1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Berg, A.
Vervoort, J.
De Kok, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
O
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
N
N
58
S
C
N
59
N
C
N
60
N
O
N
61
N
C
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
N
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
N
C
N
98
N
C
N
99
N
O
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
S
C
N
111
N
C
N
112
N
C
N
113
N
C
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
S
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
C
N
134
N
C
N
135
N
C
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
N
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
N
C
N
180
N
C
N
181
N
S
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
N
217
N
O
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
R
C
N
231
N
O
N
232
N
C
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
244
352
360
10.1111/j.1432-1033.1997.00352.x
9119000
Three-dimensional structure in solution of the N-terminal lipoyl domain of the pyruvate dehydrogenase complex from Azotobacter vinelandii.
1997
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
261
432
Solution Structure of the Lipoyl Domain of the 2-Oxoglutarate Dehydrogenase Complex from Azotobacter Vinelandii
1996
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
234
148
Sequential 1H and 15N Nuclear Magnetic Resonance Assignments and Secondary Structure of the Lipoyl Domain of the 2-Oxoglutarate Dehydrogenase Complex from Azotobacter Vinelandii. Evidence for High Structural Similarity with the Lipoyl Domain of the Pyruvate Dehydrogenase Complex
1995
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
221
87
Sequential 1H and 15N Nuclear Magnetic Resonance Assignments and Secondary Structure of the N-Terminal Lipoyl Domain of the Dihydrolipoyl Transacetylase Component of the Pyruvate Dehydrogenase Complex from Azotobacter Vinelandii
1994
10.2210/pdb1iyu/pdb
pdb_00001iyu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8173.404
DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX
2.3.1.12
LIPOYL DOMAIN, RESIDUES 1 - 79
1
nat
polymer
E2P
no
no
SEIIRVPDIGGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGAR
SEIIRVPDIGGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGAR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Azotobacter
sample
354
Azotobacter vinelandii
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
Data collection
1
0
1997-03-12
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1996-09-25
REL
REL
1
BRUNGER
refinement
X-PLOR
3.1
SER
1
n
1
SER
1
A
GLU
2
n
2
GLU
2
A
ILE
3
n
3
ILE
3
A
ILE
4
n
4
ILE
4
A
ARG
5
n
5
ARG
5
A
VAL
6
n
6
VAL
6
A
PRO
7
n
7
PRO
7
A
ASP
8
n
8
ASP
8
A
ILE
9
n
9
ILE
9
A
GLY
10
n
10
GLY
10
A
GLY
11
n
11
GLY
11
A
ASP
12
n
12
ASP
12
A
GLY
13
n
13
GLY
13
A
GLU
14
n
14
GLU
14
A
VAL
15
n
15
VAL
15
A
ILE
16
n
16
ILE
16
A
GLU
17
n
17
GLU
17
A
LEU
18
n
18
LEU
18
A
LEU
19
n
19
LEU
19
A
VAL
20
n
20
VAL
20
