0.020747
0.000000
0.000000
0.000000
0.017018
0.000000
0.000000
0.000000
0.014420
0.00000
0.00000
0.00000
Chakrabarti, C.
Biswas, S.
Dattagupta, J.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
48.200
58.760
69.350
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O3 S2 -2
112.128
THIOSULFATE
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
S
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
US
Proteins
PSFGEY
0867
0887-3585
51
489
497
10.1002/prot.10319
12784208
Proposed amino acid sequence and the 1.63 A X-ray crystal structure of a plant cysteine protease, ervatamin B: Some insights into the structural basis of its stability and substrate specificity
2003
10.2210/pdb1iwd/pdb
pdb_00001iwd
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
osmic Max-Flux confocal optics
IMAGE PLATE
1999-03-09
MARRESEARCH
Osmic Max-Flux optic system
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU RU200
23200.805
ERVATAMIN B
1
nat
polymer
112.128
THIOSULFATE
1
syn
non-polymer
18.015
water
208
nat
water
no
no
LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGG
IDTQQNYPYSAVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGV
VIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTKA
LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGG
IDTQQNYPYSAVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGV
VIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTKA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Tabernaemontana
sample
52861
Tabernaemontana divaricata
1
1.90
34.79
VAPOR DIFFUSION, HANGING DROP
8.5
PEG4000, Tris HCl, Magnesium Chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
292
citation_author
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Data collection
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-05-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-06-27
1
4
2023-10-25
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2002-05-02
REL
REL
THJ
THIOSULFATE
HOH
water
2ACT
PDB entry 2ACT
PDB
experimental model
THJ
601
2
THJ
THJ
601
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
366
3
HOH
HOH
366
A
HOH
367
3
HOH
HOH
367
A
HOH
368
3
HOH
HOH
368
A
HOH
369
3
HOH
HOH
369
A
HOH
370
3
HOH
HOH
370
A
HOH
371
3
HOH
HOH
371
A
HOH
372
3
HOH
HOH
372
A
HOH
373
3
HOH
HOH
373
A
HOH
374
3
HOH
HOH
374
A
HOH
375
3
HOH
HOH
375
A
HOH
376
3
