1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Sakata, E. Yamaguchi, Y. Kurimoto, E. Kikuchi, J. Yokoyama, S. Kawahara, H. Yokosawa, H. Hattori, N. Mizuno, Y. Tanaka, K. Kato, K. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N C N 351 N C N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing UK EMBO REP. 1469-221X 4 301 306 10.1038/sj.embor.embor764 12634850 Parkin binds the Rpn10 subunit of 26S proteasomes through its ubiquitin-like domain 2003 10.2210/pdb1iyf/pdb pdb_00001iyf 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 9247.536 parkin 6.3.2.19 ubiquitin-like domain 1 man polymer no no GPLGSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQRPWR K GPLGSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQRPWR K A my_001000012.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli BL21(DE3)Codonplus PLASMID pGEX6P3 RIKEN Structural Genomics/Proteomics Initiative RSGI database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Data collection 1 0 2003-03-25 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 1 4 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details 5500 is chemical shift Y PDBJ Y PDBJ 2002-08-13 REL The structure was determined using triple-resonance NMR spectroscopy. structures with the lowest energy 50 10 3D_13C-separated_NOESY 3D_15N-separated_NOESY 2D_1H-coupled_1H-15N_HSQC 0.3 6.0 1 atm 303 K 0.3 6.0 1 atm 310 K The structures are based on a total of 720 restraints, 489 are NOE-derived distance constraints, 82 dihedral angle restraints, 129 residual dipolar coupling constraints, 20 distance restraints for hydrogen bonds. distance geometry, simulated annealing 1 lowest energy 0.1mM parkin ubiquitin-like domain U-15N, 13C; 50mM potassium phosphate buffer 90% H2O/10% D2O 0.1mM parkin ubiquitin-like domain U-15N, 13C; 50mM potassium phosphate buffer 90% H2O, 10% D2O, 5%-DMPC/DHPC; 90% H2O, 10% D2O, 5%-DMPC/DHPC/CTAB collection XwinNMR 2.6 data analysis XwinNMR 2.6 processing XwinNMR 2.6 Brunger structure solution CNS 1.1 Brunger refinement CNS 1.1 800 Bruker DRX n 1 -4 A n 2 -3 A n 3 -2 A n 4 -1 A n 5 0 A MET 1 n 6 MET 1 A ILE 2 n 7 ILE 2 A VAL 3 n 8 VAL 3 A PHE 4 n 9 PHE 4 A VAL 5 n 10 VAL 5 A ARG 6 n 11 ARG 6 A PHE 7 n 12 PHE 7 A ASN 8 n 13 ASN 8 A SER 9 n 14 SER 9 A SER 10 n 15 SER 10 A HIS 11 n 16 HIS 11 A GLY 12 n 17 GLY 12 A PHE 13 n 18 PHE 13 A PRO 14 n 19 PRO 14 A VAL 15 n 20 VAL 15 A GLU 16 n 21 GLU 16 A VAL 17 n 22 VAL 17 A ASP 18 n 23 ASP 18 A SER 19 n 24 SER 19 A ASP 20 n 25 ASP 20 A THR 21 n 26 THR 21 A SER 22 n 27 SER 22 A ILE 23 n 28 ILE 23 A PHE 24 n 29 