1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Katoh, E. Katoh, S. Minami, E. Yamazaki, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US J.Biol.Chem. JBCHA3 0071 0021-9258 278 15341 15348 10.1074/jbc.M210531200 12588869 High Precision NMR Structure and Function of the RING-H2 Finger Domain of EL5, a Rice Protein Whose Expression Is Increased upon Exposure to Pathogen-derived Oligosaccharides 2003 10.2210/pdb1iym/pdb pdb_00001iym 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 5985.849 EL5 RING-H2 finger domain 1 man polymer 65.409 ZINC ION 2 syn non-polymer no no AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n rice Oryza Escherichia Escherichia coli sample 4530 Oryza sativa 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET32a database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif database_2 pdbx_database_status pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other Database references Derived calculations Other 1 0 2003-07-22 1 1 2008-04-27 1 2 2011-07-13 1 3 2020-02-26 1 4 2023-06-14 _pdbx_database_status.status_code_cs _pdbx_nmr_software.name _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 5459 contains the chemical shifts PDBJ Y PDBJ 2002-08-30 REL REL REL REL ZN ZINC ION 50 15 3D_15N-separated_NOESY 4D_13C/15N-separated_NOESY 7.0 ambient 308 K distance geometry simulated annealing 15 1mM RING-H2 finger domain of EL5 U-15N, 13C; 20mM Tris-HCl buffer, 100mM NaCl, 20uM ZnSO4, 1mM DTT; 90%H2O, 10% D2O 90% H2O/10% D2O collection XwinNMR Deraglio data analysis NMRPipe Brunger refinement X-PLOR 3.1 750 Bruker DMX ZN 182 2 ZN ZN 182 A ZN 183 2 ZN ZN 183 A ALA 127 n 1 ALA 127 A MET 128 n 2 MET 128 A ASP 129 n 3 ASP 129 A ASP 130 n 4 ASP 130 A GLY 131 n 5 GLY 131 A VAL 132 n 6 VAL 132 A GLU 133 n 7 GLU 133 A CYS 134 n 8 CYS 134 A ALA 135 n 9 ALA 135 A VAL 136 n 10 VAL 136 A CYS 137 n 11 CYS 137 A LEU 138 n 12 LEU 138 A ALA 139 n 13 ALA 139 A GLU 140 n 14 GLU 140 A LEU 141 n 15 LEU 141 A GLU 142 n 16 GLU 142 A ASP 143 n 17 ASP 143 A GLY 144 n 18 GLY 144 A GLU 145 n 19 GLU 145 A GLU 146 n 20 GLU 146 A ALA 147 n 21 ALA 147 A ARG 148 n 22 ARG 148 A PHE 149 n 23 PHE 149 A LEU 150 n 24 LEU 150 A PRO 151 n 25 PRO 151 A ARG 152 n 26 ARG 152 A CYS 153 n 27 CYS 153 A GLY 154 n 28 GLY 154 A HIS 155 n 29 HIS 155 A GLY 156 n 30 GLY 156 A PHE 157 n 31 PHE 157 A HIS 158 n 32 HIS 158 A ALA 159 n 33 ALA 159 A GLU 160 n 34 GLU 160 A CYS 161 n 35 CYS 161 A VAL 162 n 36 VAL 162 