HOH
HOH
376
A
HOH
377
3
HOH
HOH
377
A
HOH
378
3
HOH
HOH
378
A
HOH
379
3
HOH
HOH
379
A
HOH
380
3
HOH
HOH
380
A
HOH
381
3
HOH
HOH
381
A
HOH
382
3
HOH
HOH
382
A
HOH
383
3
HOH
HOH
383
A
HOH
384
3
HOH
HOH
384
A
HOH
385
3
HOH
HOH
385
A
HOH
386
3
HOH
HOH
386
A
HOH
387
3
HOH
HOH
387
A
HOH
388
3
HOH
HOH
388
A
HOH
389
3
HOH
HOH
389
A
HOH
390
3
HOH
HOH
390
A
HOH
392
3
HOH
HOH
392
A
HOH
393
3
HOH
HOH
393
A
HOH
394
3
HOH
HOH
394
A
HOH
395
3
HOH
HOH
395
A
HOH
396
3
HOH
HOH
396
A
HOH
397
3
HOH
HOH
397
A
HOH
398
3
HOH
HOH
398
A
HOH
399
3
HOH
HOH
399
A
HOH
400
3
HOH
HOH
400
A
HOH
401
3
HOH
HOH
401
A
HOH
402
3
HOH
HOH
402
A
HOH
403
3
HOH
HOH
403
A
HOH
404
3
HOH
HOH
404
A
HOH
405
3
HOH
HOH
405
A
HOH
406
3
HOH
HOH
406
A
HOH
407
3
HOH
HOH
407
A
HOH
408
3
HOH
HOH
408
A
HOH
409
3
HOH
HOH
409
A
HOH
410
3
HOH
HOH
410
A
HOH
411
3
HOH
HOH
411
A
HOH
412
3
HOH
HOH
412
A
HOH
413
3
HOH
HOH
413
A
HOH
414
3
HOH
HOH
414
A
HOH
415
3
HOH
HOH
415
A
HOH
416
3
HOH
HOH
416
A
HOH
417
3
HOH
HOH
417
A
HOH
418
3
HOH
HOH
418
A
HOH
419
3
HOH
HOH
419
A
HOH
420
3
HOH
HOH
420
A
HOH
421
3
HOH
HOH
421
A
HOH
422
3
HOH
HOH
422
A
HOH
423
3
HOH
HOH
423
A
HOH
424
3
HOH
HOH
424
A
HOH
425
3
HOH
HOH
425
A
HOH
426
3
HOH
HOH
426
A
HOH
427
3
HOH
HOH
427
A
HOH
428
3
HOH
HOH
428
A
HOH
429
3
HOH
HOH
429
A
HOH
430
3
HOH
HOH
430
A
HOH
431
3
HOH
HOH
431
A
HOH
432
3
HOH
HOH
432
A
HOH
433
3
HOH
HOH
433
A
HOH
434
3
HOH
HOH
434
A
HOH
435
3
HOH
HOH
435
A
HOH
436
3
HOH
HOH
436
A
HOH
437
3
HOH
HOH
437
A
HOH
438
3
HOH
HOH
438
A
HOH
439
3
HOH
HOH
439
A
HOH
440
3
HOH
HOH
440
A
HOH
441
3
HOH
HOH
441
A
HOH
442
3
HOH
HOH
442
A
HOH
443
3
HOH
HOH
443
A
HOH
444
3
HOH
HOH
444
A
HOH
445
3
HOH
HOH
445
A
HOH
446
3
HOH
HOH
446
A
HOH
447
3
HOH
HOH
447
A
HOH
448
3
HOH
HOH
448
A
HOH
449
3
HOH
HOH
449
A
HOH
450
3
HOH
HOH
450
A
HOH
451
3
HOH
HOH
451
A
HOH
452
3
HOH
HOH
452
A
HOH
453
3
HOH
HOH
453
A
HOH
454
3
HOH
HOH
454
A
HOH
455
3
HOH
HOH
455
A
HOH
456
3
HOH
HOH
456
A
HOH
457
3
HOH
HOH
457
A
HOH
458
3
HOH
HOH
458
A
HOH
459
3
HOH
HOH
459
A
HOH
460
3
HOH
HOH
460
A
HOH
461
3
HOH
HOH
461
A
HOH
462
3
HOH
HOH
462
A
HOH
463
3
HOH
HOH
463
A
HOH
464
3
HOH
HOH
464
A
HOH
465
3
HOH
HOH
465
A
HOH
466
3
HOH
HOH
466
A
HOH
467
3
HOH
HOH
467
A
HOH
468
3
HOH
HOH
468
A
HOH
469
3
HOH
HOH
469
A
HOH
470
3
HOH
HOH
470
A
HOH
471
3
HOH
HOH
471
A
HOH
472
3
HOH
HOH
472
A
HOH
473
3
HOH
HOH
473
A
HOH
474
