1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Saito, K.
Koshiba, S.
Kigawa, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
UK
STRUCTURE
STRUE6
2005
0969-2126
12
1719
1728
10.1016/j.str.2004.07.012
15341735
The CAP-Gly domain of CYLD associates with the proline-rich sequence in NEMO/IKKgamma
2004
10.2210/pdb1ixd/pdb
pdb_00001ixd
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
10871.257
Cylindromatosis tumour-suppressor CYLD
3.1.2.15
CAP-GLY domain
1
man
polymer
Probable ubiquitin carboxyl-terminal hydrolase CYLD, Ubiquitin thiolesterase CYLD, Ubiquitin-specific processing protease CYLD, Deubiquitinating enzyme CYLD, HSPC057
no
no
GSSGSSGLAMPPGNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKAL
FVKLKSCRPDSRFASLQPSGPSSG
GSSGSSGLAMPPGNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKAL
FVKLKSCRPDSRFASLQPSGPSSG
A
hsk001000012.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
Cell-free protein synthesis
fh04363
9606
Homo sapiens
PLASMID
P011213-03
RIKEN Structural Genomics/Proteomics Initiative
RSGI
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Data collection
1
0
2002-12-19
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
SHEET
determination method: author determined
THE STRAND OF TYR33-GLY40 CONTAINS BULGE STRUCTURE AT ARG37
Y
PDBJ
Y
PDBJ
2002-06-19
REL
structures with the lowest energy
200
20
3D_13C-separated_NOESY
3D_15N-separated_NOESY
120
6.0
ambient
298
K
simulated annealing
1
lowest energy
0.8mM CAP-GLY domain U-15N,13C; 20mM phosphate buffer Na; 100MM SODIUM CHLORIDE; 1MM DITHIOTHREITOL; 90% H2O, 10% D2O
90% H2O/10% D2O
Bruker
collection
XwinNMR
2.6
Deraglio, F.
processing
NMRPipe
2.1
Johnson, B.
data analysis
NMRView
5
Brunger, A.
refinement
CNS
1.1
600
Bruker
AVANCE
800
Bruker
AVANCE
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
MET
10
n
10
MET
10
A
PRO
11
n
11
PRO
11
A
PRO
12
n
12
PRO
12
A
GLY
13
n
13
GLY
13
A
ASN
14
n
14
ASN
14
A
SER
15
n
15
SER
15
A
HIS
16
n
16
HIS
16
A
GLY
17
n
17
GLY
17
A
LEU
18
n
18
LEU
18
A
GLU
19
n
19
GLU
19
A
VAL
20
n
20
VAL
20
A
GLY
21
n
21
GLY
21
A
SER
22
n
22
SER
22
A
LEU
23
n
23
LEU
23
A
ALA
24
n
24
ALA
24
A
GLU
25
n
25
GLU
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
GLU
28
n
28
GLU
28
A
