0.027153 0.000000 0.000000 0.000000 0.022061 0.000000 0.000000 0.000000 0.017432 0.00000 0.00000 0.00000 Liu, L. Iwata, K. Yohda, M. Miki, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 36.829 45.328 57.366 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N O N 139 N H N 140 N H N 141 N N N 142 S C N 143 N C N 144 N O N 145 S C N 146 N C N 147 N C N 148 N C N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 S C N 165 N C N 166 N O N 167 N C N 168 N C N 169 N C N 170 N C N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 N C N 190 N C N 191 N C N 192 N C N 193 N N N 194 N O N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 N C N 215 N C N 216 N S N 217 N C N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C Y 235 N C Y 236 N C Y 237 N C Y 238 N C Y 239 N C Y 240 N C N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N N N 254 S C N 255 N C N 256 N O N 257 N C N 258 N C N 259 N C N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N O N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 R C N 289 N O N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C Y 311 N C N 312 N O N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C N 330 N C N 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing Y 227 N doub Y 228 N sing Y 229 N sing N 230 N sing Y 231 N doub N 232 N sing Y 233 N doub N 234 N sing Y 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing Y 296 N doub Y 297 N sing Y 298 N sing N 299 N sing Y 300 N doub N 301 N sing Y 302 N doub N 303 N sing Y 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing NE FEBS LETT. FEBLAL 0165 0014-5793 528 114 118 10.1016/S0014-5793(02)03264-7 12297289 Structural insight into gene duplication, gene fusion and domain swapping in the evolution of PLP-independent amino acid racemases 2002 10.2210/pdb1iu9/pdb pdb_00001iu9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 90 1 CCD 2001-02-28 MARRESEARCH a fixed-exit double crystal monochramator SINGLE WAVELENGTH M x-ray 1 1.000 1.0 BL44B2 SPring-8 1.000 SYNCHROTRON SPRING-8 BEAMLINE BL44B2 12176.232 aspartate racemase 5.1.1.13 C-terminal domain 1 man polymer 40.078 CALCIUM ION 1 syn non-polymer 18.015 water 56 nat water no no MIEETAKKVKELGFKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKIL EERGAECIIAGCTEVSVVLKQDDLKVPLIDP MIEETAKKVKELGFKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKIL EERGAECIIAGCTEVSVVLKQDDLKVPLIDP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pyrococcus Pyrococcus horikoshii OT3 Escherichia Escherichia coli sample pPH0670E 70601 Pyrococcus horikoshii 511693 Escherichia coli BL21 BL21 PLASMID pET23c 1 1.97 37.43 VAPOR DIFFUSION, SITTING DROP 6.5 16% Peg8000, 0.10M MES, 0.2M Calcium acetate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293.2K 293.2 