0.012222
0.000000
0.008322
0.000000
0.019232
0.000000
0.000000
0.000000
0.019454
0.00000
0.00000
0.00000
Wada, T.
Shirouzu, M.
Park, S.-Y.
Tame, J.R.H.
Kuramitsu, S.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
124.25
90.00
81.820
51.998
62.186
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
US
Proteins
PSFGEY
0867
0887-3585
55
778
780
10.1002/prot.20122
15103643
Crystal structure of the conserved hypothetical protein TT1380 from Thermus thermophilus HB8
2004
10.2210/pdb1iuj/pdb
pdb_00001iuj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
CCD
2001-09-13
MARRESEARCH
SI 111
SINGLE WAVELENGTH
M
x-ray
1
0.9800
1.0
BL44B2
SPring-8
0.9800
SYNCHROTRON
SPRING-8 BEAMLINE BL44B2
12272.913
hypothetical protein TT1380
2
man
polymer
65.409
ZINC ION
7
syn
non-polymer
18.015
water
61
nat
water
no
no
MFVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVLRPKNPGDPYVVMTLWESEEAFRAWTESPAFKEGHARSGT
LPKEAFLGPNRLEAFEVVLDSEGRDG
MFVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVLRPKNPGDPYVVMTLWESEEAFRAWTESPAFKEGHARSGT
LPKEAFLGPNRLEAFEVVLDSEGRDG
A,B
ttk003001380.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermus
Escherichia
sample
274
Thermus thermophilus
562
Escherichia coli
plasmid
pET11b
1
1.65
25.3
RIKEN Structural Genomics/Proteomics Initiative
RSGI
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-09-09
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
PDBJ
Y
PDBJ
2002-03-05
REL
REL
ZN
ZINC ION
HOH
water
ZN
2007
2
ZN
ZN
2007
A
ZN
2001
2
ZN
ZN
2001
B
ZN
2002
2
ZN
ZN
2002
B
ZN
2003
2
ZN
ZN
2003
B
ZN
2004
2
ZN
ZN
2004
B
ZN
2005
2
ZN
ZN
2005
B
ZN
2006
2
ZN
ZN
2006
B
HOH
1001
3
HOH
HOH
1001
A
HOH
1002
3
HOH
HOH
1002
A
HOH
1004
3
HOH
HOH
1004
A
HOH
1005
3
HOH
HOH
1005
A
HOH
1006
3
HOH
HOH
1006
A
HOH
1007
3
HOH
HOH
1007
A
HOH
1008
3
HOH
HOH
1008
A
HOH
1009
3
HOH
HOH
1009
A
HOH
1014
3
HOH
HOH
1014
A
HOH
1015
3
HOH
HOH
1015
A
HOH
1017
3
HOH
HOH
1017
A
HOH
1019
3
HOH
HOH
1019
A
HOH
1020
3
HOH
HOH
1020
A
HOH
1021
3
HOH
HOH
1021
A
HOH
1022
3
HOH
HOH
1022
A
HOH
1024
3
HOH
HOH
1024
A
HOH
1025
3
HOH
HOH
1025
A
HOH
1026
3
HOH
HOH
1026
A
HOH
1028
3
HOH
HOH
1028
A
HOH
1029
3
HOH
HOH
1029
A
HOH
1032
3
HOH
HOH
1032
A
HOH
1034
3
