0.00
8.751
6.419
-6.760
A
N
PHE
1
ATOM
A
N
PHE
1
1
1.00
1
N
0.00
10.189
6.688
-6.941
A
CA
PHE
1
ATOM
A
CA
PHE
1
1
1.00
1
C
0.00
10.900
6.757
-5.589
A
C
PHE
1
ATOM
A
C
PHE
1
1
1.00
1
C
0.00
10.338
7.258
-4.616
A
O
PHE
1
ATOM
A
O
PHE
1
1
1.00
1
O
0.00
10.405
7.999
-7.708
A
CB
PHE
1
ATOM
A
CB
PHE
1
1
1.00
1
C
0.00
9.658
8.085
-9.026
A
CG
PHE
1
ATOM
A
CG
PHE
1
1
1.00
1
C
0.00
10.135
7.383
-10.149
A
CD1
PHE
1
ATOM
A
CD1
PHE
1
1
1.00
1
C
0.00
8.472
8.837
-9.124
A
CD2
PHE
1
ATOM
A
CD2
PHE
1
1
1.00
1
C
0.00
9.434
7.439
-11.366
A
CE1
PHE
1
ATOM
A
CE1
PHE
1
1
1.00
1
C
0.00
7.771
8.893
-10.341
A
CE2
PHE
1
ATOM
A
CE2
PHE
1
1
1.00
1
C
0.00
8.252
8.195
-11.462
A
CZ
PHE
1
ATOM
A
CZ
PHE
1
1
1.00
1
C
0.00
8.631
5.549
-6.262
A
H1
PHE
1
ATOM
A
H1
PHE
1
1
1.00
1
H
0.00
8.335
7.170
-6.228
A
H2
PHE
1
ATOM
A
H2
PHE
1
1
1.00
1
H
0.00
8.301
6.356
-7.662
A
H3
PHE
1
ATOM
A
H3
PHE
1
1
1.00
1
H
0.00
10.608
5.864
-7.521
A
HA
PHE
1
ATOM
A
HA
PHE
1
1
1.00
1
H
0.00
10.103
8.819
-7.059
A
HB2
PHE
1
ATOM
A
HB2
PHE
1
1
1.00
1
H
0.00
11.466
8.134
-7.920
A
HB3
PHE
1
ATOM
A
HB3
PHE
1
1
1.00
1
H
0.00
11.039
6.796
-10.078
A
HD1
PHE
1
ATOM
A
HD1
PHE
1
1
1.00
1
H
0.00
8.092
9.370
-8.264
A
HD2
PHE
1
ATOM
A
HD2
PHE
1
1
1.00
1
H
0.00
9.802
6.901
-12.227
A
HE1
PHE
1
ATOM
A
HE1
PHE
1
1
1.00
1
H
0.00
6.862
9.471
-10.414
A
HE2
PHE
1
ATOM
A
HE2
PHE
1
1
1.00
1
H
0.00
7.713
8.238
-12.398
A
HZ
PHE
1
ATOM
A
HZ
PHE
1
1
1.00
1
H
0.00
12.142
6.260
-5.538
A
N
ALA
2
ATOM
A
N
ALA
1
2
1.00
1
N
0.00
12.967
6.268
-4.339
A
CA
ALA
2
ATOM
A
CA
ALA
1
2
1.00
1
C
0.00
13.402
7.697
-4.007
A
C
ALA
2
ATOM
A
C
ALA
1
2
1.00
1
C
0.00
13.696
8.485
-4.905
A
O
ALA
2
ATOM
A
O
ALA
1
2
1.00
1
O
0.00
14.194
5.377
-4.563
A
CB
ALA
2
ATOM
A
CB
ALA
1
2
1.00
1
C
0.00
12.537
5.862
-6.377
A
H
ALA
2
ATOM
A
H
ALA
1
2
1.00
1
H
0.00
12.381
5.867
-3.508
A
HA
ALA
2
ATOM
A
HA
ALA
1
2
1.00
1
H
0.00
13.878
4.357
-4.788
A
HB1
ALA
2
ATOM
A
HB1
ALA
1
2
1.00
1
H
0.00
14.788
5.756
-5.397
