1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Inoue, M.
Kigawa, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Solution structure of the cullin-3 homologue
10.2210/pdb1iuy/pdb
pdb_00001iuy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
10812.579
cullin-3 homologue
1
man
polymer
no
no
MAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLAR
TPEDRKVYTYVA
MAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLAR
TPEDRKVYTYVA
A
mmk001000556.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
cell-free protein synthesis
10090
Mus musculus
plasmid
P011101-16
RIKEN Structural Genomics/Proteomics Initiative
RSGI
database_2
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Database references
1
0
2003-10-07
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
1
4
2022-12-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
PDBJ
Y
PDBJ
2002-03-08
REL
The structure was determined using triple-resonance NMR spectroscopy.
target function
200
10
3D_13C-separated_NOESY
3D_15N-separated_NOESY
100mM
6.0
ambient
298
K
torsion angle dynamics,simulated annealing
1
lowest energy
1mM protein U-15N,13C; 20mM sodium phosphate buffer; 100mM NaCl; 90% H2O,10% D2O
90% H2O/10% D2O
Delaglio
processing
NMRPipe
1.8
Brunger
structure solution
CNS
1.0
Brunger
refinement
CNS
1.0
600
Bruker
AVANCE
MET
1
n
1
MET
1
A
ALA
2
n
2
ALA
2
A
ALA
3
n
3
ALA
3
A
LYS
4
n
4
LYS
4
A
GLN
5
n
5
GLN
5
A
GLY
6
n
6
GLY
6
A
GLU
7
n
7
GLU
7
A
SER
8
n
8
SER
8
A
ASP
9
n
9
ASP
9
A
PRO
10
n
10
PRO
10
A
GLU
11
n
11
GLU
11
A
ARG
12
n
12
ARG
12
A
LYS
13
n
13
LYS
13
A
GLU
14
n
14
GLU
14
A
THR
15
n
15
THR
15
A
ARG
16
n
16
ARG
16
A
GLN
17
n
17
GLN
17
A
LYS
18
n
18
LYS
18
A
VAL
19
n
19
VAL
19
A
ASP
20
n
20
ASP
20
A
ASP
21
n
21
ASP
21
A
ASP
22
n
22
ASP
22
A
ARG
23
n
23
ARG
23
A
LYS
24
n
24
LYS
24
A
HIS
25
n
25
HIS
25
A
GLU
26
n
26
GLU
26
A
ILE
27
n
27
ILE
27
A
GLU
28
n
28
GLU
28
A
ALA
29
n
29
ALA
29
A
ALA
30
n
30
ALA
30
A
ILE
31
n
31
ILE
31
A
VAL
32
n
32
VAL
32
A
ARG
33
n
33
ARG
33
A
ILE
34
n
34
ILE
34
A
MET
35
n
35
MET
35
A
LYS
36
n
36
LYS
36
A
SER
37
n
37
SER
37
A
ARG
38
n
38
ARG
38
A
LYS
39
n
39
LYS
39
A
LYS
40
n
40
LYS
40
A
MET
41
n
41
MET
41
A
GLN
42
n
42
GLN
42
A
HIS
43
n
43
HIS
43
A
ASN
44
n
44
ASN
44
A
VAL
45
n
45
VAL
45
A
LEU
46
n
46
LEU
46
A
VAL
47
n
47
VAL
47
A
ALA
48
n
48
ALA
48
A
GLU
49
n
49
GLU
49
A
VAL
50
n
50
VAL
50
A
THR
51
n
51
THR
51
A
GLN
52
n
52
GLN
52
A
GLN
53
n
53
GLN
53
A
LEU
54
n
54
LEU
54
A
LYS
55
n
55
LYS
55
A
ALA
56
n
56
ALA
56
A
ARG
57
n
57
ARG
57
A
PHE