HOH
HOH
1034
A
HOH
1036
3
HOH
HOH
1036
A
HOH
1037
3
HOH
HOH
1037
A
HOH
1040
3
HOH
HOH
1040
A
HOH
1041
3
HOH
HOH
1041
A
HOH
1043
3
HOH
HOH
1043
A
HOH
1044
3
HOH
HOH
1044
A
HOH
1047
3
HOH
HOH
1047
A
HOH
1048
3
HOH
HOH
1048
A
HOH
1049
3
HOH
HOH
1049
A
HOH
1050
3
HOH
HOH
1050
A
HOH
1052
3
HOH
HOH
1052
A
HOH
1054
3
HOH
HOH
1054
A
HOH
1055
3
HOH
HOH
1055
A
HOH
1056
3
HOH
HOH
1056
A
HOH
1058
3
HOH
HOH
1058
A
HOH
1003
3
HOH
HOH
1003
B
HOH
1010
3
HOH
HOH
1010
B
HOH
1011
3
HOH
HOH
1011
B
HOH
1012
3
HOH
HOH
1012
B
HOH
1013
3
HOH
HOH
1013
B
HOH
1016
3
HOH
HOH
1016
B
HOH
1018
3
HOH
HOH
1018
B
HOH
1023
3
HOH
HOH
1023
B
HOH
1027
3
HOH
HOH
1027
B
HOH
1030
3
HOH
HOH
1030
B
HOH
1031
3
HOH
HOH
1031
B
HOH
1033
3
HOH
HOH
1033
B
HOH
1035
3
HOH
HOH
1035
B
HOH
1038
3
HOH
HOH
1038
B
HOH
1039
3
HOH
HOH
1039
B
HOH
1042
3
HOH
HOH
1042
B
HOH
1045
3
HOH
HOH
1045
B
HOH
1046
3
HOH
HOH
1046
B
HOH
1051
3
HOH
HOH
1051
B
HOH
1053
3
HOH
HOH
1053
B
HOH
1057
3
HOH
HOH
1057
B
HOH
1059
3
HOH
HOH
1059
B
HOH
1060
3
HOH
HOH
1060
B
HOH
1061
3
HOH
HOH
1061
B
MET
1
n
1
MET
1
A
PHE
2
n
2
PHE
2
A
VAL
3
n
3
VAL
3
A
THR
4
n
4
THR
4
A
MET
5
n
5
MET
5
A
ASN
6
n
6
ASN
6
A
ARG
7
n
7
ARG
7
A
ILE
8
n
8
ILE
8
A
PRO
9
n
9
PRO
9
A
VAL
10
n
10
VAL
10
A
ARG
11
n
11
ARG
11
A
PRO
12
n
12
PRO
12
A
GLU
13
n
13
GLU
13
A
TYR
14
n
14
TYR
14
A
ALA
15
n
15
ALA
15
A
GLU
16
n
16
GLU
16
A
GLN
17
n
17
GLN
17
A
PHE
18
n
18
PHE
18
A
GLU
19
n
19
GLU
19
A
GLU
20
n
20
GLU
20
A
ALA
21
n
21
ALA
21
A
PHE
22
n
22
PHE
22
A
ARG
23
n
23
ARG
23
A
GLN
24
n
24
GLN
24
A
ARG
25
n
25
ARG
25
A
ALA
26
n
26
ALA
26
A
ARG
27
n
27
ARG
27
A
LEU
28
n
28
LEU
28
A
VAL
29
n
29
VAL
29
A
ASP
30
n
30
ASP
30
A
ARG
31
n
31
ARG
31
A
MET
32
n
32
MET
32
A
PRO
33
n
33
PRO
33
A
GLY
34
n
34
GLY
34
A
PHE
35
n
35
PHE
35
A
ILE
36
n
36
ILE
36
A
ARG
37
n
37
ARG
37
A
ASN
38
n
38
ASN
38
A
LEU
39
n
39
LEU
39
A
VAL
40
n
40
VAL
40
A
LEU
41
n
41
LEU
41
A
ARG
42
n
42
ARG
42
A
PRO
43
n
43
PRO
43
A
LYS
44
n
44
LYS
44
A
ASN
45
n
45
ASN
45
A
PRO
46
n
46
PRO
46
A
GLY
47
n
47
GLY
47
A
ASP
48
n
48
ASP
48
A
PRO
49
n
49
PRO
49
A
TYR
50
n
50
TYR
50
A
VAL
51
n
51
VAL
51
A
VAL
52
n
52
VAL
52
A
MET
53
n
53
MET
53
A
THR
54
n
54
THR
54
A
LEU
55
n
55
LEU
55
A
TRP
56
n
56