3
HOH
HOH
474
A
HOH
475
3
HOH
HOH
475
A
HOH
476
3
HOH
HOH
476
A
HOH
477
3
HOH
HOH
477
A
HOH
478
3
HOH
HOH
478
A
HOH
479
3
HOH
HOH
479
A
HOH
480
3
HOH
HOH
480
A
HOH
481
3
HOH
HOH
481
A
HOH
482
3
HOH
HOH
482
A
HOH
483
3
HOH
HOH
483
A
HOH
484
3
HOH
HOH
484
A
HOH
485
3
HOH
HOH
485
A
HOH
486
3
HOH
HOH
486
A
HOH
487
3
HOH
HOH
487
A
HOH
488
3
HOH
HOH
488
A
HOH
489
3
HOH
HOH
489
A
HOH
490
3
HOH
HOH
490
A
HOH
491
3
HOH
HOH
491
A
HOH
492
3
HOH
HOH
492
A
HOH
493
3
HOH
HOH
493
A
HOH
494
3
HOH
HOH
494
A
HOH
495
3
HOH
HOH
495
A
HOH
496
3
HOH
HOH
496
A
HOH
497
3
HOH
HOH
497
A
HOH
498
3
HOH
HOH
498
A
HOH
499
3
HOH
HOH
499
A
HOH
500
3
HOH
HOH
500
A
HOH
501
3
HOH
HOH
501
A
HOH
502
3
HOH
HOH
502
A
HOH
503
3
HOH
HOH
503
A
HOH
504
3
HOH
HOH
504
A
HOH
505
3
HOH
HOH
505
A
HOH
506
3
HOH
HOH
506
A
HOH
507
3
HOH
HOH
507
A
HOH
508
3
HOH
HOH
508
A
HOH
509
3
HOH
HOH
509
A
LEU
1
n
1
LEU
1
A
PRO
2
n
2
PRO
2
A
SER
3
n
3
SER
3
A
PHE
4
n
4
PHE
4
A
VAL
5
n
5
VAL
5
A
ASP
6
n
6
ASP
6
A
TRP
7
n
7
TRP
7
A
ARG
8
n
8
ARG
8
A
SER
9
n
9
SER
9
A
LYS
10
n
10
LYS
10
A
GLY
11
n
11
GLY
11
A
ALA
12
n
12
ALA
12
A
VAL
13
n
13
VAL
13
A
ASN
14
n
14
ASN
14
A
SER
15
n
15
SER
15
A
ILE
16
n
16
ILE
16
A
LYS
17
n
17
LYS
17
A
ASN
18
n
18
ASN
18
A
GLN
19
n
19
GLN
19
A
LYS
20
n
20
LYS
20
A
GLN
21
n
21
GLN
21
A
CYS
22
n
22
CYS
22
A
GLY
23
n
23
GLY
23
A
SER
24
n
24
SER
24
A
CYS
25
n
25
CYS
25
A
TRP
26
n
26
TRP
26
A
ALA
27
n
27
ALA
27
A
PHE
28
n
28
PHE
28
A
SER
29
n
29
SER
29
A
ALA
30
n
30
ALA
30
A
VAL
31
n
31
VAL
31
A
ALA
32
n
32
ALA
32
A
ALA
33
n
33
ALA
33
A
VAL
34
n
34
VAL
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
ILE
37
n
37
ILE
37
A
ASN
38
n
38
ASN
38
A
LYS
39
n
39
LYS
39
A
ILE
40
n
40
ILE
40
A
ARG
41
n
41
ARG
41
A
THR
42
n
42
THR
42
A
GLY
43
n
43
GLY
43
A
GLN
44
n
44
GLN
44
A
LEU
45
n
45
LEU
45
A
ILE
46
n
46
ILE
46
A
SER
47
n
47
SER
47
A
LEU
48
n
48
LEU
48
A
SER
49
n
49
SER
49
A
GLU
50
n
50
GLU
50
A
GLN
51
n
51
GLN
51
A
GLU
52
n
52
GLU
52
A
LEU
53
n
53
LEU
53
A
VAL
54
n
54
VAL
54
A
ASP
55
n
55
ASP
55
A
CYS
56
n
56
CYS
56
A
ASP
57
n
57
ASP
57
A
THR
58
n
58
THR
58
A
ALA
59
n
59
ALA
59
A
SER
60
n
60
SER
60
A
HIS
61
n
61
HIS
61
A
GLY
62
n
62
GLY
62
A
CYS
63
n
63
CYS
63
A
ASN
64
n
64
ASN
64
A
GLY
65
n
65
GLY
65
A
GLY
66
n
66
GLY
66
A
TRP
67
n
67
TRP
67
A
MET
68
n
68
MET
68
A
ASN
69
n
69
ASN
69
A
ASN
70
n
70
ASN
70
A
ALA
71
n
71
ALA
71
