOD DOD 192 A DOD 93 3 DOD DOD 193 A DOD 94 3 DOD DOD 194 A DOD 95 3 DOD DOD 195 A DOD 96 3 DOD DOD 196 A DOD 97 3 DOD DOD 197 A DOD 98 3 DOD DOD 198 A DOD 99 3 DOD DOD 199 A DOD 100 3 DOD DOD 200 A DOD 101 3 DOD DOD 201 A DOD 102 3 DOD DOD 202 A DOD 103 3 DOD DOD 203 A DOD 104 3 DOD DOD 204 A DOD 105 3 DOD DOD 205 A ALA 1 n 1 ALA 1 A LYS 2 n 2 LYS 2 A TYR 3 n 3 TYR 3 A VAL 4 n 4 VAL 4 A CYS 5 n 5 CYS 5 A LYS 6 n 6 LYS 6 A ILE 7 n 7 ILE 7 A CYS 8 n 8 CYS 8 A GLY 9 n 9 GLY 9 A TYR 10 n 10 TYR 10 A ILE 11 n 11 ILE 11 A TYR 12 n 12 TYR 12 A ASP 13 n 13 ASP 13 A GLU 14 n 14 GLU 14 A ASP 15 n 15 ASP 15 A ALA 16 n 16 ALA 16 A GLY 17 n 17 GLY 17 A ASP 18 n 18 ASP 18 A PRO 19 n 19 PRO 19 A ASP 20 n 20 ASP 20 A ASN 21 n 21 ASN 21 A GLY 22 n 22 GLY 22 A VAL 23 n 23 VAL 23 A SER 24 n 24 SER 24 A PRO 25 n 25 PRO 25 A GLY 26 n 26 GLY 26 A THR 27 n 27 THR 27 A LYS 28 n 28 LYS 28 A PHE 29 n 29 PHE 29 A GLU 30 n 30 GLU 30 A GLU 31 n 31 GLU 31 A ILE 32 n 32 ILE 32 A PRO 33 n 33 PRO 33 A ASP 34 n 34 ASP 34 A ASP 35 n 35 ASP 35 A TRP 36 n 36 TRP 36 A VAL 37 n 37 VAL 37 A CYS 38 n 38 CYS 38 A PRO 39 n 39 PRO 39 A ILE 40 n 40 ILE 40 A CYS 41 n 41 CYS 41 A GLY 42 n 42 GLY 42 A ALA 43 n 43 ALA 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A SER 46 n 46 SER 46 A GLU 47 n 47 GLU 47 A PHE 48 n 48 PHE 48 A GLU 49 n 49 GLU 49 A LYS 50 n 50 LYS 50 A LEU 51 n 51 LEU 51 A n 52 52 A n 53 53 A author_defined_assembly 1 monomeric A CYS 5 A SG CYS 5 1_555 A FE 152 B FE FE 1_555 A CYS 8 A SG CYS 8 1_555 113.0 A CYS 5 A SG CYS 5 1_555 A FE 152 B FE FE 1_555 A CYS 38 A SG CYS 38 1_555 110.8 A CYS 8 A SG CYS 8 1_555 A FE 152 B FE FE 1_555 A CYS 38 A SG CYS 38 1_555 102.7 A CYS 5 A SG CYS 5 1_555 A FE 152 B FE FE 1_555 A CYS 41 A SG CYS 41 1_555 104.2 A CYS 8 A SG CYS 8 1_555 A FE 152 B FE FE 1_555 A CYS 41 A SG CYS 41 1_555 114.7 A CYS 38 A SG CYS 38 1_555 A FE 152 B FE FE 1_555 A CYS 41 A SG CYS 41 1_555 111.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 12 A O TYR 12 A N TYR 3 A N TYR 3 A N VAL 4 A N VAL 4 A O GLU 49 A O GLU 49 1 A GLU 52 A GLU 52 1 Y 1 A ASP 53 A ASP 53 1 Y 1 A ASP 18 -151.39 70.14 15.9 0.203 0.187 1.50 10 909 8456 RANDOM 1 isotropic 3.0 MOLECULAR REPLACEMENT PDB ENTRY 1BRF 0.18 0.16 5 0.11 0.06 1.50 10 53 446 1 0 392 0.007 1.4 0.259 0.243 1.59 1140 88.2 13.9 1.50 50.0 1IU5 8876 8876 0.077 1 25.2 4.4 98.6 0.19 1.50 1.55 1 4.3 97.7 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS X-ray Crystal Structure of the rubredoxin mutant from Pyrococcus Furiosus 1 N N 2 N N 3 N N A ASP 18 A ASP 18 HELX_P A GLY 22 A GLY 22 5 1 5 A LYS 28 A LYS 28 HELX_P A ILE 32 A ILE 32 5 2 5 A PRO 44 A PRO 44 HELX_P A SER 46 A SER 46 5 3 3 metalc 2.268 A CYS 5 A SG CYS 5 1_555 A FE 152 B FE FE 1_555 metalc 2.263 A CYS 8 A SG CYS 8 1_555 A FE 152 B FE FE 1_555 metalc 2.305 A CYS 38 A SG CYS 38 1_555 A FE 152 B FE FE 1_555 metalc 2.262 A CYS 41 A SG CYS 41 1_555 A FE 152 B FE FE 1_555 ELECTRON TRANSPORT rubredoxin, mutant, thermostability, ELECTRON TRANSPORT RUBR_PYRFU UNP 1 1 P24297 AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED 1 53 1IU5 1 53 P24297 A 1 1 53 1 TRP engineered mutation TYR 3 1IU5 A P24297 UNP 3 3 1 ILE engineered mutation VAL 23 1IU5 A P24297 UNP 23 23 1 LEU engineered mutation ILE 32 1IU5 A P24297 UNP 32 32 3 anti-parallel anti-parallel A ILE 11 A ILE 11 A ASP 13 A ASP 13 A LYS 2 A LYS 2 A CYS 5 A CYS 5 A PHE 48 A PHE 48 A LYS 50 A LYS 50 BINDING SITE FOR RESIDUE FE A 152 A FE 152 Software 4 A CYS 5 A CYS 5 4 1_555 A CYS 8 A CYS 8 4 1_555 A CYS 38 A CYS 38 4 1_555 A CYS 41 A CYS 41 4 1_555 19 P 21 21 21