TRP
56
A
GLU
57
n
57
GLU
57
A
SER
58
n
58
SER
58
A
GLU
59
n
59
GLU
59
A
GLU
60
n
60
GLU
60
A
ALA
61
n
61
ALA
61
A
PHE
62
n
62
PHE
62
A
ARG
63
n
63
ARG
63
A
ALA
64
n
64
ALA
64
A
TRP
65
n
65
TRP
65
A
THR
66
n
66
THR
66
A
GLU
67
n
67
GLU
67
A
SER
68
n
68
SER
68
A
PRO
69
n
69
PRO
69
A
ALA
70
n
70
ALA
70
A
PHE
71
n
71
PHE
71
A
LYS
72
n
72
LYS
72
A
GLU
73
n
73
GLU
73
A
GLY
74
n
74
GLY
74
A
HIS
75
n
75
HIS
75
A
ALA
76
n
76
ALA
76
A
ARG
77
n
77
ARG
77
A
SER
78
n
78
SER
78
A
GLY
79
n
79
GLY
79
A
THR
80
n
80
THR
80
A
LEU
81
n
81
LEU
81
A
PRO
82
n
82
PRO
82
A
LYS
83
n
83
LYS
83
A
GLU
84
n
84
GLU
84
A
ALA
85
n
85
ALA
85
A
PHE
86
n
86
PHE
86
A
LEU
87
n
87
LEU
87
A
GLY
88
n
88
GLY
88
A
PRO
89
n
89
PRO
89
A
ASN
90
n
90
ASN
90
A
ARG
91
n
91
ARG
91
A
LEU
92
n
92
LEU
92
A
GLU
93
n
93
GLU
93
A
ALA
94
n
94
ALA
94
A
PHE
95
n
95
PHE
95
A
GLU
96
n
96
GLU
96
A
VAL
97
n
97
VAL
97
A
VAL
98
n
98
VAL
98
A
LEU
99
n
99
LEU
99
A
ASP
100
n
100
ASP
100
A
SER
101
n
101
SER
101
A
GLU
102
n
102
GLU
102
A
n
103
103
A
n
104
104
A
n
105
105
A
n
106
106
A
MET
1
n
1
MET
1
B
PHE
2
n
2
PHE
2
B
VAL
3
n
3
VAL
3
B
THR
4
n
4
THR
4
B
MET
5
n
5
MET
5
B
ASN
6
n
6
ASN
6
B
ARG
7
n
7
ARG
7
B
ILE
8
n
8
ILE
8
B
PRO
9
n
9
PRO
9
B
VAL
10
n
10
VAL
10
B
ARG
11
n
11
ARG
11
B
PRO
12
n
12
PRO
12
B
GLU
13
n
13
GLU
13
B
TYR
14
n
14
TYR
14
B
ALA
15
n
15
ALA
15
B
GLU
16
n
16
GLU
16
B
GLN
17
n
17
GLN
17
B
PHE
18
n
18
PHE
18
B
GLU
19
n
19
GLU
19
B
GLU
20
n
20
GLU
20
B
ALA
21
n
21
ALA
21
B
PHE
22
n
22
PHE
22
B
ARG
23
n
23
ARG
23
B
GLN
24
n
24
GLN
24
B
ARG
25
n
25
ARG
25
B
ALA
26
n
26
ALA
26
B
ARG
27
n
27
ARG
27
B
LEU
28
n
28
LEU
28
B
VAL
29
n
29
VAL
29
B
ASP
30
n
30
ASP
30
B
ARG
31
n
31
ARG
31
B
MET
32
n
32
MET
32
B
PRO
33
n
33
PRO
33
B
GLY
34
n
34
GLY
34
B
PHE
35
n
35
PHE
35
B
ILE
36
n
36
ILE
36
B
ARG
37
n
37
ARG
37
B
ASN
38
n
38
ASN
38
B
LEU
39
n
39
LEU
39
B
VAL
40
n
40
VAL
40
B
LEU
41
n
41
LEU
41
B
ARG
42
n
42
ARG
42
B
PRO
43
n
43
PRO
43
B
LYS
44
n
44
LYS
44
B
ASN
45
n
45
ASN
45
B
PRO
46
n
46
PRO
46
B
GLY
47
n
47
GLY
47
B
ASP
48
n
48
ASP
48
B
PRO
49
n
49
PRO
49
B
TYR
50
n
50
TYR
50
B
VAL
51
n
51
VAL
51
B
VAL
52
n
52
VAL
52
B
MET
53
n
53
MET
53
B
THR
54
n
54
THR
54
B
LEU
55
n
55
LEU
55
B
TRP
56
n
56