A
PHE
72
n
72
PHE
72
A
GLN
73
n
73
GLN
73
A
TYR
74
n
74
TYR
74
A
ILE
75
n
75
ILE
75
A
ILE
76
n
76
ILE
76
A
THR
77
n
77
THR
77
A
ASN
78
n
78
ASN
78
A
GLY
79
n
79
GLY
79
A
GLY
80
n
80
GLY
80
A
ILE
81
n
81
ILE
81
A
ASP
82
n
82
ASP
82
A
THR
83
n
83
THR
83
A
GLN
84
n
84
GLN
84
A
GLN
85
n
85
GLN
85
A
ASN
86
n
86
ASN
86
A
TYR
87
n
87
TYR
87
A
PRO
88
n
88
PRO
88
A
TYR
89
n
89
TYR
89
A
SER
90
n
90
SER
90
A
ALA
91
n
91
ALA
91
A
VAL
92
n
92
VAL
92
A
GLN
93
n
93
GLN
93
A
GLY
94
n
94
GLY
94
A
SER
95
n
95
SER
95
A
CYS
96
n
96
CYS
96
A
LYS
97
n
97
LYS
97
A
PRO
98
n
98
PRO
98
A
TYR
99
n
99
TYR
99
A
ARG
100
n
100
ARG
100
A
LEU
101
n
101
LEU
101
A
ARG
102
n
102
ARG
102
A
VAL
103
n
103
VAL
103
A
VAL
104
n
104
VAL
104
A
SER
105
n
105
SER
105
A
ILE
106
n
106
ILE
106
A
ASN
107
n
107
ASN
107
A
GLY
108
n
108
GLY
108
A
PHE
109
n
109
PHE
109
A
GLN
110
n
110
GLN
110
A
ARG
111
n
111
ARG
111
A
VAL
112
n
112
VAL
112
A
THR
113
n
113
THR
113
A
ARG
114
n
114
ARG
114
A
ASN
115
n
115
ASN
115
A
ASN
116
n
116
ASN
116
A
GLU
117
n
117
GLU
117
A
SER
118
n
118
SER
118
A
ALA
119
n
119
ALA
119
A
LEU
120
n
120
LEU
120
A
GLN
121
n
121
GLN
121
A
SER
122
n
122
SER
122
A
ALA
123
n
123
ALA
123
A
VAL
124
n
124
VAL
124
A
ALA
125
n
125
ALA
125
A
SER
126
n
126
SER
126
A
GLN
127
n
127
GLN
127
A
PRO
128
n
128
PRO
128
A
VAL
129
n
129
VAL
129
A
SER
130
n
130
SER
130
A
VAL
131
n
131
VAL
131
A
THR
132
n
132
THR
132
A
VAL
133
n
133
VAL
133
A
GLU
134
n
134
GLU
134
A
ALA
135
n
135
ALA
135
A
ALA
136
n
136
ALA
136
A
GLY
137
n
137
GLY
137
A
ALA
138
n
138
ALA
138
A
PRO
139
n
139
PRO
139
A
PHE
140
n
140
PHE
140
A
GLN
141
n
141
GLN
141
A
HIS
142
n
142
HIS
142
A
TYR
143
n
143
TYR
143
A
SER
144
n
144
SER
144
A
SER
145
n
145
SER
145
A
GLY
146
n
146
GLY
146
A
ILE
147
n
147
ILE
147
A
PHE
148
n
148
PHE
148
A
THR
149
n
149
THR
149
A
GLY
150
n
150
GLY
150
A
PRO
151
n
151
PRO
151
A
CYS
152
n
152
CYS
152
A
GLY
153
n
153
GLY
153
A
THR
154
n
154
THR
154
A
ALA
155
n
155
ALA
155
A
GLN
156
n
156
GLN
156
A
ASN
157
n
157
ASN
157
A
HIS
158
n
158
HIS
158
A
GLY
159
n
159
GLY
159
A
VAL
160
n
160
VAL
160
A
VAL
161
n
161
VAL
161
A
ILE
162
n
162
ILE
162
A
VAL
163
n
163
VAL
163
A
GLY
164
n
164
GLY
164
A
TYR
165
n
165
TYR
165
A
GLY
166
n
166
GLY
166
A
THR
167
n
167
THR
167
A
GLN
168
n
168
GLN
168
A
SER
169
n
169
SER
169
A
GLY
170
n
170
GLY
170
A
LYS
171
n
171
LYS
171
A
ASN