ASN
29
n
29
ASN
29
A
PRO
30
n
30
PRO
30
A
PRO
31
n
31
PRO
31
A
PHE
32
n
32
PHE
32
A
TYR
33
n
33
TYR
33
A
GLY
34
n
34
GLY
34
A
VAL
35
n
35
VAL
35
A
ILE
36
n
36
ILE
36
A
ARG
37
n
37
ARG
37
A
TRP
38
n
38
TRP
38
A
ILE
39
n
39
ILE
39
A
GLY
40
n
40
GLY
40
A
GLN
41
n
41
GLN
41
A
PRO
42
n
42
PRO
42
A
PRO
43
n
43
PRO
43
A
GLY
44
n
44
GLY
44
A
LEU
45
n
45
LEU
45
A
ASN
46
n
46
ASN
46
A
GLU
47
n
47
GLU
47
A
VAL
48
n
48
VAL
48
A
LEU
49
n
49
LEU
49
A
ALA
50
n
50
ALA
50
A
GLY
51
n
51
GLY
51
A
LEU
52
n
52
LEU
52
A
GLU
53
n
53
GLU
53
A
LEU
54
n
54
LEU
54
A
GLU
55
n
55
GLU
55
A
ASP
56
n
56
ASP
56
A
GLU
57
n
57
GLU
57
A
CYS
58
n
58
CYS
58
A
ALA
59
n
59
ALA
59
A
GLY
60
n
60
GLY
60
A
CYS
61
n
61
CYS
61
A
THR
62
n
62
THR
62
A
ASP
63
n
63
ASP
63
A
GLY
64
n
64
GLY
64
A
THR
65
n
65
THR
65
A
PHE
66
n
66
PHE
66
A
ARG
67
n
67
ARG
67
A
GLY
68
n
68
GLY
68
A
THR
69
n
69
THR
69
A
ARG
70
n
70
ARG
70
A
TYR
71
n
71
TYR
71
A
PHE
72
n
72
PHE
72
A
THR
73
n
73
THR
73
A
CYS
74
n
74
CYS
74
A
ALA
75
n
75
ALA
75
A
LEU
76
n
76
LEU
76
A
LYS
77
n
77
LYS
77
A
LYS
78
n
78
LYS
78
A
ALA
79
n
79
ALA
79
A
LEU
80
n
80
LEU
80
A
PHE
81
n
81
PHE
81
A
VAL
82
n
82
VAL
82
A
LYS
83
n
83
LYS
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
SER
86
n
86
SER
86
A
CYS
87
n
87
CYS
87
A
ARG
88
n
88
ARG
88
A
PRO
89
n
89
PRO
89
A
ASP
90
n
90
ASP
90
A
SER
91
n
91
SER
91
A
ARG
92
n
92
ARG
92
A
PHE
93
n
93
PHE
93
A
ALA
94
n
94
ALA
94
A
SER
95
n
95
SER
95
A
LEU
96
n
96
LEU
96
A
GLN
97
n
97
GLN
97
A
PRO
98
n
98
PRO
98
A
SER
99
n
99
SER
99
A
GLY
100
n
100
GLY
100
A
PRO
101
n
101
PRO
101
A
SER
102
n
102
SER
102
A
SER
103
n
103
SER
103
A
GLY
104
n
104
GLY
104
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
80
A
O
LEU
80
A
N
LEU
52
A
N
LEU
52
A
O
LEU
49
A
O
LEU
49
A
N
GLY
40
A
N
GLY
40
A
O
GLY
34
A
O
GLY
34
A
N
ALA
24
A
N
ALA
24
A
N
GLU
25
A
N
GLU
25
A
O
ARG
88
A
O
ARG
88
A
N
PHE
66
A
N
PHE
66
A
O
THR
69
A
O
THR
69
1
A
SER
15
-176.99
-43.18
1
A
HIS
16
-165.65
-58.09
1
A
ARG
37
-128.93
-64.14
1
A
ASP
63
-98.88
31.23
1
A
LYS
78
-149.17
37.66
1
A
SER
91
-98.68
30.67
1
A
GLN
97
60.56
87.65
2
A
SER
5
-169.05
89.55
2
A
ASN
14
62.97
-79.81
2
A
SER
15
-142.14
-47.21
2
A
LYS
27
-94.98
48.20
2
A
PRO
31
-68.28
83.28
2
A
ARG
37
-120.82
-63.36
2
A
VAL
48
-65.68
99.82