TRP
56
B
GLU
57
n
57
GLU
57
B
SER
58
n
58
SER
58
B
GLU
59
n
59
GLU
59
B
GLU
60
n
60
GLU
60
B
ALA
61
n
61
ALA
61
B
PHE
62
n
62
PHE
62
B
ARG
63
n
63
ARG
63
B
ALA
64
n
64
ALA
64
B
TRP
65
n
65
TRP
65
B
THR
66
n
66
THR
66
B
GLU
67
n
67
GLU
67
B
SER
68
n
68
SER
68
B
PRO
69
n
69
PRO
69
B
ALA
70
n
70
ALA
70
B
PHE
71
n
71
PHE
71
B
LYS
72
n
72
LYS
72
B
GLU
73
n
73
GLU
73
B
GLY
74
n
74
GLY
74
B
HIS
75
n
75
HIS
75
B
ALA
76
n
76
ALA
76
B
ARG
77
n
77
ARG
77
B
SER
78
n
78
SER
78
B
GLY
79
n
79
GLY
79
B
THR
80
n
80
THR
80
B
LEU
81
n
81
LEU
81
B
PRO
82
n
82
PRO
82
B
LYS
83
n
83
LYS
83
B
GLU
84
n
84
GLU
84
B
ALA
85
n
85
ALA
85
B
PHE
86
n
86
PHE
86
B
LEU
87
n
87
LEU
87
B
GLY
88
n
88
GLY
88
B
PRO
89
n
89
PRO
89
B
ASN
90
n
90
ASN
90
B
ARG
91
n
91
ARG
91
B
LEU
92
n
92
LEU
92
B
GLU
93
n
93
GLU
93
B
ALA
94
n
94
ALA
94
B
PHE
95
n
95
PHE
95
B
GLU
96
n
96
GLU
96
B
VAL
97
n
97
VAL
97
B
VAL
98
n
98
VAL
98
B
LEU
99
n
99
LEU
99
B
ASP
100
n
100
ASP
100
B
SER
101
n
101
SER
101
B
GLU
102
n
102
GLU
102
B
GLY
103
n
103
GLY
103
B
n
104
104
B
n
105
105
B
n
106
106
B
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
4
tetrameric
software_defined_assembly
PISA
2
dimeric
3340
-70
10920
8650
-165
19860
1090
-227
13650
A
GLU
16
A
OE1
GLU
16
2_556
B
ZN
2001
D
ZN
ZN
1_555
A
GLU
60
A
OE2
GLU
60
3_455
107.7
A
GLU
16
A
OE1
GLU
16
2_556
B
ZN
2001
D
ZN
ZN
1_555
B
GLU
67
B
OE1
GLU
67
1_555
113.5
A
GLU
60
A
OE2
GLU
60
3_455
B
ZN
2001
D
ZN
ZN
1_555
B
GLU
67
B
OE1
GLU
67
1_555
108.1
A
GLU
67
A
OE1
GLU
67
3_455
B
ZN
2003
F
ZN
ZN
1_555
B
GLU
60
B
OE1
GLU
60
1_555
122.3
A
GLU
67
A
OE1
GLU
67
3_455
B
ZN
2003
F
ZN
ZN
1_555
B
GLU
60
B
OE2
GLU
60
1_555
101.6
B
GLU
60
B
OE1
GLU
60
1_555
B
ZN
2003
F
ZN
ZN
1_555
B
GLU
60
B
OE2
GLU
60
1_555
51.4
B
HIS
75
B
NE2
HIS
75
1_555
B
ZN
2006
I
ZN
ZN
1_555
B
HOH
1046
K
O
HOH
1_555
99.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_556
-x,y,-z+1
crystal symmetry operation
-34.9985872336
0.0000000000
51.4023101392
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_455
x-1/2,y+1/2,z
crystal symmetry operation
-40.9100000000
25.9990000000
0.0000000000
A
N
PHE
2
A
N
PHE
2
A
O
TRP
56
A
O
TRP
56
A
O
LEU
55
A
O
LEU
55
A
N
ARG
37
A
N
ARG
37
A
N
ARG
42
A