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Source and taxonomy Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2003-09-09 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-12-27 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id iJFL contains entire protein. PDBJ Y PDBJ 2002-02-28 REL CA CALCIUM ION HOH water 1JFL C-terminal domain in the intact structure of aspartate racemase from Pyrococcus horikoshii OT3 PDB experimental model CA2 1 2 CA CA 1 A WAT 1 3 HOH HOH 214 A WAT 2 3 HOH HOH 215 A WAT 3 3 HOH HOH 216 A WAT 4 3 HOH HOH 217 A WAT 5 3 HOH HOH 218 A WAT 6 3 HOH HOH 219 A WAT 7 3 HOH HOH 220 A WAT 8 3 HOH HOH 221 A WAT 9 3 HOH HOH 222 A WAT 10 3 HOH HOH 223 A WAT 11 3 HOH HOH 224 A WAT 12 3 HOH HOH 225 A WAT 13 3 HOH HOH 226 A WAT 14 3 HOH HOH 227 A WAT 15 3 HOH HOH 228 A WAT 16 3 HOH HOH 229 A WAT 17 3 HOH HOH 230 A WAT 18 3 HOH HOH 231 A WAT 19 3 HOH HOH 232 A WAT 20 3 HOH HOH 233 A WAT 21 3 HOH HOH 234 A WAT 22 3 HOH HOH 235 A WAT 23 3 HOH HOH 236 A WAT 24 3 HOH HOH 237 A WAT 25 3 HOH HOH 238 A WAT 26 3 HOH HOH 239 A WAT 27 3 HOH HOH 240 A WAT 28 3 HOH HOH 241 A WAT 29 3 HOH HOH 242 A WAT 30 3 HOH HOH 243 A WAT 31 3 HOH HOH 244 A WAT 32 3 HOH HOH 245 A WAT 33 3 HOH HOH 246 A WAT 34 3 HOH HOH 247 A WAT 35 3 HOH HOH 248 A WAT 36 3 HOH HOH 249 A WAT 37 3 HOH HOH 250 A WAT 38 3 HOH HOH 251 A WAT 39 3 HOH HOH 252 A WAT 40 3 HOH HOH 253 A WAT 41 3 HOH HOH 254 A WAT 42 3 HOH HOH 255 A WAT 43 3 HOH HOH 256 A WAT 44 3 HOH HOH 257 A WAT 45 3 HOH HOH 258 A WAT 46 3 HOH HOH 259 A WAT 47 3 HOH HOH 260 A WAT 48 3 HOH HOH 261 A WAT 49 3 HOH HOH 262 A WAT 50 3 HOH HOH 263 A WAT 51 3 HOH HOH 264 A WAT 52 3 HOH HOH 265 A WAT 53 3 HOH HOH 266 A WAT 54 3 HOH HOH 267 A WAT 55 3 HOH HOH 268 A WAT 56 3 HOH HOH 269 A MET 103 n 1 MET 103 A ILE 104 n 2 ILE 104 A GLU 105 n 3 GLU 105 A GLU 106 n 4 GLU 106 A THR 107 n 5 THR 107 A ALA 108 n 6 ALA 108 A LYS 109 n 7 LYS 109 A LYS 110 n 8 LYS 110 A VAL 111 n 9 VAL 111 A LYS 112 n 10 LYS 112 A GLU 113 n 11 GLU 113 A LEU 114 n 12 LEU 114 A GLY 115 n 13 GLY 115 A PHE 116 n 14 PHE 116 A LYS 117 n 15 LYS 117 A LYS 118 n 16 LYS 118 A ALA 119 n 17 ALA 119 A GLY 120 n 18 GLY 120 A LEU 121 n 19 LEU 121 A LEU 122 n 20 LEU 122 A ALA 123 n 21 ALA 123 A THR 124 n 22 THR 124 A THR 125 n 23 THR 125 A GLY 126 n 24 GLY 126 A THR 127 n 25 THR 127 A ILE 128 n 26 ILE 128 A VAL 129 n 27 VAL 129 A SER 130 n 28 SER 130 A GLY 131 n 29 GLY 131 A VAL 132 n 30 VAL 132 A TYR 133 n 31 TYR 133 A GLU 134 n 32 GLU 134 A LYS 135 n 33 LYS 135 A GLU 136 n 34 GLU 136 A PHE 137 n 35 PHE 137 A SER 138 n 36 SER 138 A LYS 139 n 37 LYS 139 A TYR 140 n 38 TYR 140 A GLY 141 n 39 GLY 141 A VAL 142 n 40 VAL 142 A GLU 143 n 41 GLU 143 A ILE 144 n 42 ILE 144 A MET 145 n 43 MET 145 A THR 146 n 44 THR 146 A PRO 147 n 45 PRO 147 A THR 148 n 46 THR 148 A GLU 149 