2
A
LYS
78
-150.58
40.03
2
A
SER
86
-97.52
34.42
2
A
SER
91
-98.66
30.92
2
A
LEU
96
-171.52
99.10
2
A
GLN
97
60.58
162.70
2
A
SER
99
-134.54
-54.00
2
A
SER
103
67.66
-71.14
3
A
ALA
9
-168.25
33.21
3
A
MET
10
-177.87
72.13
3
A
HIS
16
-158.36
-51.48
3
A
PRO
31
-68.86
90.55
3
A
ARG
37
-130.61
-66.18
3
A
GLU
57
-65.57
99.65
3
A
LYS
78
-149.10
40.52
3
A
SER
86
-99.87
31.63
3
A
SER
91
-98.70
30.66
3
A
SER
99
59.43
-168.86
3
A
SER
102
-164.41
-66.64
4
A
LEU
8
59.96
82.90
4
A
MET
10
-169.83
64.72
4
A
ASN
14
60.17
-177.19
4
A
HIS
16
-130.49
-72.19
4
A
PRO
31
-69.28
91.31
4
A
VAL
48
-64.46
97.65
4
A
ALA
75
-59.77
177.80
4
A
LYS
78
-147.14
36.02
4
A
SER
86
-97.23
31.19
4
A
LEU
96
60.64
97.60
4
A
GLN
97
-149.97
54.27
4
A
PRO
98
-71.78
-168.54
4
A
SER
102
61.02
156.35
5
A
SER
2
60.79
77.72
5
A
SER
3
60.41
-177.05
5
A
SER
5
60.74
-177.90
5
A
ALA
9
-149.81
29.30
5
A
MET
10
-164.59
81.33
5
A
SER
15
-135.46
-47.11
5
A
HIS
16
-153.58
-47.06
5
A
PRO
31
-69.62
87.14
5
A
ALA
75
-64.87
-178.69
5
A
LYS
78
-148.60
36.12
5
A
SER
86
-99.71
31.90
5
A
SER
91
-98.66
33.51
5
A
SER
102
-90.96
-63.09
6
A
SER
2
-140.31
-48.79
6
A
LEU
8
-96.60
-78.03
6
A
ALA
9
-170.53
73.10
6
A
MET
10
-176.17
64.91
6
A
ASN
14
-58.28
-171.54
6
A
SER
15
-72.24
-70.78
6
A
LEU
18
-68.16
98.18
6
A
LYS
78
-153.76
38.10
6
A
PRO
101
-52.22
106.05
6
A
SER
103
-169.05
113.48
7
A
SER
2
-107.24
-63.43
7
A
MET
10
-157.65
87.65
7
A
SER
15
64.50
-78.85
7
A
HIS
16
-133.67
-58.65
7
A
PRO
31
-68.94
85.38
7
A
ARG
37
-135.44
-67.55
7
A
GLU
57
-68.88
96.39
7
A
LYS
78
-147.61
38.30
7
A
LEU
96
-151.84
-46.44
7
A
SER
103
-155.12
-59.58
8
A
SER
5
60.59
168.25
8
A
ALA
9
-161.79
36.69
8
A
MET
10
-164.07
65.79
8
A
SER
15
64.29
-78.76
8
A
LYS
27
-98.05
37.04
8
A
PRO
31
-68.70
86.91
8
A
ARG
37
-121.76
-60.91
8
A
VAL
48
-63.71
98.72
8
A
ASP
63
-98.56
31.55
8
A
LYS
78
-147.18
36.86
8
A
SER
91
-98.73
30.42
8
A
SER
102
-176.26
-49.74
9
A
SER
5
69.73
-64.70
9
A
SER
6
67.82
92.38
9
A
SER
15
-175.18
-41.03
9
A
HIS
16
-156.66
-48.18
9
A
GLU
28
-127.24
-168.77
9
A
ARG
37
-121.67
-64.81
9
A
VAL
48
-63.16
99.81
9
A
GLU
57
-60.14
95.54
9
A
LYS
78
-148.69
38.07
9
A
SER
91
-98.70
30.72
9
A
PRO
98
-52.17
-177.58
9
A
SER
99
-108.32
-64.60
9
A
SER
102
60.75
74.50
10
A
SER
5
-155.63