N
ARG
42
B
O
GLU
96
B
O
GLU
96
B
O
ARG
91
B
O
ARG
91
B
N
ARG
7
B
N
ARG
7
B
N
PHE
2
B
N
PHE
2
B
O
TRP
56
B
O
TRP
56
B
O
LEU
55
B
O
LEU
55
B
N
ARG
37
B
N
ARG
37
B
O
ARG
42
B
O
ARG
42
A
N
GLU
96
A
N
GLU
96
A
O
GLU
93
A
O
GLU
93
A
N
MET
5
A
N
MET
5
1
A
GLY
103
A
GLY
103
1
Y
1
A
ARG
104
A
ARG
104
1
Y
1
A
ASP
105
A
ASP
105
1
Y
1
A
GLY
106
A
GLY
106
1
Y
1
B
ARG
104
B
ARG
104
1
Y
1
B
ASP
105
B
ASP
105
1
Y
1
B
GLY
106
B
GLY
106
1
Y
1
-3.27
0.50
120.30
117.03
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
25
25
25
N
1
A
HIS
75
-88.09
43.90
1
A
ALA
76
-141.58
-30.08
1
A
SER
78
-172.22
-33.82
1
A
LYS
83
-69.09
-137.30
1
B
ALA
76
-62.60
3.47
1
B
ARG
77
-67.44
-92.91
1
B
SER
78
-65.51
5.96
22.275
0.14
0.00
0.05
0.42
0.00
-0.50
0.925
0.908
0.26408
0.23335
0.23484
1.60
19.07
1348
26208
4.9
100.00
1.937
0.071
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
0.115
0.111
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
0.30
0.26
5.00
0.24
0.28
1.60
19.07
61
1746
7
0
1678
0.014
0.022
1726
1.494
1.954
2335
6.224
5.000
203
0.106
0.200
238
0.006
0.020
1374
0.219
0.200
831
0.143
0.200
73
0.088
0.200
4
0.188
0.200
38
0.117
0.200
5
0.989
1.500
1032
1.782
2.000
1667
2.767
3.000
694
4.409
4.500
668
0.242
0.026
0.221
1.641
94
1791
20
4.9
91.1
1.60
20.0
1IUJ
27602
0.0
0.078
1
35.06
4.29
96.4
0.177
1.60
1.66
3.22
89.8
data collection
HKL-2000
data scaling
SCALEPACK
refinement
REFMAC
data reduction
HKL-2000
The structure of TT1380 protein from thermus thermophilus
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
ARG
11
A
ARG
11
HELX_P
A
GLU
13
A
GLU
13
5
1
3
A
TYR
14
A
TYR
14
HELX_P
A
ALA
26
A
ALA
26
1
2
13
A
ARG
27
A
ARG
27
HELX_P
A
ASP
30
A
ASP
30
5
3
4
A
SER
58
A
SER
58
HELX_P
A
GLU
67
A
GLU
67
1
4
10
A
SER
68
A
SER
68
HELX_P
A
HIS
75
A
HIS
75
1
5
8
B
ARG
11
B
ARG
11
HELX_P
B
GLU
13
B
GLU
13
5
6
3
B
TYR
14
B
TYR
14
HELX_P
B
ASP
30
B
ASP
30
1
7
17
B
SER
58
B
SER
58
HELX_P
B
GLU
67
B
GLU
67
1
8
10
B
SER
68
B
SER
68
HELX_P
B
HIS
75
B
HIS
75
1
9
8
B
PRO
82
B
PRO
82
HELX_P
B
PHE
86
B
PHE
86
5
10
5
metalc
1.925
A
GLU
16
A
OE1
GLU
16
2_556
B
ZN
2001
D
ZN
ZN
1_555
metalc
1.977
A
GLU
60
A
OE2
GLU
60
3_455
B
ZN
2001
D
ZN
ZN
1_555
metalc
1.957
A
GLU