n 47 GLU 149 A ASP 150 n 48 ASP 150 A GLU 151 n 49 GLU 151 A GLN 152 n 50 GLN 152 A LYS 153 n 51 LYS 153 A ASP 154 n 52 ASP 154 A VAL 155 n 53 VAL 155 A MET 156 n 54 MET 156 A ARG 157 n 55 ARG 157 A GLY 158 n 56 GLY 158 A ILE 159 n 57 ILE 159 A TYR 160 n 58 TYR 160 A GLU 161 n 59 GLU 161 A GLY 162 n 60 GLY 162 A VAL 163 n 61 VAL 163 A LYS 164 n 62 LYS 164 A ALA 165 n 63 ALA 165 A GLY 166 n 64 GLY 166 A ASN 167 n 65 ASN 167 A LEU 168 n 66 LEU 168 A LYS 169 n 67 LYS 169 A LEU 170 n 68 LEU 170 A GLY 171 n 69 GLY 171 A ARG 172 n 70 ARG 172 A GLU 173 n 71 GLU 173 A LEU 174 n 72 LEU 174 A LEU 175 n 73 LEU 175 A LEU 176 n 74 LEU 176 A LYS 177 n 75 LYS 177 A THR 178 n 76 THR 178 A ALA 179 n 77 ALA 179 A LYS 180 n 78 LYS 180 A ILE 181 n 79 ILE 181 A LEU 182 n 80 LEU 182 A GLU 183 n 81 GLU 183 A GLU 184 n 82 GLU 184 A ARG 185 n 83 ARG 185 A GLY 186 n 84 GLY 186 A ALA 187 n 85 ALA 187 A GLU 188 n 86 GLU 188 A CYS 189 n 87 CYS 189 A ILE 190 n 88 ILE 190 A ILE 191 n 89 ILE 191 A ALA 192 n 90 ALA 192 A GLY 193 n 91 GLY 193 A CYS 194 n 92 CYS 194 A THR 195 n 93 THR 195 A GLU 196 n 94 GLU 196 A VAL 197 n 95 VAL 197 A SER 198 n 96 SER 198 A VAL 199 n 97 VAL 199 A VAL 200 n 98 VAL 200 A LEU 201 n 99 LEU 201 A LYS 202 n 100 LYS 202 A GLN 203 n 101 GLN 203 A ASP 204 n 102 ASP 204 A ASP 205 n 103 ASP 205 A LEU 206 n 104 LEU 206 A LYS 207 n 105 LYS 207 A VAL 208 n 106 VAL 208 A PRO 209 n 107 PRO 209 A LEU 210 n 108 LEU 210 A ILE 211 n 109 ILE 211 A ASP 212 n 110 ASP 212 A PRO 213 n 111 PRO 213 A author_defined_assembly 1 monomeric A GLY 115 A O GLY 13 3_545 A CA 1 B CA CA 1_555 A ASP 204 A OD2 ASP 102 1_555 149.4 A GLY 115 A O GLY 13 3_545 A CA 1 B CA CA 1_555 A ASP 204 A OD1 ASP 102 1_555 157.0 A ASP 204 A OD2 ASP 102 1_555 A CA 1 B CA CA 1_555 A ASP 204 A OD1 ASP 102 1_555 51.8 A GLY 115 A O GLY 13 3_545 A CA 1 B CA CA 1_555 A HOH 243 C O HOH 1_555 77.6 A ASP 204 A OD2 ASP 102 1_555 A CA 1 B CA CA 1_555 A HOH 243 C O HOH 1_555 132.3 A ASP 204 A OD1 ASP 102 1_555 A CA 1 B CA CA 1_555 A HOH 243 C O HOH 1_555 80.5 A GLY 115 A O GLY 13 3_545 A CA 1 B CA CA 1_555 A HOH 244 C O HOH 1_555 83.7 A ASP 204 A OD2 ASP 102 1_555 A CA 1 B CA CA 1_555 A HOH 244 C O HOH 1_555 85.0 A ASP 204 A OD1 ASP 102 1_555 A CA 1 B CA CA 1_555 A HOH 244 C O HOH 1_555 92.5 A HOH 243 C O HOH 1_555 A CA 1 B CA CA 1_555 A HOH 244 C O HOH 1_555 97.9 A GLY 115 A O GLY 13 3_545 A CA 1 B CA CA 1_555 A HOH 245 C O HOH 1_555 105.2 A ASP 204 A OD2 ASP 102 1_555 A CA 1 B CA CA 1_555 A HOH 245 C O HOH 1_555 89.1 A ASP 204 A OD1 ASP 102 1_555 A CA 1 B CA CA 1_555 A HOH 245 C O HOH 1_555 77.7 A HOH 243 C O HOH 1_555 A CA 1 B CA CA 1_555 A HOH 245 C O HOH 1_555 80.3 A HOH 244 C O HOH 1_555 A CA 1 B CA CA 1_555 A HOH 245 C O HOH 1_555 170.2 A GLY 115 A O GLY 13 3_545 A CA 1 B CA CA 1_555 A HOH 256 C O HOH 1_555 75.6 A ASP 204 A OD2 ASP 102 1_555 A CA 1 B CA CA 1_555 A HOH 256 C O HOH 1_555 81.7 A ASP 204 A OD1 ASP 102 1_555 A CA 1 B CA CA 1_555 A HOH 256 C O HOH 1_555 126.6 A HOH 243 C O HOH 1_555 A CA 1 B CA CA 1_555 A HOH 256 C O HOH 1_555 138.6 A HOH 244 C O HOH 1_555 A CA 1 B CA CA 1_555 A HOH 256 C O HOH 1_555 109.8 A HOH 245 C O HOH 1_555 A CA 1 B CA CA 1_555 A HOH 256 C O HOH 1_555 77.