PHE 24 A GLN 25 n 30 GLN 25 A LEU 26 n 31 LEU 26 A LYS 27 n 32 LYS 27 A GLU 28 n 33 GLU 28 A VAL 29 n 34 VAL 29 A VAL 30 n 35 VAL 30 A ALA 31 n 36 ALA 31 A LYS 32 n 37 LYS 32 A ARG 33 n 38 ARG 33 A GLN 34 n 39 GLN 34 A GLY 35 n 40 GLY 35 A VAL 36 n 41 VAL 36 A PRO 37 n 42 PRO 37 A ALA 38 n 43 ALA 38 A ASP 39 n 44 ASP 39 A GLN 40 n 45 GLN 40 A LEU 41 n 46 LEU 41 A ARG 42 n 47 ARG 42 A VAL 43 n 48 VAL 43 A ILE 44 n 49 ILE 44 A PHE 45 n 50 PHE 45 A ALA 46 n 51 ALA 46 A GLY 47 n 52 GLY 47 A LYS 48 n 53 LYS 48 A GLU 49 n 54 GLU 49 A LEU 50 n 55 LEU 50 A ARG 51 n 56 ARG 51 A ASN 52 n 57 ASN 52 A ASP 53 n 58 ASP 53 A TRP 54 n 59 TRP 54 A THR 55 n 60 THR 55 A VAL 56 n 61 VAL 56 A GLN 57 n 62 GLN 57 A ASN 58 n 63 ASN 58 A CYS 59 n 64 CYS 59 A ASP 60 n 65 ASP 60 A LEU 61 n 66 LEU 61 A ASP 62 n 67 ASP 62 A GLN 63 n 68 GLN 63 A GLN 64 n 69 GLN 64 A SER 65 n 70 SER 65 A ILE 66 n 71 ILE 66 A VAL 67 n 72 VAL 67 A HIS 68 n 73 HIS 68 A ILE 69 n 74 ILE 69 A VAL 70 n 75 VAL 70 A GLN 71 n 76 GLN 71 A ARG 72 n 77 ARG 72 A PRO 73 n 78 PRO 73 A TRP 74 n 79 TRP 74 A ARG 75 n 80 ARG 75 A LYS 76 n 81 LYS 76 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 13 A O PHE 18 A N VAL 5 A N VAL 10 A N ARG 6 A N ARG 11 A O ILE 69 A O ILE 74 A O VAL 70 A O VAL 75 A N ARG 42 A N ARG 47 A N PHE 45 A N PHE 50 A O LYS 48 A O LYS 53 1 A GLY -4 A GLY 1 1 Y 1 A PRO -3 A PRO 2 1 Y 1 A LEU -2 A LEU 3 1 Y 1 A GLY -1 A GLY 4 1 Y 1 A SER 0 A SER 5 1 Y 2 A GLY -4 A GLY 1 1 Y 2 A PRO -3 A PRO 2 1 Y 2 A LEU -2 A LEU 3 1 Y 2 A GLY -1 A GLY 4 1 Y 2 A SER 0 A SER 5 1 Y 3 A GLY -4 A GLY 1 1 Y 3 A PRO -3 A PRO 2 1 Y 3 A LEU -2 A LEU 3 1 Y 3 A GLY -1 A GLY 4 1 Y 3 A SER 0 A SER 5 1 Y 4 A GLY -4 A GLY 1 1 Y 4 A PRO -3 A PRO 2 1 Y 4 A LEU -2 A LEU 3 1 Y 4 A GLY -1 A GLY 4 1 Y 4 A SER 0 A SER 5 1 Y 5 A GLY -4 A GLY 1 1 Y 5 A PRO -3 A PRO 2 1 Y 5 A LEU -2 A LEU 3 1 Y 5 A GLY -1 A GLY 4 1 Y 5 A SER 0 A SER 5 1 Y 6 A GLY -4 A GLY 1 1 Y 6 A PRO -3 A PRO 2 1 Y 6 A LEU -2 A LEU 3 1 Y 6 A GLY -1 A GLY 4 1 Y 6 A SER 0 A SER 5 1 Y 7 A GLY -4 A GLY 1 1 Y 7 A PRO -3 A PRO 2 1 Y 7 A LEU -2 A LEU 3 1 Y 7 A GLY -1 A GLY 4 1 Y 7 A SER 0 A SER 5 1 Y 8 A GLY -4 A GLY 1 1 Y 8 A PRO -3 A PRO 2 1 Y 8 A LEU -2 A LEU 3 1 Y 8 A GLY -1 A GLY 4 1 Y 8 A SER 0 A SER 5 1 Y 9 A GLY -4 A GLY 1 1 Y 9 A PRO -3 A PRO 2 1 Y 9 A LEU -2 A LEU 3 1 Y 9 A GLY -1 A GLY 4 1 Y 9 A SER 0 A SER 5 1 Y 10 A GLY -4 A GLY 1 1 Y 10 A PRO -3 A PRO 2 1 Y 10 A LEU -2 A LEU 3 1 Y 10 A GLY -1 A GLY 4 1 Y 10 A SER 0 A SER 5 1 Y 1 A A O H PHE SER 7 9 1.55 1 A A O O ILE HIS 44 68 2.10 2 A A O H PHE SER 7 9 1.56 2 A A O O ILE HIS 44 68 