67
A
OE1
GLU
67
3_455
B
ZN
2003
F
ZN
ZN
1_555
metalc
2.241
A
HIS
75
A
NE2
HIS
75
1_555
A
ZN
2007
C
ZN
ZN
1_555
metalc
1.907
B
GLU
60
B
OE1
GLU
60
1_555
B
ZN
2003
F
ZN
ZN
1_555
metalc
2.769
B
GLU
60
B
OE2
GLU
60
1_555
B
ZN
2003
F
ZN
ZN
1_555
metalc
1.947
B
GLU
67
B
OE1
GLU
67
1_555
B
ZN
2001
D
ZN
ZN
1_555
metalc
2.024
B
HIS
75
B
NE2
HIS
75
1_555
B
ZN
2006
I
ZN
ZN
1_555
metalc
1.912
B
HOH
1027
K
O
HOH
1_555
B
ZN
2002
E
ZN
ZN
1_555
metalc
2.373
B
HOH
1046
K
O
HOH
1_555
B
ZN
2006
I
ZN
ZN
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
STRUCTURAL GENOMICS, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION
P83693_THETH
UNP
1
1
P83693
1
106
1IUJ
1
106
P83693
A
1
1
106
1
106
1IUJ
1
106
P83693
B
1
1
106
9
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
2
A
PHE
2
A
ILE
8
A
ILE
8
A
TYR
50
A
TYR
50
A
TRP
56
A
TRP
56
A
PHE
35
A
PHE
35
A
PRO
43
A
PRO
43
B
ARG
91
B
ARG
91
B
ASP
100
B
ASP
100
B
PHE
2
B
PHE
2
B
ILE
8
B
ILE
8
B
TYR
50
B
TYR
50
B
TRP
56
B
TRP
56
B
PHE
35
B
PHE
35
B
PRO
43
B
PRO
43
A
ARG
91
A
ARG
91
A
ASP
100
A
ASP
100
A
PHE
2
A
PHE
2
A
ILE
8
A
ILE
8
BINDING SITE FOR RESIDUE ZN B 2001
B
ZN
2001
Software
4
BINDING SITE FOR RESIDUE ZN B 2002
B
ZN
2002
Software
6
BINDING SITE FOR RESIDUE ZN B 2003
B
ZN
2003
Software
6
BINDING SITE FOR RESIDUE ZN B 2004
B
ZN
2004
Software
3
BINDING SITE FOR RESIDUE ZN B 2005
B
ZN
2005
Software
3
BINDING SITE FOR RESIDUE ZN B 2006
B
ZN
2006
Software
2
BINDING SITE FOR RESIDUE ZN A 2007
A
ZN
2007
Software
4
A
GLU
16
A
GLU
16
4
2_556
A
GLU
60
A
GLU
60
4
3_455
B
GLU
67
B
GLU
67
4
1_555
B
ZN
2002
E
ZN
4
1_555
A
GLU
60
A
GLU
60
6
3_455
B
GLU
60
B
GLU
60
6
1_555
B
HOH
1027
K
HOH
6
1_555
B
ZN
2001
D
ZN
6
1_555
B
ZN
2003
F
ZN
6
1_555
B
ZN
2005
H
ZN
6
1_555
A
GLU
67
A
GLU
67
6
3_455
B
GLU
60
B
GLU
60
6
1_555
B
ARG
63
B
ARG
63
6
1_555
B
ZN
2002
E
ZN
6
1_555
B
ZN
2004
G
ZN
6
1_555
B
ZN
2005
H
ZN
6
1_555
B
ARG
63
B
ARG
63
3
1_555
B
ZN
2003
F
ZN
3
1_555
B
ZN
2005
H
ZN
3
1_555
B
ZN
2002
E
ZN
3
1_555
B
ZN
2003
F
ZN
3
1_555
B
ZN
2004
G
ZN
3
1_555
B
HIS
75
B
HIS
75
2
1_555
B
HOH
1046
K
HOH
2
1_555
A
ARG
25
A
ARG
25
4
1_555
A
HIS
75
A
HIS
75
4
1_555
A
HOH
1001
J
HOH
4
1_555
A
HOH
1017
J
HOH
4
1_555
5
C 1 2 1