A ASP 163 n 37 ASP 163 A MET 164 n 38 MET 164 A TRP 165 n 39 TRP 165 A LEU 166 n 40 LEU 166 A GLY 167 n 41 GLY 167 A SER 168 n 42 SER 168 A HIS 169 n 43 HIS 169 A SER 170 n 44 SER 170 A THR 171 n 45 THR 171 A CYS 172 n 46 CYS 172 A PRO 173 n 47 PRO 173 A LEU 174 n 48 LEU 174 A CYS 175 n 49 CYS 175 A ARG 176 n 50 ARG 176 A LEU 177 n 51 LEU 177 A THR 178 n 52 THR 178 A VAL 179 n 53 VAL 179 A VAL 180 n 54 VAL 180 A VAL 181 n 55 VAL 181 A author_defined_assembly 1 monomeric A CYS 134 A SG CYS 8 1_555 A ZN 182 B ZN ZN 1_555 A CYS 137 A SG CYS 11 1_555 108.1 A CYS 134 A SG CYS 8 1_555 A ZN 182 B ZN ZN 1_555 A HIS 158 A ND1 HIS 32 1_555 108.5 A CYS 137 A SG CYS 11 1_555 A ZN 182 B ZN ZN 1_555 A HIS 158 A ND1 HIS 32 1_555 111.0 A CYS 134 A SG CYS 8 1_555 A ZN 182 B ZN ZN 1_555 A CYS 161 A SG CYS 35 1_555 112.1 A CYS 137 A SG CYS 11 1_555 A ZN 182 B ZN ZN 1_555 A CYS 161 A SG CYS 35 1_555 108.2 A HIS 158 A ND1 HIS 32 1_555 A ZN 182 B ZN ZN 1_555 A CYS 161 A SG CYS 35 1_555 108.9 A CYS 153 A SG CYS 27 1_555 A ZN 183 C ZN ZN 1_555 A HIS 155 A ND1 HIS 29 1_555 107.5 A CYS 153 A SG CYS 27 1_555 A ZN 183 C ZN ZN 1_555 A CYS 172 A SG CYS 46 1_555 109.9 A HIS 155 A ND1 HIS 29 1_555 A ZN 183 C ZN ZN 1_555 A CYS 172 A SG CYS 46 1_555 109.9 A CYS 153 A SG CYS 27 1_555 A ZN 183 C ZN ZN 1_555 A CYS 175 A SG CYS 49 1_555 107.5 A HIS 155 A ND1 HIS 29 1_555 A ZN 183 C ZN ZN 1_555 A CYS 175 A SG CYS 49 1_555 113.6 A CYS 172 A SG CYS 46 1_555 A ZN 183 C ZN ZN 1_555 A CYS 175 A SG CYS 49 1_555 108.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 148 A N ARG 22 A O PHE 157 A O PHE 31 1 A ARG 148 0.268 SIDE CHAIN 1 A ARG 152 0.122 SIDE CHAIN 1 A ARG 176 0.272 SIDE CHAIN 2 A ARG 148 0.079 SIDE CHAIN 2 A ARG 152 0.253 SIDE CHAIN 2 A ARG 176 0.178 SIDE CHAIN 3 A ARG 152 0.218 SIDE CHAIN 3 A ARG 176 0.318 SIDE CHAIN 4 A ARG 148 0.206 SIDE CHAIN 4 A ARG 152 0.258 SIDE CHAIN 4 A ARG 176 0.298 SIDE CHAIN 5 A ARG 148 0.230 SIDE CHAIN 5 A ARG 152 0.212 SIDE CHAIN 5 A ARG 176 0.249 SIDE CHAIN 6 A ARG 148 0.178 SIDE CHAIN 6 A ARG 152 0.251 SIDE CHAIN 6 A ARG 176 0.307 SIDE CHAIN 7 A ARG 148 0.259 SIDE CHAIN 7 A ARG 152 0.317 SIDE CHAIN 7 A ARG 176 0.316 SIDE CHAIN 8 A ARG 148 0.222 SIDE CHAIN 8 A ARG 152 0.170 SIDE CHAIN 8 A ARG 176 0.196 SIDE CHAIN 9 A ARG 148 0.291 SIDE CHAIN 9 A ARG 176 0.311 SIDE CHAIN 10 A ARG 148 0.297 SIDE CHAIN 10 A ARG 152 0.311 SIDE CHAIN 10 A ARG 176 0.256 SIDE CHAIN 11 A ARG 148 0.305 SIDE CHAIN 11 A ARG 152 0.237 