2.10 3 A A O H PHE LYS 45 48 1.56 3 A A O H PHE SER 7 9 1.57 3 A A O O ILE HIS 44 68 2.11 4 A A O H PHE SER 7 9 1.55 4 A A O H PHE LYS 45 48 1.57 4 A A O O ILE HIS 44 68 2.10 5 A A O H PHE LYS 45 48 1.49 5 A A O H LEU ARG 41 72 1.56 5 A A O H PHE SER 7 9 1.56 5 A A O O ILE HIS 44 68 2.11 6 A A O O ILE HIS 44 68 2.10 7 A A H HB ARG THR 51 55 1.31 7 A A O H PHE SER 7 9 1.54 7 A A O O ILE HIS 44 68 2.04 8 A A O H PHE LYS 45 48 1.59 8 A A O O ILE HIS 44 68 2.10 9 A A O H ARG THR 51 55 1.55 9 A A O O ILE HIS 44 68 2.14 10 A A O O ILE HIS 44 68 2.12 10 A A O N ASN SER 8 10 2.18 1 A ASN 8 -63.01 69.22 1 A HIS 11 -160.52 115.51 1 A VAL 17 177.10 154.60 1 A THR 21 -37.18 154.39 1 A SER 22 -18.26 142.73 1 A ILE 23 -39.70 -39.43 1 A VAL 30 -58.46 -71.78 1 A PRO 37 -65.17 -152.24 1 A ALA 38 -106.54 -70.44 1 A LEU 41 -82.67 -143.33 1 A ALA 46 23.62 36.28 1 A LEU 50 -9.77 87.81 1 A VAL 56 -70.66 -133.45 1 A CYS 59 -81.36 -78.66 1 A ASP 60 -168.73 76.02 2 A ASN 8 -63.73 68.90 2 A VAL 17 178.88 152.40 2 A THR 21 -33.51 150.58 2 A SER 22 -17.30 142.99 2 A ILE 23 -39.69 -39.99 2 A VAL 30 -58.78 -73.41 2 A PRO 37 -66.30 -148.87 2 A ALA 38 -105.31 -68.02 2 A GLN 40 -53.20 -76.31 2 A LEU 41 -84.74 -138.36 2 A ALA 46 26.03 34.90 2 A LEU 50 -14.52 89.51 2 A VAL 56 -82.29 -133.53 2 A CYS 59 -96.71 -76.99 2 A ASP 60 -169.94 76.65 3 A ASN 8 -63.91 69.39 3 A VAL 17 175.41 157.59 3 A THR 21 -35.19 153.69 3 A SER 22 -16.62 144.27 3 A VAL 30 -61.88 -73.53 3 A PRO 37 -67.04 -147.57 3 A ALA 38 -105.96 -69.82 3 A GLN 40 -49.02 -77.32 3 A LEU 41 -81.94 -124.71 3 A ALA 46 26.87 37.86 3 A LEU 50 -25.05 107.64 3 A VAL 56 -82.26 -135.01 3 A CYS 59 -106.22 -79.10 3 A ASP 60 -165.39 76.46 4 A ASN 8 -64.13 68.53 4 A VAL 17 178.99 154.71 4 A THR 21 -34.35 152.42 4 A SER 22 -18.87 143.14 4 A VAL 30 -59.05 -74.01 4 A PRO 37 -68.20 -145.19 4 A ALA 38 -104.58 -65.68 4 A GLN 40 -43.95 -85.26 4 A LEU 41 -94.19 -113.89 4 A ALA 46 25.21 38.02 4 A LEU 50 -10.89 87.94 4 A VAL 56 -78.63 -134.36 4 A CYS 59 -96.09 -78.17 4 A ASP 60 -169.27 76.67 5 A ASN 8 -59.28 71.45 5 A VAL 17 178.86 152.73 5 A THR 21 -35.34 154.32 5 A SER 22 -18.12 142.79 5 A VAL 30 -57.12 -75.01 5 A PRO 37 -70.03 -148.35 5 A GLN 40 -56.27 92.59 5 A LEU 41 -69.90 -161.16 5 A ARG 42 70.58 44.74 5 A ALA 46 27.41 35.79 5 A LEU 50 -14.14 88.24 5 A VAL 56 -82.89 -136.88 5 A CYS 59 -104.08 -78.33 5 A ASP 60 -167.04 77.60 6 A ASN 8 -66.38 71.53 6 A SER 9 -163.93 -160.77 6 A SER 10 -49.41 177.09 6 A THR 21 -32.79 153.96 6 A SER 22 -20.69 143.95 6 A VAL 30 -67.03 -74.01 6 A PRO 37 -66.62 -142.36 6 A ALA 38 -104.68 -73.07 6 