A
HB2
ALA
2
ATOM
A
HB2
ALA
1
2
1.00
1
H
0.00
14.814
5.365
-3.666
A
HB3
ALA
2
ATOM
A
HB3
ALA
1
2
1.00
1
H
0.00
13.442
8.020
-2.709
A
N
THR
3
ATOM
A
N
THR
1
3
1.00
1
N
0.00
13.848
9.325
-2.207
A
CA
THR
3
ATOM
A
CA
THR
1
3
1.00
1
C
0.00
15.367
9.483
-2.291
A
C
THR
3
ATOM
A
C
THR
1
3
1.00
1
C
0.00
16.106
8.498
-2.269
A
O
THR
3
ATOM
A
O
THR
1
3
1.00
1
O
0.00
13.343
9.502
-0.760
A
CB
THR
3
ATOM
A
CB
THR
1
3
1.00
1
C
0.00
13.472
8.299
-0.007
A
OG1
THR
3
ATOM
A
OG1
THR
1
3
1.00
1
O
0.00
11.852
9.856
-0.789
A
CG2
THR
3
ATOM
A
CG2
THR
1
3
1.00
1
C
0.00
13.200
7.320
-2.021
A
H
THR
3
ATOM
A
H
THR
1
3
1.00
1
H
0.00
13.402
10.101
-2.832
A
HA
THR
3
ATOM
A
HA
THR
1
3
1.00
1
H
0.00
13.850
10.347
-0.283
A
HB
THR
3
ATOM
A
HB
THR
1
3
1.00
1
H
0.00
11.283
9.061
-1.273
A
HG21
THR
3
ATOM
A
HG21
THR
1
3
1.00
1
H
0.00
11.489
9.981
0.232
A
HG22
THR
3
ATOM
A
HG22
THR
1
3
1.00
1
H
0.00
11.700
10.789
-1.332
A
HG23
THR
3
ATOM
A
HG23
THR
1
3
1.00
1
H
0.00
15.814
10.743
-2.368
A
N
MET
4
ATOM
A
N
MET
1
4
1.00
1
N
0.00
17.212
11.144
-2.265
A
CA
MET
4
ATOM
A
CA
MET
1
4
1.00
1
C
0.00
17.353
12.062
-1.044
A
C
MET
4
ATOM
A
C
MET
1
4
1.00
1
C
0.00
17.947
13.136
-1.120
A
O
MET
4
ATOM
A
O
MET
1
4
1.00
1
O
0.00
17.637
11.820
-3.579
A
CB
MET
4
ATOM
A
CB
MET
1
4
1.00
1
C
0.00
19.160
11.833
-3.749
A
CG
MET
4
ATOM
A
CG
MET
1
4
1.00
1
C
0.00
19.717
12.610
-5.289
A
SD
MET
4
ATOM
A
SD
MET
1
4
1.00
1
S
0.00
21.508
12.414
-5.092
A
CE
MET
4
ATOM
A
CE
MET
1
4
1.00
1
C
0.00
15.128
11.482
-2.412
A
H
MET
4
ATOM
A
H
MET
1
4
1.00
1
H
0.00
17.845
10.270
-2.110
A
HA
MET
4
ATOM
A
HA
MET
1
4
1.00
1
H
0.00
17.209
11.254
-4.407
A
HB2
MET
4
ATOM
A
HB2
MET
1
4
1.00
1
H
0.00
17.258
12.842
-3.633
A
HB3
MET
4
ATOM
A
HB3
MET
1
4
1.00
1
H
0.00
19.618
12.367
-2.917
A
HG2
MET
4
ATOM
A
HG2
MET
1
4
1.00
1
H
0.00
19.523
10.805
-3.738
A
HG3
MET
4
ATOM
A
HG3
MET
1
4
1.00
1
H
0.00
22.015
12.840
-5.958
A
HE1
MET
4
ATOM
A
HE1
MET
1
4
1.00
1
H
0.00
21.755
11.356