SIDE CHAIN 11 A ARG 176 0.246 SIDE CHAIN 12 A ARG 148 0.305 SIDE CHAIN 12 A ARG 152 0.318 SIDE CHAIN 12 A ARG 176 0.309 SIDE CHAIN 13 A ARG 148 0.274 SIDE CHAIN 13 A ARG 152 0.289 SIDE CHAIN 13 A ARG 176 0.280 SIDE CHAIN 14 A ARG 148 0.310 SIDE CHAIN 14 A ARG 152 0.255 SIDE CHAIN 14 A ARG 176 0.282 SIDE CHAIN 15 A ARG 148 0.175 SIDE CHAIN 15 A ARG 152 0.318 SIDE CHAIN 15 A ARG 176 0.316 SIDE CHAIN 1 A ASP 129 -85.32 45.64 1 A VAL 136 -98.85 -66.38 1 A LEU 141 -58.68 107.26 1 A CYS 153 -120.97 -50.60 1 A LEU 166 -70.84 -73.37 1 A SER 168 140.96 -62.61 1 A SER 170 -94.95 49.27 1 A ARG 176 102.28 35.46 1 A THR 178 -41.98 154.92 2 A LEU 138 73.50 42.07 2 A LEU 141 -58.39 106.59 2 A CYS 153 -120.51 -51.78 2 A SER 168 92.64 -53.71 2 A SER 170 -102.12 52.70 2 A ARG 176 101.92 35.72 2 A THR 178 -41.89 154.73 3 A VAL 136 -98.97 -66.37 3 A GLU 146 -114.56 73.44 3 A CYS 153 -120.40 -52.86 3 A LEU 166 -64.60 -71.15 3 A SER 168 127.08 -63.41 3 A SER 170 -95.82 51.15 3 A ARG 176 101.31 37.07 3 A THR 178 -41.99 155.13 4 A MET 128 -178.65 78.92 4 A VAL 136 -98.68 -66.34 4 A LEU 141 -58.63 98.20 4 A GLU 146 -118.19 79.87 4 A CYS 153 -120.51 -51.23 4 A LEU 166 -68.76 -72.47 4 A SER 168 136.23 -64.81 4 A SER 170 -95.23 50.59 4 A ARG 176 102.68 35.29 4 A THR 178 -41.82 155.22 5 A MET 128 71.76 82.77 5 A VAL 136 -98.59 -66.28 5 A LEU 141 -60.30 97.42 5 A LEU 166 -77.11 -74.09 5 A SER 168 144.67 -61.45 5 A SER 170 -94.58 44.71 5 A ARG 176 99.25 31.90 6 A VAL 136 -98.57 -66.13 6 A LEU 141 -58.32 95.82 6 A CYS 153 -120.88 -50.63 6 A PHE 157 -120.38 -169.55 6 A SER 168 91.27 -52.66 6 A SER 170 -101.85 43.74 6 A ARG 176 101.76 42.12 6 A THR 178 -41.48 153.79 7 A MET 128 56.56 -173.22 7 A VAL 136 -98.73 -66.18 7 A LEU 141 -58.53 95.74 7 A CYS 153 -120.68 -51.13 7 A LEU 166 -73.55 -72.84 7 A SER 168 137.72 -64.45 7 A SER 170 -96.43 50.49 7 A ARG 176 102.07 38.03 7 A THR 178 -41.60 154.96 8 A VAL 136 -98.73 -66.33 8 A CYS 153 -120.91 -50.23 8 A HIS 158 -49.17 154.68 8 A SER 168 90.96 -53.03 8 A SER 170 -101.34 48.36 8 A ARG 176 101.49 41.14 8 A THR 178 -41.65 150.52 9 A ASP 130 -104.43 65.33 9 A VAL 136 -98.76 -66.11 9 A LEU 141 -58.16 95.63 9 A CYS 153 -120.99 -51.34 9 A PHE 157 -123.58 -168.99 9 A LEU 166 -75.96 -73.98 9 A SER 168 143.71 -60.48 9 A SER 170 -94.61 48.35 9 A ARG 176 101.82 37.67 9 A THR 178 -42.17 154.80 10 A CYS 134 -50.85 109.67 10 A VAL 136 -98.59 -66.31 10 A CYS 153 -120.47 -51.26 10 A LEU 166 -68.51 -72.22 10 A