1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Crescenzi, O. Tomaselli, S. Guerrini, R. Salvadori, S. D'Ursi, A.M. Temussi, P.A. Picone, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 S C N 149 N C N 150 N C N 151 N C N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N C N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N C N 195 N C N 196 N N N 197 N O N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C N 218 N C N 219 N S N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N N N 234 S C N 235 N C N 236 N O N 237 N C Y 238 N C Y 239 N C Y 240 N C Y 241 N C Y 242 N C Y 243 N C N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 N C N 261 N O N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C Y 275 N C Y 276 N C Y 277 N C Y 278 N C Y 279 N C Y 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C N 299 N C N 300 N C N 301 N O N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing Y 233 N doub Y 234 N sing Y 235 N sing N 236 N sing Y 237 N doub N 238 N sing Y 239 N doub N 240 N sing Y 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing Y 269 N doub Y 270 N sing Y 271 N sing N 272 N sing Y 273 N doub N 274 N sing Y 275 N doub N 276 N sing Y 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing IX EUR.J.BIOCHEM. EJBCAI 0262 0014-2956 269 5642 5648 10.1046/j.1432-1033.2002.03271.x 12423364 Solution structure of the Alzheimer amyloid beta-peptide (1-42) in an apolar microenvironment. Similarity with a virus fusion domain. 2002 10.2210/pdb1iyt/pdb pdb_00001iyt 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 4520.087 Alzheimer's disease amyloid beta-peptide 1 syn polymer Alzheimer's disease amyloid A4 protein no no DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Data collection 1 0 2003-02-11 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 1 4 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name PDBJ Y PDBJ 2002-09-06 REL The peptide was prepared by solid-phase synthesis. The sequence of the peptide is naturally found in Homo sapiens (human). sample The structure was determined using standard 2D homonuclear techniques structures with the least restraint violations 20 10 2D NOESY 2D NOESY ambient 300 K the structures are based on a total of 413 NOE-derived, non-redundant restraints (130 intra-residue, 283 inter-residue) torsion angle dynamics and restrained minimization 2mM amyloid beta-peptide (TFA pretreated); 20% H2O, 80% hexafluoroisopropanol-d2 20% H2O, 80% hexafluoroisopropanol-d2 (v/v) 2.5mM amyloid beta-peptide (TFA pretreated); 20% D2O, 80% hexafluoroisopropanol-d2 20% D2O, 80% hexafluoroisopropanol-d2 (v/v) collection XwinNMR 1.3 Delaglio processing NMRPipe 1.5 Johnson data analysis NMRView 4.0.3 Guentert structure solution DYANA 1.5 Case, Pearlman et al. refinement Amber 6 600 Bruker DRX ASP 1 n 1 ASP 1 A ALA 2 n 2 ALA 2 A GLU 3 n 3 GLU 3 A PHE 4 n 4 PHE 4 A ARG 5 n 5 ARG 5 A HIS 6 n 6 HIS 6 A ASP 7 n 7 ASP 7 A SER 8 n 8 SER 8 A GLY 9 n 9 GLY 9 A TYR 10 n 10 TYR 10 A GLU 11 n 11 GLU 11 A VAL 12 n 12 VAL 12 A HIS 13 n 13 HIS 13 A HIS 14 n 14 HIS 14 A GLN 15 n 15 GLN 15 A LYS 16 n 16 LYS 16 A LEU 17 n 17 LEU 17 A VAL 18 n 18 VAL 18 A PHE 19 n 19 PHE 19 A PHE 20 n 20 PHE 20 A ALA 21 n 21 ALA 21 A GLU 22 n 22 GLU 22 A ASP 23 n 23 ASP 23 A VAL 24 n 24 VAL 24 A GLY 25 n 25 GLY 25 A SER 26 n 26 SER 26 A ASN 27 n 27 ASN 27 A LYS 28 n 28 LYS 28 A GLY 29 n 29 GLY 29 A ALA 30 n 30 ALA 30 A ILE 31 n 31 ILE 31 A ILE 32 n 32 ILE 32 A GLY 33 n 33 GLY 33 A LEU 34 n 34 LEU 34 A MET 35 n 35 