A LEU 41 -83.20 -138.74 6 A ALA 46 24.25 35.84 6 A LEU 50 -21.46 97.09 6 A VAL 56 -83.81 -137.35 6 A CYS 59 -101.45 -77.47 6 A ASP 60 -165.68 78.53 6 A VAL 70 -104.09 74.31 7 A ASN 8 -58.43 70.44 7 A VAL 17 -167.37 -169.33 7 A THR 21 -40.19 175.92 7 A SER 22 -40.18 154.93 7 A GLN 25 -58.82 -71.30 7 A VAL 30 -62.09 -74.57 7 A PRO 37 -65.48 -140.42 7 A ALA 38 -110.80 -74.89 7 A LEU 41 -91.83 -136.25 7 A ALA 46 77.21 31.85 7 A LEU 50 -14.64 82.16 7 A VAL 56 -51.65 -129.49 7 A CYS 59 -63.73 -72.15 7 A ASP 60 -166.40 74.94 7 A GLN 71 -118.57 60.51 8 A ASN 8 -64.46 72.72 8 A SER 9 -163.76 -161.15 8 A SER 10 -49.38 175.59 8 A VAL 17 179.61 156.03 8 A THR 21 -33.17 154.75 8 A SER 22 -20.63 143.67 8 A VAL 30 -55.42 -72.48 8 A PRO 37 -66.72 -149.79 8 A ALA 38 -105.83 -69.90 8 A GLN 40 -52.26 -73.01 8 A LEU 41 -82.13 -135.03 8 A ALA 46 22.53 37.91 8 A LEU 50 -22.70 97.46 8 A VAL 56 -81.81 -133.47 8 A CYS 59 -95.90 -78.03 8 A ASP 60 -168.41 76.01 9 A ASN 8 -66.76 71.92 9 A SER 9 -163.91 -159.43 9 A SER 10 -48.95 175.80 9 A VAL 17 -167.84 -166.43 9 A THR 21 -36.14 169.45 9 A SER 22 -33.88 148.20 9 A VAL 30 -57.67 -75.75 9 A PRO 37 -63.51 -147.30 9 A ALA 38 -108.79 -77.78 9 A GLN 40 -46.43 -71.10 9 A LEU 41 -90.12 -138.60 9 A ALA 46 40.61 28.69 9 A VAL 56 -79.88 -140.55 9 A CYS 59 -84.72 -73.67 9 A ASP 60 -170.66 84.14 10 A ASN 8 -42.76 178.09 10 A SER 9 -49.17 79.86 10 A VAL 17 176.39 156.35 10 A THR 21 -34.09 151.27 10 A SER 22 -17.96 143.92 10 A VAL 30 -62.53 -74.09 10 A PRO 37 -66.93 -144.20 10 A ALA 38 -107.09 -68.05 10 A GLN 40 -48.53 -81.96 10 A LEU 41 -87.33 -126.18 10 A ALA 46 26.62 37.89 10 A LEU 50 -21.66 103.14 10 A VAL 56 -80.75 -132.82 10 A CYS 59 -97.21 -78.24 10 A ASP 60 -168.68 76.39 10 A GLN 71 -117.39 70.69 Solution structure of ubiquitin-like domain of human parkin 1 N N A SER 22 A SER 27 HELX_P A GLN 34 A GLN 39 1 1 13 A VAL 56 A VAL 61 HELX_P A LEU 61 A LEU 66 1 2 6 LIGASE Ubiquitin fold, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, LIGASE PRKN2_HUMAN UNP 1 1 O60260 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQRPWRK 1 76 1IYF 1 76 O60260 A 1 6 81 1 cloning artifact GLY -4 1IYF A O60260 UNP 1 1 cloning artifact PRO -3 1IYF A O60260 UNP 2 1 cloning artifact LEU -2 1IYF A O60260 UNP 3 1 cloning artifact GLY -1 1IYF A O60260 UNP 4 1 cloning artifact SER 0 1IYF A O60260 UNP 5 5 anti-parallel parallel anti-parallel anti-parallel A HIS 11 A HIS 16 A VAL 15 A VAL 20 A ILE 2 A ILE 7 A PHE 7 A PHE 12 A GLN 64 A GLN 69 A VAL 70 A VAL 75 A ARG 42 A ARG 47 A PHE 45 A PHE 50 A LYS 48 A LYS 53 A GLU 49 A GLU 54 1 P 1