-5.014
A
HE2
MET
4
ATOM
A
HE2
MET
1
4
1.00
1
H
0.00
21.837
12.932
-4.191
A
HE3
MET
4
ATOM
A
HE3
MET
1
4
1.00
1
H
0.00
16.777
11.632
0.087
A
N
ARG
5
ATOM
A
N
ARG
1
5
1.00
1
N
0.00
16.725
12.378
1.330
A
CA
ARG
5
ATOM
A
CA
ARG
1
5
1.00
1
C
0.00
18.038
12.219
2.109
A
C
ARG
5
ATOM
A
C
ARG
1
5
1.00
1
C
0.00
18.920
11.453
1.720
A
O
ARG
5
ATOM
A
O
ARG
1
5
1.00
1
O
0.00
15.533
11.872
2.129
A
CB
ARG
5
ATOM
A
CB
ARG
1
5
1.00
1
C
0.00
14.783
12.932
2.950
A
CG
ARG
5
ATOM
A
CG
ARG
1
5
1.00
1
C
0.00
14.063
12.261
4.119
A
CD
ARG
5
ATOM
A
CD
ARG
1
5
1.00
1
C
0.00
15.042
11.817
5.116
A
NE
ARG
5
ATOM
A
NE
ARG
1
5
1.00
1
N
0.00
14.855
10.870
6.049
A
CZ
ARG
5
ATOM
A
CZ
ARG
1
5
1.00
1
C
0.00
13.694
10.205
6.150
A
NH1
ARG
5
ATOM
A
NH1
ARG
1
5
1.00
1
N
0.00
15.854
10.590
6.896
A
NH2
ARG
5
ATOM
A
NH2
ARG
1
5
1.00
1
N
0.00
16.297
10.744
0.096
A
H
ARG
5
ATOM
A
H
ARG
1
5
1.00
1
H
0.00
16.539
13.425
1.159
A
HA
ARG
5
ATOM
A
HA
ARG
1
5
1.00
1
H
0.00
14.782
11.412
1.503
A
HB2
ARG
5
ATOM
A
HB2
ARG
1
5
1.00
1
H
0.00
15.964
11.088
2.715
A
HB3
ARG
5
ATOM
A
HB3
ARG
1
5
1.00
1
H
0.00
15.452
13.696
3.339
A
HG2
ARG
5
ATOM
A
HG2
ARG
1
5
1.00
1
H
0.00
14.046
13.416
2.306
A
HG3
ARG
5
ATOM
A
HG3
ARG
1
5
1.00
1
H
0.00
13.393
12.982
4.588
A
HD2
ARG
5
ATOM
A
HD2
ARG
1
5
1.00
1
H
0.00
13.477
11.421
3.744
A
HD3
ARG
5
ATOM
A
HD3
ARG
1
5
1.00
1
H
0.00
15.936
12.282
5.075
A
HE
ARG
5
ATOM
A
HE
ARG
1
5
1.00
1
H
0.00
12.933
10.412
5.520
A
HH11
ARG
5
ATOM
A
HH11
ARG
1
5
1.00
1
H
0.00
13.582
9.492
6.856
A
HH12
ARG
5
ATOM
A
HH12
ARG
1
5
1.00
1
H
0.00
16.729
11.091
6.819
A
HH21
ARG
5
ATOM
A
HH21
ARG
1
5
1.00
1
H
0.00
15.744
9.876
7.603
A
HH22
ARG
5
ATOM
A
HH22
ARG
1
5
1.00
1
H
0.00
18.145
12.957
3.217
A
N
TYR
6
ATOM
A
N
TYR
1
6
1.00
1
N
0.00
19.303
13.033
4.091
A
CA
TYR
6
ATOM
A
CA
TYR
1
6
1.00
1
C
0.00
19.014
12.306
5.411
A
C
TYR
6
ATOM
A
C
TYR
1
6
1.00
1
C
0.00
17.962
12.548
6.002
A
O
TYR
6
ATOM
A
O
TYR
1
6
1.00
1
O
0.00
19.592
14.508
4.373
