1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Berg, A. Vervoort, J. De Kok, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N O N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N N N 58 S C N 59 N C N 60 N O N 61 N C N 62 N C N 63 N C N 64 N O N 65 N N N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N N N 78 S C N 79 N C N 80 N O N 81 N C N 82 N C N 83 N C N 84 N O N 85 N O N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 N C N 98 N C N 99 N O N 100 N O N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N N N 107 S C N 108 N C N 109 N O N 110 S C N 111 N C N 112 N C N 113 N C N 114 N O N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 S C N 130 N C N 131 N O N 132 N C N 133 N C N 134 N C N 135 N C N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N N N 151 S C N 152 N C N 153 N O N 154 N C N 155 N C N 156 N C N 157 N C N 158 N N N 159 N O N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 N C N 180 N C N 181 N S N 182 N C N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N O N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N N N 213 S C N 214 N C N 215 N O N 216 N C N 217 N O N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 R C N 231 N O N 232 N C N 233 N O N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N N N 244 S C N 245 N C N 246 N O N 247 N C N 248 N C N 249 N C N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing IX Eur.J.Biochem. EJBCAI 0262 0014-2956 244 352 360 10.1111/j.1432-1033.1997.00352.x 9119000 Three-dimensional structure in solution of the N-terminal lipoyl domain of the pyruvate dehydrogenase complex from Azotobacter vinelandii. 1997 UK J.Mol.Biol. JMOBAK 0070 0022-2836 261 432 Solution Structure of the Lipoyl Domain of the 2-Oxoglutarate Dehydrogenase Complex from Azotobacter Vinelandii 1996 IX Eur.J.Biochem. EJBCAI 0262 0014-2956 234 148 Sequential 1H and 15N Nuclear Magnetic Resonance Assignments and Secondary Structure of the Lipoyl Domain of the 2-Oxoglutarate Dehydrogenase Complex from Azotobacter Vinelandii. Evidence for High Structural Similarity with the Lipoyl Domain of the Pyruvate Dehydrogenase Complex 1995 IX Eur.J.Biochem. EJBCAI 0262 0014-2956 221 87 Sequential 1H and 15N Nuclear Magnetic Resonance Assignments and Secondary Structure of the N-Terminal Lipoyl Domain of the Dihydrolipoyl Transacetylase Component of the Pyruvate Dehydrogenase Complex from Azotobacter Vinelandii 1994 10.2210/pdb1iyu/pdb pdb_00001iyu 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 8173.404 DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX 2.3.1.12 LIPOYL DOMAIN, RESIDUES 1 - 79 1 nat polymer E2P no no SEIIRVPDIGGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGAR SEIIRVPDIGGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGAR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Azotobacter sample 354 Azotobacter vinelandii database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Other Data collection 1 0 1997-03-12 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-23 1 4 2024-05-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1996-09-25 REL REL 1 BRUNGER refinement X-PLOR 3.1 SER 1 n 1 SER 1 A GLU 2 n 2 GLU 2 A ILE 3 n 3 ILE 3 A ILE 4 n 4 ILE 4 A ARG 5 n 5 ARG 5 A VAL 6 n 6 VAL 6 A PRO 7 n 7 PRO 7 A ASP 8 n 8 ASP 