58
n
58
PHE
58
A
LEU
59
n
59
LEU
59
A
PRO
60
n
60
PRO
60
A
SER
61
n
61
SER
61
A
PRO
62
n
62
PRO
62
A
VAL
63
n
63
VAL
63
A
VAL
64
n
64
VAL
64
A
ILE
65
n
65
ILE
65
A
LYS
66
n
66
LYS
66
A
LYS
67
n
67
LYS
67
A
ARG
68
n
68
ARG
68
A
ILE
69
n
69
ILE
69
A
GLU
70
n
70
GLU
70
A
GLY
71
n
71
GLY
71
A
LEU
72
n
72
LEU
72
A
ILE
73
n
73
ILE
73
A
GLU
74
n
74
GLU
74
A
ARG
75
n
75
ARG
75
A
GLU
76
n
76
GLU
76
A
TYR
77
n
77
TYR
77
A
LEU
78
n
78
LEU
78
A
ALA
79
n
79
ALA
79
A
ARG
80
n
80
ARG
80
A
THR
81
n
81
THR
81
A
PRO
82
n
82
PRO
82
A
GLU
83
n
83
GLU
83
A
ASP
84
n
84
ASP
84
A
ARG
85
n
85
ARG
85
A
LYS
86
n
86
LYS
86
A
VAL
87
n
87
VAL
87
A
TYR
88
n
88
TYR
88
A
THR
89
n
89
THR
89
A
TYR
90
n
90
TYR
90
A
VAL
91
n
91
VAL
91
A
ALA
92
n
92
ALA
92
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
MET
41
A
N
MET
41
A
O
TYR
88
A
O
TYR
88
A
O
THR
89
A
O
THR
89
A
N
ALA
79
A
N
ALA
79
1
A
O
ALA
92
A
O
ALA
92
1
Y
2
A
O
ALA
92
A
O
ALA
92
1
Y
3
A
O
ALA
92
A
O
ALA
92
1
Y
4
A
O
ALA
92
A
O
ALA
92
1
Y
5
A
O
ALA
92
A
O
ALA
92
1
Y
6
A
O
ALA
92
A
O
ALA
92
1
Y
7
A
O
ALA
92
A
O
ALA
92
1
Y
8
A
O
ALA
92
A
O
ALA
92
1
Y
9
A
O
ALA
92
A
O
ALA
92
1
Y
10
A
O
ALA
92
A
O
ALA
92
1
Y
1
A
LYS
4
61.75
153.36
1
A
GLN
5
-110.68
-169.49
1
A
ASP
9
-178.67
-61.55
1
A
GLU
11
-169.49
38.00
1
A
THR
15
-139.30
-57.57
1
A
ARG
16
60.32
76.18
1
A
ASP
22
-177.75
-39.07
1
A
LYS
24
-98.40
30.16
1
A
HIS
25
-137.54
-44.13
1
A
LYS
39
68.46
-67.87
1
A
LEU
54
-115.99
50.47
1
A
ARG
57
-94.20
-71.07
2
A
ALA
2
60.61
161.53
2
A
ALA
3
60.81
95.87
2
A
GLU
7
61.94
151.85
2
A
SER
8
-169.93
97.24
2
A
ASP
9
-116.61
79.67
2
A
GLU
11
60.64
111.12
2
A
LYS
13
63.67
139.79
2
A
GLU
14
-154.83
44.52
2
A
THR
15
-154.24
43.42
2
A
LYS
18
-162.57
119.58
2
A
VAL
19
-130.44
-68.85
2
A
ASP
21
59.84
73.85
2
A
LYS
24
-107.84
52.77
2
A
HIS
25
-151.18
-46.73
2
A
LYS
39
64.75
-76.30
2
A
LEU
54
-96.18
42.20
2
A
SER
61
-179.87
97.25
2
A
ALA
79
-176.90
140.36
2
A
ASP
84
174.43
151.38
2
A
VAL
91
-109.92
55.20
3
A
GLU
7
-147.42
-49.34
3
A
SER
8
64.30
-79.31
3
A
LYS
13
-100.79
79.53
3
A
THR
15
-137.52
-51.43
3
A
GLN
17
-137.56
-53.42
3
A
VAL
19
-127.98
-57.02
3
A
ASP
20
60.31
176.05
3
A
LYS
39
63.56
-79.59
3
A
LEU
54
-102.77
40.37
3
A
PHE
58
-166.59
-167.69
3
A
ARG
85
-99.46
31.70
3
A
LYS
86
-147.94
25.73
4
A
ALA
3
-146.70
29.29
4
A
LYS
4
58.12
84.36
4
A
ARG
12
64.90
149.95
4
A
THR
15
-142.32
36.75
4
A
GLN
17
62.48
-81.05
4
A
ASP
22
-123.92
-63.16
4
A
ARG
23
69.89
-59.65
4
A
LYS
39
69.05
-67.43
4
A
PRO
60
-69.99
-167.99
5
A
ALA
2
63.65
128.29
5
A
ALA