172
n
172
ASN
172
A
TYR
173
n
173
TYR
173
A
TRP
174
n
174
TRP
174
A
ILE
175
n
175
ILE
175
A
VAL
176
n
176
VAL
176
A
ARG
177
n
177
ARG
177
A
ASN
178
n
178
ASN
178
A
SER
179
n
179
SER
179
A
TRP
180
n
180
TRP
180
A
GLY
181
n
181
GLY
181
A
GLN
182
n
182
GLN
182
A
ASN
183
n
183
ASN
183
A
TRP
184
n
184
TRP
184
A
GLY
185
n
185
GLY
185
A
ASN
186
n
186
ASN
186
A
GLN
187
n
187
GLN
187
A
GLY
188
n
188
GLY
188
A
TYR
189
n
189
TYR
189
A
ILE
190
n
190
ILE
190
A
TRP
191
n
191
TRP
191
A
MET
192
n
192
MET
192
A
GLU
193
n
193
GLU
193
A
ARG
194
n
194
ARG
194
A
ASN
195
n
195
ASN
195
A
VAL
196
n
196
VAL
196
A
ALA
197
n
197
ALA
197
A
SER
198
n
198
SER
198
A
SER
199
n
199
SER
199
A
ALA
200
n
200
ALA
200
A
GLY
201
n
201
GLY
201
A
LEU
202
n
202
LEU
202
A
CYS
203
n
203
CYS
203
A
GLY
204
n
204
GLY
204
A
ILE
205
n
205
ILE
205
A
ALA
206
n
206
ALA
206
A
GLN
207
n
207
GLN
207
A
LEU
208
n
208
LEU
208
A
PRO
209
n
209
PRO
209
A
SER
210
n
210
SER
210
A
TYR
211
n
211
TYR
211
A
PRO
212
n
212
PRO
212
A
THR
213
n
213
THR
213
A
LYS
214
n
214
LYS
214
A
ALA
215
n
215
ALA
215
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
148
A
N
PHE
148
A
O
TRP
191
A
O
TRP
191
A
O
ILE
190
A
O
ILE
190
A
N
VAL
176
A
N
VAL
176
A
O
ARG
177
A
O
ARG
177
A
N
VAL
161
A
N
VAL
161
A
O
TYR
165
A
O
TYR
165
A
N
VAL
5
A
N
VAL
5
A
N
PHE
148
A
N
PHE
148
A
O
TRP
191
A
O
TRP
191
A
O
ILE
190
A
O
ILE
190
A
N
VAL
176
A
N
VAL
176
A
O
ARG
177
A
O
ARG
177
A
N
VAL
161
A
N
VAL
161
A
O
ILE
162
A
O
ILE
162
A
N
VAL
129
A
N
VAL
129
A
N
GLY
108
A
N
GLY
108
A
O
THR
213
A
O
THR
213
1
A
LYS
20
57.20
-143.81
1
A
GLN
21
-86.07
48.39
PROTEIN_REP.PARAM
WATER_REP.PARAM
THJ.PARAM
PEPTIDE.PARAM
17.8
1.72
0.00
0.00
-1.07
0.00
-0.65
0.184
0.005
0.161
0.1626
0.161
1.63
14.94
1213
25194
24993
4.9
99.2
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB entry 2ACT
Engh & Huber
FLAT MODEL
47.353
0.356996
0.17
0.12
1.63
14.94
208
1845
5
0
1632
0.005
1.2
23.8
0.74
1.31
1.50
1.99
2.00
3.11
2.00
4.74
2.50
0.262
0.018
0.256
1.73
203
3749
3952
6
5.1
95.7
18.1
1.63
50
1IWD
25294
25048
-3.0
0.048
1
24.06
5.6
99.1
0.281
1.63
1.67
4.0
1
89.2
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
1.0
Proposed Amino Acid Sequence and the 1.63 Angstrom X-ray Crystal Structure of a Plant Cysteine Protease Ervatamin B: Insight into the Structural Basis of its Stability and Substrate Specificity.