SER 168 134.12 -63.39 10 A SER 170 -94.87 48.91 10 A ARG 176 102.12 35.46 10 A THR 178 -42.04 155.16 11 A MET 128 52.28 -174.23 11 A VAL 136 -98.66 -66.37 11 A CYS 153 -120.73 -52.09 11 A SER 168 88.88 -52.02 11 A SER 170 -99.56 53.58 11 A ARG 176 102.00 36.37 11 A THR 178 -42.05 154.95 12 A MET 128 -160.35 64.73 12 A VAL 136 -98.69 -66.34 12 A CYS 153 -120.48 -51.66 12 A SER 168 91.33 -53.21 12 A SER 170 -99.29 52.11 12 A ARG 176 101.41 36.20 12 A THR 178 -42.14 155.17 13 A MET 128 -156.42 69.19 13 A LEU 138 78.10 41.55 13 A LEU 166 -77.66 -74.17 13 A SER 168 144.02 -58.74 13 A SER 170 -96.37 42.52 13 A ARG 176 100.29 32.96 14 A MET 128 47.44 95.74 14 A ASP 130 -98.52 40.53 14 A VAL 136 -98.69 -66.47 14 A LEU 141 -58.26 101.26 14 A CYS 153 -120.99 -51.85 14 A HIS 158 -49.00 157.25 14 A LEU 166 -74.06 -73.39 14 A SER 168 139.54 -62.51 14 A SER 170 -95.03 36.15 14 A ARG 176 100.24 29.82 15 A MET 128 67.84 123.50 15 A VAL 136 -98.85 -66.25 15 A LEU 141 -58.28 96.99 15 A CYS 153 -120.79 -51.94 15 A LEU 166 -74.63 -73.62 15 A SER 168 143.00 -60.74 15 A SER 170 -94.46 48.91 15 A ARG 176 101.88 36.17 15 A THR 178 -41.95 154.68 RING-H2 finger domain of EL5 1 N N 2 N N 2 N N A GLU 160 A GLU 34 HELX_P A TRP 165 A TRP 39 1 1 6 metalc 2.293 A CYS 134 A SG CYS 8 1_555 A ZN 182 B ZN ZN 1_555 metalc 2.278 A CYS 137 A SG CYS 11 1_555 A ZN 182 B ZN ZN 1_555 metalc 2.277 A CYS 153 A SG CYS 27 1_555 A ZN 183 C ZN ZN 1_555 metalc 2.099 A HIS 155 A ND1 HIS 29 1_555 A ZN 183 C ZN ZN 1_555 metalc 2.082 A HIS 158 A ND1 HIS 32 1_555 A ZN 182 B ZN ZN 1_555 metalc 2.300 A CYS 161 A SG CYS 35 1_555 A ZN 182 B ZN ZN 1_555 metalc 2.301 A CYS 172 A SG CYS 46 1_555 A ZN 183 C ZN ZN 1_555 metalc 2.309 A CYS 175 A SG CYS 49 1_555 A ZN 183 C ZN ZN 1_555 DNA BINDING PROTEIN RING-H2 finger, ubiquitin ligase, DNA binding protein EL5_ORYSA UNP 1 129 Q9LRB7 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 129 181 1IYM 129 181 Q9LRB7 A 1 3 55 1 cloning artifact ALA 127 1IYM A Q9LRB7 UNP 1 1 cloning artifact MET 128 1IYM A Q9LRB7 UNP 2 2 anti-parallel A ARG 148 A ARG 22 A PHE 149 A PHE 23 A GLY 156 A GLY 30 A PHE 157 A PHE 31 BINDING SITE FOR RESIDUE ZN A 182 A ZN 182 Software 4 BINDING SITE FOR RESIDUE ZN A 183 A ZN 183 Software 4 A CYS 134 A CYS 8 4 1_555 A CYS 137 A CYS 11 4 1_555 A HIS 158 A HIS 32 4 1_555 A CYS 161 A CYS 35 4 1_555 A CYS 153 A CYS 27 4 1_555 A HIS 155 A HIS 29 4 1_555 A CYS 172 A CYS 46 4 1_555 A CYS 175 A CYS 49 4 1_555