A
CB
TYR
6
ATOM
A
CB
TYR
1
6
1.00
1
C
0.00
20.772
14.738
5.299
A
CG
TYR
6
ATOM
A
CG
TYR
1
6
1.00
1
C
0.00
22.085
14.676
4.798
A
CD1
TYR
6
ATOM
A
CD1
TYR
1
6
1.00
1
C
0.00
20.559
14.919
6.680
A
CD2
TYR
6
ATOM
A
CD2
TYR
1
6
1.00
1
C
0.00
23.179
14.801
5.672
A
CE1
TYR
6
ATOM
A
CE1
TYR
1
6
1.00
1
C
0.00
21.653
15.042
7.553
A
CE2
TYR
6
ATOM
A
CE2
TYR
1
6
1.00
1
C
0.00
22.964
14.980
7.050
A
CZ
TYR
6
ATOM
A
CZ
TYR
1
6
1.00
1
C
0.00
24.029
15.094
7.896
A
OH
TYR
6
ATOM
A
OH
TYR
1
6
1.00
1
O
0.00
17.372
13.556
3.446
A
H
TYR
6
ATOM
A
H
TYR
1
6
1.00
1
H
0.00
20.169
12.625
3.578
A
HA
TYR
6
ATOM
A
HA
TYR
1
6
1.00
1
H
0.00
19.765
15.005
3.419
A
HB2
TYR
6
ATOM
A
HB2
TYR
1
6
1.00
1
H
0.00
18.704
14.960
4.816
A
HB3
TYR
6
ATOM
A
HB3
TYR
1
6
1.00
1
H
0.00
22.257
14.519
3.743
A
HD1
TYR
6
ATOM
A
HD1
TYR
1
6
1.00
1
H
0.00
19.555
14.951
7.076
A
HD2
TYR
6
ATOM
A
HD2
TYR
1
6
1.00
1
H
0.00
24.187
14.756
5.286
A
HE1
TYR
6
ATOM
A
HE1
TYR
1
6
1.00
1
H
0.00
21.484
15.182
8.612
A
HE2
TYR
6
ATOM
A
HE2
TYR
1
6
1.00
1
H
0.00
23.774
15.213
8.814
A
HH
TYR
6
ATOM
A
HH
TYR
1
6
1.00
1
H
0.00
19.932
11.462
5.918
A
N
PRO
7
ATOM
A
N
PRO
1
7
1.00
1
N
0.00
21.128
10.957
5.245
A
CA
PRO
7
ATOM
A
CA
PRO
1
7
1.00
1
C
0.00
20.769
10.048
4.069
A
C
PRO
7
ATOM
A
C
PRO
1
7
1.00
1
C
0.00
21.412
10.065
3.022
A
O
PRO
7
ATOM
A
O
PRO
1
7
1.00
1
O
0.00
21.900
10.180
6.313
A
CB
PRO
7
ATOM
A
CB
PRO
1
7
1.00
1
C
0.00
20.833
9.754
7.319
A
CG
PRO
7
ATOM
A
CG
PRO
1
7
1.00
1
C
0.00
19.799
10.873
7.243
A
CD
PRO
7
ATOM
A
CD
PRO
1
7
1.00
1
C
0.00
21.746
11.766
4.880
A
HA
PRO
7
ATOM
A
HA
PRO
1
7
1.00
1
H
0.00
22.402
9.311
5.891
A
HB2
PRO
7
ATOM
A
HB2
PRO
1
7
1.00
1
H
0.00
22.616
10.843
6.801
A
HB3
PRO
7
ATOM
A
HB3
PRO
1
7
1.00
1
H
0.00
20.379
8.817
6.995
A
HG2
PRO
7
ATOM
A
HG2
PRO
1
7
1.00
1
H
0.00
21.243
9.645
8.324
A
HG3
PRO
7
ATOM
A
HG3
PRO
1
7
1.00
1
H
0.00
18.804
10.460
7.420
A
HD2
PRO
7
ATOM
A
HD2
PRO
1
7
1.00
1
H
0.00
20.027
11.634
7.991
A
HD3
PRO