1
N
N
2
N
N
3
N
N
A
ARG
8
A
ARG
8
HELX_P
A
GLY
11
A
GLY
11
5
1
4
A
SER
24
A
SER
24
HELX_P
A
GLY
43
A
GLY
43
1
2
20
A
SER
49
A
SER
49
HELX_P
A
ASP
57
A
ASP
57
1
3
9
A
HIS
61
A
HIS
61
HELX_P
A
GLY
65
A
GLY
65
5
4
5
A
TRP
67
A
TRP
67
HELX_P
A
GLY
79
A
GLY
79
1
5
13
A
ASN
116
A
ASN
116
HELX_P
A
GLN
127
A
GLN
127
1
6
12
A
GLY
137
A
GLY
137
HELX_P
A
HIS
142
A
HIS
142
1
7
6
A
GLY
201
A
GLY
201
HELX_P
A
ILE
205
A
ILE
205
5
8
5
disulf
2.032
A
CYS
22
A
SG
CYS
22
1_555
A
CYS
63
A
SG
CYS
63
1_555
disulf
2.026
A
CYS
56
A
SG
CYS
56
1_555
A
CYS
96
A
SG
CYS
96
1_555
disulf
2.036
A
CYS
152
A
SG
CYS
152
1_555
A
CYS
203
A
SG
CYS
203
1_555
covale
1.962
none
A
CYS
25
A
SG
CYS
25
1_555
A
THJ
601
B
S2
THJ
1_555
HYDROLASE
Cysteine protease, alpha-beta protein, catalytic dyad, L-domain, R-domain., HYDROLASE
A
GLY
150
A
GLY
150
1
A
PRO
151
A
PRO
151
0.27
ERVB_TABDI
UNP
1
1
P60994
LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGG
IDTQQNYPYSAVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGV
VIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTKA
1
215
1IWD
1
215
P60994
A
1
1
215
5
5
2
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
147
A
ILE
147
A
PHE
148
A
PHE
148
A
TYR
189
A
TYR
189
A
GLU
193
A
GLU
193
A
LYS
171
A
LYS
171
A
ARG
177
A
ARG
177
A
HIS
158
A
HIS
158
A
GLN
168
A
GLN
168
A
VAL
5
A
VAL
5
A
ASP
6
A
ASP
6
A
ILE
147
A
ILE
147
A
PHE
148
A
PHE
148
A
TYR
189
A
TYR
189
A
GLU
193
A
GLU
193
A
LYS
171
A
LYS
171
A
ARG
177
A
ARG
177
A
HIS
158
A
HIS
158
A
GLN
168
A
GLN
168
A
VAL
129
A
VAL
129
A
VAL
133
A
VAL
133
A
GLY
108
A
GLY
108
A
ARG
111
A
ARG
111
A
SER
210
A
SER
210
A
THR
213
A
THR
213
BINDING SITE FOR RESIDUE THJ A 601
A
THJ
601
Software
9
A
GLN
19
A
GLN
19
9
1_555
A
GLY
23
A
GLY
23
9
1_555
A
SER
24
A
SER
24
9
1_555
A
CYS
25
A
CYS
25
9
1_555
A
GLY
65
A
GLY
65
9
1_555
A
ASN
157
A
ASN
157
9
1_555
A
HIS
158
A
HIS
158
9
1_555
A
HOH
374
C
HOH
9
1_555
A
HOH
445
C
HOH
9
1_555
19
P 21 21 21