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O MET 145 A O MET 43 A N ALA 119 A N ALA 17 A N GLY 120 A N GLY 18 A O ILE 191 A O ILE 89 A N ILE 190 A N ILE 88 A O ILE 211 A O ILE 109 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 23.2 1.91 0.00 0.00 -5.71 0.00 3.80 0.267 0.015 0.225 0.225 2.04 50 334 6491 6457 5.2 99.4 RANDOM 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT C-terminal domain in the intact structure of aspartate racemase from Pyrococcus horikoshii OT3 Engh & Huber FLAT MODEL 52.7606 0.371495 0.32 0.21 2.04 50 56 907 1 0 850 0.005 1.1 20.9 0.73 1.42 1.50 2.20 2.00 2.27 2.00 3.38 2.50 0.299 0.039 0.232 2.17 60 986 6 5.7 98.3 21.1 2.04 50 1IU9 34260 34023 3.0 3.0 0.108 0.098 1 5.2 5.4 99.3 0.252 2.04 2.15 3.0 837 0.226 1 5.1 96.3 data reduction MOSFLM data scaling SCALA phasing AMoRE refinement CNS 1.0 data scaling CCP4 (SCALA) Crystal structure of the C-terminal domain of aspartate racemase from Pyrococcus horikoshii OT3 1 N N 2 N N 3 N N A MET 103 A MET 1 HELX_P A LEU 114 A LEU 12 1 1 12 A THR 124 A THR 22 HELX_P A GLY 131 A GLY 29 1 2 8 A GLY 131 A GLY 29 HELX_P A LYS 139 A LYS 37 1 3 9 A THR 148 A THR 46 HELX_P A GLU 161 A GLU 59 1 4 14 A ASN 167 A ASN 65 HELX_P A ARG 185 A ARG 83 1 5 19 A CYS 194 A CYS 92 HELX_P A LEU 201 A LEU 99 1 6 8 A LYS 202 A LYS 100 HELX_P A LEU 206 A LEU 104 5 7 5 metalc 2.358 A CA 1 B CA CA 1_555 A GLY 115 A O GLY 13 3_545 metalc 2.377 A CA 1 B CA CA 1_555 A ASP 204 A OD2 ASP 102 1_555 metalc 2.624 A CA 1 B CA CA 1_555 A ASP 204 A OD1 ASP 102 1_555 metalc 2.259 A CA 1 B CA CA 1_555 A HOH 243 C O HOH 1_555 metalc 2.423 A CA 1 B CA CA 1_555 A HOH 244 C O HOH 1_555 metalc 2.492 A CA 1 B CA CA 1_555 A HOH 245 C O HOH 1_555 metalc 2.509 A CA 1 B CA CA 1_555 A HOH 256 C O HOH 1_555 ISOMERASE Aspartate racemase, C-terminal domain, ISOMERASE O58403_PYRHO UNP 1 103 O58403 MIEETAKKVKELGFKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKIL EERGAECIIAGCTEVSVVLKQDDLKVPLIDP 103 213 1IU9 103 213 O58403 A 1 1 111 4 parallel parallel parallel A GLU 143 A GLU 41 A MET 145 A MET 43 A LYS 118 A LYS 16 A LEU 122 A LEU 20 A ILE 190 A ILE 88 A ALA 192 A ALA 90 A LEU 210 A LEU 108 A ILE 211 A ILE 109 BINDING SITE FOR RESIDUE CA A 1 A CA 1 Software 6 A GLY 115 A GLY 13 6 3_545 A ASP 204 A ASP 102 6 1_555 A HOH 243 C HOH 6 1_555 A HOH 244 C HOH 6 1_555 A HOH 245 C HOH 6 1_555 A HOH 256 C HOH 6 1_555 19 P 21 21 21