-48.55
10
A
ALA
9
-147.44
45.64
10
A
SER
15
64.39
-78.89
10
A
ARG
37
-121.97
-66.56
10
A
VAL
48
-64.39
99.53
10
A
LYS
78
-143.60
40.31
10
A
SER
91
-98.75
30.25
10
A
SER
99
59.72
175.44
11
A
SER
3
-142.62
31.27
11
A
SER
5
-66.36
-174.19
11
A
MET
10
-168.80
67.31
11
A
ASN
14
60.55
-178.86
11
A
HIS
16
-126.79
-66.48
11
A
PRO
31
-69.96
87.44
11
A
ARG
37
-130.36
-64.97
11
A
GLU
57
-61.13
93.79
11
A
ASP
63
-98.33
34.03
11
A
LYS
78
-147.88
38.41
11
A
SER
91
-98.68
32.40
11
A
LEU
96
-103.52
-63.00
11
A
GLN
97
60.66
78.28
11
A
PRO
98
-52.38
107.36
11
A
SER
99
-142.42
-50.24
11
A
SER
103
-128.38
-51.93
12
A
SER
3
60.51
162.81
12
A
SER
5
60.67
86.66
12
A
SER
6
-146.00
-54.86
12
A
ALA
9
-159.49
80.17
12
A
MET
10
59.15
75.21
12
A
SER
15
-175.85
-58.38
12
A
HIS
16
-130.84
-46.05
12
A
PRO
31
-59.08
89.25
12
A
ARG
37
-124.33
-59.63
12
A
LYS
78
-148.72
41.16
13
A
MET
10
-173.49
68.27
13
A
ASN
14
60.34
179.99
13
A
LYS
27
-97.16
39.38
13
A
PRO
31
-68.35
94.87
13
A
ARG
37
-124.53
-60.00
13
A
LYS
78
-149.04
37.78
13
A
LEU
96
-98.76
31.73
13
A
GLN
97
-161.37
53.84
13
A
SER
99
-176.46
110.25
14
A
SER
2
-130.05
-62.98
14
A
SER
5
-176.35
-40.35
14
A
ASN
14
-90.88
-66.58
14
A
SER
15
-172.21
-42.00
14
A
HIS
16
-152.44
30.20
14
A
ARG
37
-126.13
-65.67
14
A
VAL
48
-63.48
99.60
14
A
LYS
78
-151.32
39.49
14
A
LEU
96
-97.50
38.59
15
A
SER
2
-154.86
81.57
15
A
ASN
14
-132.00
-68.02
15
A
SER
15
-165.95
-75.12
15
A
HIS
16
-105.28
-74.76
15
A
LYS
27
-97.39
37.88
15
A
PRO
31
-68.56
81.69
15
A
ARG
37
-121.61
-59.67
15
A
LYS
78
-151.68
39.56
15
A
PRO
98
-52.30
179.21
16
A
SER
2
60.90
158.26
16
A
ALA
9
-163.20
30.73
16
A
MET
10
-170.57
65.98
16
A
HIS
16
67.05
-70.68
16
A
PRO
31
-60.60
87.46
16
A
ARG
37
-125.31
-61.49
16
A
VAL
48
-64.04
99.79
16
A
LYS
78
-147.37
39.28
16
A
LEU
96
-161.53
-67.60
16
A
SER
99
59.91
165.89
16
A
SER
102
61.53
113.02
17
A
SER
5
-99.02
31.66
17
A
ALA
9
-112.13
75.06
17
A
HIS
16
-129.82
-74.60
17
A
LYS
27
-93.59
46.19
17
A
ALA
75
-62.70
-177.76
17
A
LYS
78
-144.36
38.40
17
A
SER
86
-97.59
32.55
17
A
SER
91
-99.01
31.28
17
A
GLN
97
179.95
-61.26
17
A
SER
103
-149.26
34.88
18
A
SER
3
-164.54
86.50
18
A
SER
6
-151.48
-48.74
18
A
ASN
14
60.93
-178.21
18
A
HIS
16
-129.53
-50.94
18
A
GLU
28
-170.02
-174.32
18