7
ATOM
A
HD3
PRO
1
7
1.00
1
H
0.00
19.715
9.270
4.289
A
N
SER
8
ATOM
A
N
SER
1
8
1.00
1
N
0.00
19.052
8.374
3.354
A
CA
SER
8
ATOM
A
CA
SER
1
8
1.00
1
C
0.00
17.570
8.359
3.752
A
C
SER
8
ATOM
A
C
SER
1
8
1.00
1
C
0.00
17.210
8.889
4.804
A
O
SER
8
ATOM
A
O
SER
1
8
1.00
1
O
0.00
19.699
6.986
3.470
A
CB
SER
8
ATOM
A
CB
SER
1
8
1.00
1
C
0.00
19.438
6.607
4.807
A
OG
SER
8
ATOM
A
OG
SER
1
8
1.00
1
O
0.00
19.267
9.431
5.178
A
H
SER
8
ATOM
A
H
SER
1
8
1.00
1
H
0.00
19.145
8.773
2.342
A
HA
SER
8
ATOM
A
HA
SER
1
8
1.00
1
H
0.00
19.243
6.238
2.819
A
HB2
SER
8
ATOM
A
HB2
SER
1
8
1.00
1
H
0.00
20.777
7.060
3.310
A
HB3
SER
8
ATOM
A
HB3
SER
1
8
1.00
1
H
0.00
16.701
7.761
2.930
A
N
ASP
9
ATOM
A
N
ASP
1
9
1.00
1
N
0.00
15.267
7.768
3.178
A
CA
ASP
9
ATOM
A
CA
ASP
1
9
1.00
1
C
0.00
14.879
6.965
4.421
A
C
ASP
9
ATOM
A
C
ASP
1
9
1.00
1
C
0.00
13.870
7.279
5.050
A
O
ASP
9
ATOM
A
O
ASP
1
9
1.00
1
O
0.00
14.531
7.257
1.933
A
CB
ASP
9
ATOM
A
CB
ASP
1
9
1.00
1
C
0.00
14.605
8.244
0.765
A
CG
ASP
9
ATOM
A
CG
ASP
1
9
1.00
1
C
0.00
15.630
8.905
0.599
A
OD1
ASP
9
ATOM
A
OD1
ASP
1
9
1.00
1
O
0.00
17.007
7.365
2.054
A
H
ASP
9
ATOM
A
H
ASP
1
9
1.00
1
H
0.00
14.963
8.786
3.380
A
HA
ASP
9
ATOM
A
HA
ASP
1
9
1.00
1
H
0.00
14.944
6.296
1.624
A
HB2
ASP
9
ATOM
A
HB2
ASP
1
9
1.00
1
H
0.00
13.480
7.115
2.189
A
HB3
ASP
9
ATOM
A
HB3
ASP
1
9
1.00
1
H
0.00
15.666
5.940
4.768
A
N
SER
10
ATOM
A
N
SER
1
10
1.00
1
N
0.00
15.347
5.027
5.866
A
CA
SER
10
ATOM
A
CA
SER
1
10
1.00
1
C
0.00
16.578
4.471
6.599
A
C
SER
10
ATOM
A
C
SER
1
10
1.00
1
C
0.00
16.477
3.411
7.215
A
O
SER
10
ATOM
A
O
SER
1
10
1.00
1
O
0.00
14.484
3.878
5.317
A
CB
SER
10
ATOM
A
CB
SER
1
10
1.00
1
C
0.00
13.315
4.365
4.694
A
OG
SER
10
ATOM
A
OG
SER
1
10
1.00
1
O
0.00
16.468
5.773
4.183
A
H
SER
10
ATOM
A
H
SER
1
10
1.00
1
H
0.00
14.779
5.564
6.625
A
HA
SER
10
ATOM
A
HA
SER
1
10
1.00
1
H
0.00
15.057
3.301
4.590
A
HB2
SER
10
ATOM
A
HB2
SER
1
10
1.00
1
H
0.00
14.176
3.220
6.131