3
61.30
173.62
5
A
GLN
5
61.25
154.76
5
A
GLU
11
-167.56
115.45
5
A
ARG
12
-171.68
48.58
5
A
VAL
19
-129.72
-58.37
5
A
ASP
21
61.51
169.67
5
A
LYS
39
66.94
-71.82
5
A
LEU
54
-99.19
40.64
5
A
SER
61
61.56
115.61
5
A
ARG
85
-98.50
35.23
6
A
ALA
3
-164.55
32.27
6
A
GLN
5
60.64
170.60
6
A
ASP
9
-165.80
66.12
6
A
PRO
10
-54.99
-168.51
6
A
GLU
11
-97.09
39.86
6
A
LYS
13
60.20
103.91
6
A
GLU
14
-169.38
53.05
6
A
ARG
16
-161.38
85.71
6
A
ARG
23
-153.54
-70.82
6
A
LYS
39
63.10
-80.20
6
A
LEU
54
-97.95
33.39
6
A
PRO
60
-72.37
-169.14
7
A
ALA
2
-173.45
133.01
7
A
ALA
3
-97.79
-77.86
7
A
ARG
12
-153.80
33.19
7
A
THR
15
-177.95
-39.56
7
A
ARG
16
62.83
158.11
7
A
ASP
20
-169.98
89.40
7
A
ARG
23
-161.60
98.93
7
A
SER
37
-99.47
-60.77
7
A
LYS
39
68.51
-70.37
7
A
PHE
58
-170.45
-163.84
7
A
SER
61
62.93
119.16
8
A
ALA
2
-134.15
-70.45
8
A
LYS
4
-149.05
31.64
8
A
GLN
5
-161.26
86.09
8
A
GLU
7
-176.44
110.80
8
A
GLU
11
59.57
76.25
8
A
LYS
13
-160.78
-62.98
8
A
GLU
14
59.80
84.13
8
A
GLN
17
64.21
-76.36
8
A
ASP
20
63.78
106.81
8
A
ASP
22
-178.21
-39.01
8
A
LYS
24
-98.16
37.37
8
A
HIS
25
-135.75
-44.03
8
A
LYS
39
67.55
-70.01
8
A
LEU
54
-108.82
48.44
8
A
PHE
58
-177.02
-172.66
8
A
SER
61
63.56
125.74
9
A
ALA
3
62.95
-80.19
9
A
LYS
4
60.29
-175.58
9
A
GLN
5
60.50
103.62
9
A
ASP
9
-166.52
97.90
9
A
GLU
11
-153.91
29.81
9
A
ARG
16
63.41
125.81
9
A
ASP
21
-59.69
-177.10
9
A
ASP
22
-161.28
-44.75
9
A
LYS
24
-92.38
47.31
9
A
HIS
25
-147.26
-46.65
9
A
LYS
39
65.57
-78.50
9
A
GLU
76
62.42
70.03
9
A
TYR
77
-142.31
-54.50
9
A
ALA
79
-170.90
147.11
10
A
ALA
2
60.41
178.51
10
A
GLU
7
60.08
167.19
10
A
ASP
9
-174.30
-62.95
10
A
GLU
11
-143.63
39.57
10
A
ARG
16
60.23
176.65
10
A
GLN
17
60.96
96.43
10
A
ASP
21
-149.20
35.57
10
A
SER
37
-106.61
-62.80
10
A
LYS
39
66.28
-76.65
10
A
SER
61
70.81
141.91
10
A
LYS
86
-95.88
37.83
Solution structure of the cullin-3 homologue
1
N
N
A
HIS
25
A
HIS
25
HELX_P
A
LYS
39
A
LYS
39
1
1
15
A
HIS
43
A
HIS
43
HELX_P
A
LEU
54
A
LEU
54
1
2
12
A
SER
61
A
SER
61
HELX_P
A
ARG
75
A
ARG
75
1
3
15
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
winged helix, STRUCTURAL GENOMICS, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION
CUL3_MOUSE
UNP
1
1
Q9JLV5
AAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLART
PEDRKVYTYVA
1
91
1IUY
2
92
Q9JLV5
A
1
2
92
1
initiating methionine
MET
1
1IUY
A
Q9JLV5
UNP
1
3
anti-parallel
anti-parallel
A
LYS
40
A
LYS
40
A
GLN
42
A
GLN
42
A
VAL
87
A
VAL
87
A
TYR
90
A
TYR
90
A
LEU
78
A
LEU
78
A
ARG
80
A
ARG
80
1
P 1