A
PRO
31
-68.59
95.26
18
A
ARG
37
-120.47
-63.02
18
A
LYS
78
-148.11
40.35
18
A
LEU
96
-159.38
88.75
18
A
GLN
97
59.96
98.54
18
A
PRO
98
-72.92
-168.26
18
A
SER
99
60.83
165.12
18
A
SER
102
-142.49
31.66
18
A
SER
103
-176.61
102.82
19
A
SER
2
62.29
117.69
19
A
SER
3
61.14
95.54
19
A
SER
6
60.30
168.78
19
A
ALA
9
62.48
120.05
19
A
ASN
14
63.72
-79.16
19
A
SER
15
-171.27
-50.74
19
A
HIS
16
-139.76
-50.11
19
A
PRO
31
-64.35
91.41
19
A
ALA
75
-67.12
-178.42
19
A
LYS
78
-147.14
41.14
19
A
LEU
96
60.03
85.58
19
A
SER
99
-176.73
38.17
19
A
PRO
101
-68.97
89.45
20
A
LEU
8
-101.44
-79.69
20
A
ALA
9
-140.16
55.72
20
A
SER
15
-170.36
-51.40
20
A
HIS
16
-161.62
-45.78
20
A
LYS
27
-100.83
75.59
20
A
GLU
28
-120.32
-169.83
20
A
PRO
31
-60.86
96.84
20
A
ARG
37
-126.38
-63.60
20
A
ALA
75
-59.96
179.08
20
A
LYS
78
-147.06
38.07
20
A
SER
91
-88.29
-75.55
20
A
ARG
92
52.32
-84.80
20
A
SER
99
63.09
-79.66
20
A
SER
102
-176.57
-58.60
20
A
SER
103
-109.16
-69.47
Solution structure of the CAP-GLY domain from human cylindromatosis tomour-suppressor CYLD
1
N
N
ANTITUMOR PROTEIN
Structural genomics, Tumour suppressor, RIKEN Structural Genomics/Proteomics Initiative, RSGI, ANTITUMOR PROTEIN
CYLD_HUMAN
UNP
1
460
Q9NQC7
LAMPPGNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSC
RPDSRFASLQP
460
550
1IXD
8
98
Q9NQC7
A
1
8
98
1
cloning artifact
GLY
1
1IXD
A
Q9NQC7
UNP
1
1
cloning artifact
SER
2
1IXD
A
Q9NQC7
UNP
2
1
cloning artifact
SER
3
1IXD
A
Q9NQC7
UNP
3
1
cloning artifact
GLY
4
1IXD
A
Q9NQC7
UNP
4
1
cloning artifact
SER
5
1IXD
A
Q9NQC7
UNP
5
1
cloning artifact
SER
6
1IXD
A
Q9NQC7
UNP
6
1
cloning artifact
GLY
7
1IXD
A
Q9NQC7
UNP
7
1
cloning artifact
SER
99
1IXD
A
Q9NQC7
UNP
99
1
cloning artifact
GLY
100
1IXD
A
Q9NQC7
UNP
100
1
cloning artifact
PRO
101
1IXD
A
Q9NQC7
UNP
101
1
cloning artifact
SER
102
1IXD
A
Q9NQC7
UNP
102
1
cloning artifact
SER
103
1IXD
A
Q9NQC7
UNP
103
1
cloning artifact
GLY
104
1IXD
A
Q9NQC7
UNP
104
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
80
A
LEU
80
A
LYS
83
A
LYS
83
A
LEU
49
A
LEU
49
A
GLU
53
A
GLU
53
A
TYR
33
A
TYR
33
A
GLY
40
A
GLY
40
A
LEU
23
A
LEU
23
A
GLU
25
A
GLU
25
A
CYS
87
A
CYS
87
A
PRO
89
A
PRO
89
A
THR
65
A
THR
65
A
PHE
66
A
PHE
66
A
THR
69
A
THR
69
A
ARG
70
A
ARG
70