A
HB3
SER
10
ATOM
A
HB3
SER
1
10
1.00
1
H
0.00
12.840
4.914
5.323
A
HG
SER
10
ATOM
A
HG
SER
1
10
1.00
1
H
0.00
17.718
5.178
6.598
A
N
ASP
11
ATOM
A
N
ASP
1
11
1.00
1
N
0.00
18.884
4.822
7.390
A
CA
ASP
11
ATOM
A
CA
ASP
1
11
1.00
1
C
0.00
18.723
5.386
8.807
A
C
ASP
11
ATOM
A
C
ASP
1
11
1.00
1
C
0.00
18.608
4.619
9.762
A
O
ASP
11
ATOM
A
O
ASP
1
11
1.00
1
O
0.00
20.161
5.348
6.719
A
CB
ASP
11
ATOM
A
CB
ASP
1
11
1.00
1
C
0.00
20.094
5.478
5.204
A
CG
ASP
11
ATOM
A
CG
ASP
1
11
1.00
1
C
0.00
20.611
4.626
4.482
A
OD1
ASP
11
ATOM
A
OD1
ASP
1
11
1.00
1
O
0.00
17.821
6.014
6.051
A
H
ASP
11
ATOM
A
H
ASP
1
11
1.00
1
H
0.00
18.945
3.734
7.442
A
HA
ASP
11
ATOM
A
HA
ASP
1
11
1.00
1
H
0.00
20.440
6.321
7.123
A
HB2
ASP
11
ATOM
A
HB2
ASP
1
11
1.00
1
H
0.00
20.955
4.689
7.018
A
HB3
ASP
11
ATOM
A
HB3
ASP
1
11
1.00
1
H
0.00
18.708
6.722
8.940
A
N
GLU
12
ATOM
A
N
GLU
1
12
1.00
1
N
0.00
18.534
7.433
10.197
A
CA
GLU
12
ATOM
A
CA
GLU
1
12
1.00
1
C
0.00
17.811
8.758
9.932
A
C
GLU
12
ATOM
A
C
GLU
1
12
1.00
1
C
0.00
17.202
8.918
8.876
A
O
GLU
12
ATOM
A
O
GLU
1
12
1.00
1
O
0.00
19.922
7.650
10.846
A
CB
GLU
12
ATOM
A
CB
GLU
1
12
1.00
1
C
0.00
19.840
7.517
12.370
A
CG
GLU
12
ATOM
A
CG
GLU
1
12
1.00
1
C
0.00
21.190
7.801
13.024
A
CD
GLU
12
ATOM
A
CD
GLU
1
12
1.00
1
C
0.00
21.348
8.846
13.653
A
OE1
GLU
12
ATOM
A
OE1
GLU
1
12
1.00
1
O
0.00
22.148
6.843
12.860
A
OE2
GLU
12
ATOM
A
OE2
GLU
1
12
1.00
1
O
0.00
18.844
7.305
8.127
A
H
GLU
12
ATOM
A
H
GLU
1
12
1.00
1
H
0.00
17.861
6.863
10.846
A
HA
GLU
12
ATOM
A
HA
GLU
1
12
1.00
1
H
0.00
20.674
6.943
10.470
A
HB2
GLU
12
ATOM
A
HB2
GLU
1
12
1.00
1
H
0.00
20.285
8.647
10.594
A
HB3
GLU
12
ATOM
A
HB3
GLU
1
12
1.00
1
H
0.00
19.100
8.215
12.761
A
HG2
GLU
12
ATOM
A
HG2
GLU
1
12
1.00
1
H
0.00
19.530
6.503
12.627
A
HG3
GLU
12
ATOM
A
HG3
GLU
1
12
1.00
1
H
0.00
21.848
6.094
12.340
A
HE2
GLU
12
ATOM
A
HE2
GLU
1
12
1.00
1
H
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kanaori, K.