8 A ILE 9 n 9 ILE 9 A GLY 10 n 10 GLY 10 A GLY 11 n 11 GLY 11 A ASP 12 n 12 ASP 12 A GLY 13 n 13 GLY 13 A GLU 14 n 14 GLU 14 A VAL 15 n 15 VAL 15 A ILE 16 n 16 ILE 16 A GLU 17 n 17 GLU 17 A LEU 18 n 18 LEU 18 A LEU 19 n 19 LEU 19 A VAL 20 n 20 VAL 20 A LYS 21 n 21 LYS 21 A THR 22 n 22 THR 22 A GLY 23 n 23 GLY 23 A ASP 24 n 24 ASP 24 A LEU 25 n 25 LEU 25 A ILE 26 n 26 ILE 26 A GLU 27 n 27 GLU 27 A VAL 28 n 28 VAL 28 A GLU 29 n 29 GLU 29 A GLN 30 n 30 GLN 30 A GLY 31 n 31 GLY 31 A LEU 32 n 32 LEU 32 A VAL 33 n 33 VAL 33 A VAL 34 n 34 VAL 34 A LEU 35 n 35 LEU 35 A GLU 36 n 36 GLU 36 A SER 37 n 37 SER 37 A ALA 38 n 38 ALA 38 A LYS 39 n 39 LYS 39 A ALA 40 n 40 ALA 40 A SER 41 n 41 SER 41 A MET 42 n 42 MET 42 A GLU 43 n 43 GLU 43 A VAL 44 n 44 VAL 44 A PRO 45 n 45 PRO 45 A SER 46 n 46 SER 46 A PRO 47 n 47 PRO 47 A LYS 48 n 48 LYS 48 A ALA 49 n 49 ALA 49 A GLY 50 n 50 GLY 50 A VAL 51 n 51 VAL 51 A VAL 52 n 52 VAL 52 A LYS 53 n 53 LYS 53 A SER 54 n 54 SER 54 A VAL 55 n 55 VAL 55 A SER 56 n 56 SER 56 A VAL 57 n 57 VAL 57 A LYS 58 n 58 LYS 58 A LEU 59 n 59 LEU 59 A GLY 60 n 60 GLY 60 A ASP 61 n 61 ASP 61 A LYS 62 n 62 LYS 62 A LEU 63 n 63 LEU 63 A LYS 64 n 64 LYS 64 A GLU 65 n 65 GLU 65 A GLY 66 n 66 GLY 66 A ASP 67 n 67 ASP 67 A ALA 68 n 68 ALA 68 A ILE 69 n 69 ILE 69 A ILE 70 n 70 ILE 70 A GLU 71 n 71 GLU 71 A LEU 72 n 72 LEU 72 A GLU 73 n 73 GLU 73 A PRO 74 n 74 PRO 74 A ALA 75 n 75 ALA 75 A ALA 76 n 76 ALA 76 A GLY 77 n 77 GLY 77 A ALA 78 n 78 ALA 78 A ARG 79 n 79 ARG 79 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 63 A O LEU 63 A N GLY 13 A N GLY 13 A O GLU 14 A O GLU 14 A N GLU 36 A N GLU 36 A O LEU 32 A O LEU 32 A N VAL 44 A N VAL 44 A O GLU 2 A O GLU 2 A N LEU 72 A N LEU 72 A O GLU 71 A O GLU 71 A N SER 54 A N SER 54 1 A ARG 5 0.186 SIDE CHAIN 1 A ARG 79 0.317 SIDE CHAIN 1 A GLU 29 161.53 -48.23 1 A LYS 39 -150.15 20.55 1 A ALA 40 163.85 137.65 1 A PRO 45 -77.82 -168.32 1 A ALA 75 -45.96 98.24 1 A ALA 78 47.49 -93.10 model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 LIPOYL DOMAIN OF PYRUVATE DEHYDROGENASE COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE 1 Y N ACYLTRANSFERASE GLYCOLYSIS, TRANSFERASE, ACYLTRANSFERASE, LIPOYL ODP2_AZOVI UNP 1 1 P10802 SEIIRVPDIGGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGAAA APAEAAAVPAAPTQAVDEAEAPSPGASATPAPAAASQEVRVPDIGSAGKARVIEVLVKAGDQVQAEQSLIVLESDKASME IPSPASGVVESVAIQLNAEVGTGDLILTLRTTGAQAQPTAPAAAAAASPAPAPLAPAAAGPQEVKVPDIGSAGKARVIEV LVKAGDQVQAEQSLIVLESDKASMEIPSPAAGVVESVAVQLNAEVGTGDQILTLRVAGAAPSGPRARGSPGQAAAAPGAA PAPAPVGAPSRNGAKVHAGPAVRQLAREFGVELAAINSTGPRGRILKEDVQAYVKAMMQKAKEAPAAGAASGAGIPPIPP VDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKE LPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSL GHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL 1 78 1IYU 1 78 P10802 A 1 1 78 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 62 A LYS 62 A LYS 64 A LYS 64 A ASP 12 A ASP 12 A LEU 18 A LEU 18 A GLY 31 A GLY 31 A GLU 36 A GLU 36 A SER 41 A SER 41 A PRO 45 A PRO 45 A GLU 2 A GLU 2 A ARG 5 A ARG 5 A ALA 68 A ALA 68 A GLU 73 A GLU 73 A VAL 51 A VAL 51 A VAL 55 A VAL 55 LYS 39 IS THE LIPOYLATION SITE WHERE LIPOIC ACID (6,8 THIOCTIC ACID) IS COVALENTLY ATTACHED VIA AN AMIDE LINKAGE TO THE LYSINE SIDE CHAIN. Unknown 1 A LYS 39 A LYS 39 1 1_555 1 P 1