MET 35 A VAL 36 n 36 VAL 36 A GLY 37 n 37 GLY 37 A GLY 38 n 38 GLY 38 A VAL 39 n 39 VAL 39 A VAL 40 n 40 VAL 40 A ILE 41 n 41 ILE 41 A ALA 42 n 42 ALA 42 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 3 A TYR 10 0.076 SIDE CHAIN 4 A TYR 10 0.095 SIDE CHAIN 5 A TYR 10 0.084 SIDE CHAIN 8 A TYR 10 0.065 SIDE CHAIN 10 A TYR 10 0.075 SIDE CHAIN 1 A A CD OE2 GLU GLU 3 3 0.111 0.011 1.252 1.363 N 1 A A CD OE2 GLU GLU 11 11 0.107 0.011 1.252 1.359 N 1 A A CD OE2 GLU GLU 22 22 0.105 0.011 1.252 1.357 N 2 A A CD OE2 GLU GLU 3 3 0.106 0.011 1.252 1.358 N 2 A A CD OE2 GLU GLU 11 11 0.106 0.011 1.252 1.358 N 2 A A CD OE2 GLU GLU 22 22 0.108 0.011 1.252 1.360 N 3 A A CD OE2 GLU GLU 3 3 0.107 0.011 1.252 1.359 N 3 A A CD OE2 GLU GLU 11 11 0.108 0.011 1.252 1.360 N 3 A A CD OE2 GLU GLU 22 22 0.107 0.011 1.252 1.359 N 4 A A CD OE2 GLU GLU 3 3 0.105 0.011 1.252 1.357 N 4 A A CD OE2 GLU GLU 11 11 0.108 0.011 1.252 1.360 N 4 A A CD OE2 GLU GLU 22 22 0.105 0.011 1.252 1.357 N 5 A A CD OE2 GLU GLU 3 3 0.110 0.011 1.252 1.362 N 5 A A CD OE2 GLU GLU 11 11 0.106 0.011 1.252 1.358 N 5 A A CD OE2 GLU GLU 22 22 0.109 0.011 1.252 1.361 N 6 A A CD OE2 GLU GLU 3 3 0.106 0.011 1.252 1.358 N 6 A A CD OE2 GLU GLU 11 11 0.110 0.011 1.252 1.362 N 6 A A CD OE2 GLU GLU 22 22 0.105 0.011 1.252 1.357 N 7 A A CD OE2 GLU GLU 3 3 0.109 0.011 1.252 1.361 N 7 A A CD OE2 GLU GLU 11 11 0.108 0.011 1.252 1.360 N 7 A A CD OE2 GLU GLU 22 22 0.109 0.011 1.252 1.361 N 8 A A CD OE2 GLU GLU 3 3 0.109 0.011 1.252 1.361 N 8 A A CD OE2 GLU GLU 11 11 0.113 0.011 1.252 1.365 N 8 A A CD OE2 GLU GLU 22 22 0.110 0.011 1.252 1.362 N 9 A A CD OE2 GLU GLU 3 3 0.109 0.011 1.252 1.361 N 9 A A CD OE2 GLU GLU 11 11 0.110 0.011 1.252 1.362 N 9 A A CD OE2 GLU GLU 22 22 0.105 0.011 1.252 1.357 N 10 A A CD OE2 GLU GLU 3 3 0.110 0.011 1.252 1.362 N 10 A A CD OE2 GLU GLU 11 11 0.106 0.011 1.252 1.358 N 10 A A CD OE2 GLU GLU 22 22 0.109 0.011 1.252 1.361 N 1 A ALA 2 -150.20 -72.13 1 A ASP 7 -101.38 -60.46 1 A VAL 12 -44.31 -80.52 1 A LYS 16 -36.95 -37.62 1 A SER 26 -81.26 30.11 1 A ASN 27 -156.60 32.36 2 A ALA 2 76.34 -63.58 2 A PHE 4 77.83 -50.41 2 A ASP 7 -69.37 31.43 2 A VAL 24 -97.11 -60.40 2 A SER 26 -96.22 35.44 2 A ASN 27 -152.37 30.33 2 A ILE 32 -32.40 -39.79 3 A ALA 2 171.45 -62.29 3 A PHE 4 69.03 -24.75 3 A ARG 5 -122.54 -52.07 3 A ASP 7 -172.52 -64.01 3 A VAL 12 -49.65 -89.41 3 A ASN 27 -160.29 34.03 3 A ILE 32 -47.09 159.62 4 A ALA 2 -158.75 -68.21 4 A HIS 6 -89.09 -135.94 4 A ASN 27 -144.51 48.47 4 A ILE 32 -36.44 159.58 5 A ALA 2 72.10 -32.83 5 A VAL 12 -39.51 -72.84 5 A ASN 27 -159.94 36.14 6 A ALA 2 -162.32 68.03 6 A GLU 3 66.31 -2.17 6 A HIS 6 -76.67 43.27 6 A ASP 7 -176.48 -73.13 6 A VAL 12 -51.09 -85.64 6 A SER 26 -90.15 32.30 6 A ASN 27 -153.45 31.45 7 A ASN 27 -148.27 39.69 8 A ALA 2 -90.36 -82.64 8 A GLU 3 -154.79 39.05 8 A ASP 7 -73.72 25.42 8 A ASN 27 -140.75 32.58 9 A ALA 2 71.75 103.03 9 A HIS 6 -95.06 -128.15 9 A VAL 12 -38.04 -77.57 9 A VAL 18 -97.30 -62.00 9 A ASN 27 -144.02 39.71 10 A ALA 2 -162.67 -63.24 10 A PHE 4 65.97 -12.37 10 A ARG 5 -130.77 -48.29 10 A TYR 10 -71.22 -70.79 10 A ASN 27 -153.46 37.33 Solution structure of the Alzheimer's disease amyloid beta-peptide (1-42) 1 N N A ASP 7 A ASP 7 HELX_P A SER 26 A SER 26 1 1 20 A ASN 27 A ASN 27 HELX_P A VAL 40 A VAL 40 1 2 14 PROTEIN BINDING Amyloid beta-peptide, Alzheimers disease, helix-kink-helix, PROTEIN BINDING A4_HUMAN UNP 1 672 P05067 DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA 672 713 1IYT 1 42 P05067 A 1 1 42