Kamei, K.
Koyama, T.
Yasui, T.
Takano, R.
Imada, C.
Tajima, K.
Hara, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
O
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
N
N
58
S
C
N
59
N
C
N
60
N
O
N
61
N
C
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
N
N
77
S
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
S
N
83
N
C
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
Y
101
N
C
Y
102
N
C
Y
103
N
C
Y
104
N
C
Y
105
N
C
Y
106
N
C
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
S
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
O
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
R
C
N
155
N
O
N
156
N
C
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
N
N
168
S
C
N
169
N
C
N
170
N
O
N
171
N
C
Y
172
N
C
Y
173
N
C
Y
174
N
C
Y
175
N
C
Y
176
N
C
Y
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
Y
102
N
doub
Y
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
Y
171
N
doub
Y
172
N
sing
Y
173
N
sing
N
174
N
sing
Y
175
N
doub
N
176
N
sing
Y
177
N
doub
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
44
2462
2468
10.1021/bi048034x
15709758
Solution structure of marinostatin, a natural ester-linked protein protease inhibitor
2005
10.2210/pdb1ixu/pdb
pdb_00001ixu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
x-ray
1
1.0
1419.494
marinostatin
marinostatin active fragment
1
nat
polymer
MstI
no
no
FATMRYPSDSDE
FATMRYPSDSDE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
marine microorganism
Alteromonas
sample
29456
Alteromonas sp.
B-10-31
chem_comp_atom
chem_comp_bond
database_2
pdbx_nmr_software
struct_conn
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Data collection
Database references
Derived calculations
1
0
2004-02-17
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
PDBJ
Y
PDBJ
2002-07-04
REL
This structure was determined using standard 2D homonuclear techniques.
structures with the lowest violation
50
1
2D NOESY
3.0
ambient
278
K
There are two ester linkages. One is located between
the side-chains of THR 3-ASP 9, the other between
SER 8-ASP 11.
simulated annealing
1
fewest violations
1mM Marinostatin
90% H2O/10% D2O
collection
UXNMR
9410001.2
data analysis
Felix
2.3
refinement
NMRchitect
2.0
500
Bruker
ARX
PHE
1
n
1
PHE
1
A
ALA
2
n
2
ALA
2
A
THR
3
n
3
THR
3
A
MET
4
n
4
MET
4
A
ARG
5
n
5
ARG
5
A
TYR
6
n
6
TYR
6
A
PRO
7
n
7
PRO
7
A
SER
8
n
8
SER
8
A
ASP
9
n
9
ASP
9
A
SER
10
n
10
SER
10
A
ASP
11
n
11
ASP
11
A
GLU
12
n
12
GLU
12
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
CD
OE2
GLU
GLU
12
12
0.113
0.011
1.252
1.365
N
1
A
SER
10
-148.02
26.02
Solution structure of marinostatin, a protease inhibitor, containing two ester linkages
1
N
N
covale
1.372
none
A
THR
3
A
OG1
THR
3
1_555
A
ASP
9
A
CG
ASP
9
1_555
covale
1.365
none
A
SER
8
A
OG
SER
8
1_555
A
ASP
11
A
CG
ASP
11
1_555
PROTEIN BINDING
PROTEASE INHIBITOR, ESTER LINKAGE, Protein Binding
A
TYR
6
A
TYR
6
1
A
PRO
7
A
PRO
7
-11.19
MARI_ALTSP
UNP
1
45
P29399
FATMRYPSDSDE
45
56
1IXU
1
12
P29399
A
1
1
12