A
LYS
21
n
21
LYS
21
A
THR
22
n
22
THR
22
A
GLY
23
n
23
GLY
23
A
ASP
24
n
24
ASP
24
A
LEU
25
n
25
LEU
25
A
ILE
26
n
26
ILE
26
A
GLU
27
n
27
GLU
27
A
VAL
28
n
28
VAL
28
A
GLU
29
n
29
GLU
29
A
GLN
30
n
30
GLN
30
A
GLY
31
n
31
GLY
31
A
LEU
32
n
32
LEU
32
A
VAL
33
n
33
VAL
33
A
VAL
34
n
34
VAL
34
A
LEU
35
n
35
LEU
35
A
GLU
36
n
36
GLU
36
A
SER
37
n
37
SER
37
A
ALA
38
n
38
ALA
38
A
LYS
39
n
39
LYS
39
A
ALA
40
n
40
ALA
40
A
SER
41
n
41
SER
41
A
MET
42
n
42
MET
42
A
GLU
43
n
43
GLU
43
A
VAL
44
n
44
VAL
44
A
PRO
45
n
45
PRO
45
A
SER
46
n
46
SER
46
A
PRO
47
n
47
PRO
47
A
LYS
48
n
48
LYS
48
A
ALA
49
n
49
ALA
49
A
GLY
50
n
50
GLY
50
A
VAL
51
n
51
VAL
51
A
VAL
52
n
52
VAL
52
A
LYS
53
n
53
LYS
53
A
SER
54
n
54
SER
54
A
VAL
55
n
55
VAL
55
A
SER
56
n
56
SER
56
A
VAL
57
n
57
VAL
57
A
LYS
58
n
58
LYS
58
A
LEU
59
n
59
LEU
59
A
GLY
60
n
60
GLY
60
A
ASP
61
n
61
ASP
61
A
LYS
62
n
62
LYS
62
A
LEU
63
n
63
LEU
63
A
LYS
64
n
64
LYS
64
A
GLU
65
n
65
GLU
65
A
GLY
66
n
66
GLY
66
A
ASP
67
n
67
ASP
67
A
ALA
68
n
68
ALA
68
A
ILE
69
n
69
ILE
69
A
ILE
70
n
70
ILE
70
A
GLU
71
n
71
GLU
71
A
LEU
72
n
72
LEU
72
A
GLU
73
n
73
GLU
73
A
PRO
74
n
74
PRO
74
A
ALA
75
n
75
ALA
75
A
ALA
76
n
76
ALA
76
A
GLY
77
n
77
GLY
77
A
ALA
78
n
78
ALA
78
A
ARG
79
n
79
ARG
79
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
63
A
O
LEU
63
A
N
GLY
13
A
N
GLY
13
A
O
GLU
14
A
O
GLU
14
A
N
GLU
36
A
N
GLU
36
A
O
LEU
32
A
O
LEU
32
A
N
VAL
44
A
N
VAL
44
A
O
GLU
2
A
O
GLU
2
A
N
LEU
72
A
N
LEU
72
A
O
GLU
71
A
O
GLU
71
A
N
SER
54
A
N
SER
54
1
A
ARG
5
0.186
SIDE CHAIN
1
A
ARG
79
0.317
SIDE CHAIN
1
A
GLU
29
161.53
-48.23
1
A
LYS
39
-150.15
20.55
1
A
ALA
40
163.85
137.65
1
A
PRO
45
-77.82
-168.32
1
A
ALA
75
-45.96
98.24
1
A
ALA
78
47.49
-93.10
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
LIPOYL DOMAIN OF PYRUVATE DEHYDROGENASE COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE
1
Y
N
ACYLTRANSFERASE
GLYCOLYSIS, TRANSFERASE, ACYLTRANSFERASE, LIPOYL
ODP2_AZOVI
UNP
1
1
P10802
SEIIRVPDIGGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGAAA
APAEAAAVPAAPTQAVDEAEAPSPGASATPAPAAASQEVRVPDIGSAGKARVIEVLVKAGDQVQAEQSLIVLESDKASME
IPSPASGVVESVAIQLNAEVGTGDLILTLRTTGAQAQPTAPAAAAAASPAPAPLAPAAAGPQEVKVPDIGSAGKARVIEV
LVKAGDQVQAEQSLIVLESDKASMEIPSPAAGVVESVAVQLNAEVGTGDQILTLRVAGAAPSGPRARGSPGQAAAAPGAA
PAPAPVGAPSRNGAKVHAGPAVRQLAREFGVELAAINSTGPRGRILKEDVQAYVKAMMQKAKEAPAAGAASGAGIPPIPP
VDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKE
LPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSL
GHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL
1
78
1IYU
1
78
P10802
A
1
1
78
4
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
62
A
LYS
62
A
LYS
64
A
LYS
64
A
ASP
12
A
ASP
12
A
LEU
18
A
LEU
18
A
GLY
31
A
GLY
31
A
GLU
36
A
GLU
36
A
SER
41
A
SER
41
A
PRO
45
A
PRO
45
A
GLU
2
A
GLU
2
A
ARG
5
A
ARG
5
A
ALA
68
A
ALA
68
A
GLU
73
A
GLU
73
A
VAL
51
A
VAL
51
A
VAL
55
A
VAL
55
LYS 39 IS THE LIPOYLATION SITE WHERE LIPOIC ACID (6,8 THIOCTIC ACID) IS COVALENTLY ATTACHED VIA AN AMIDE LINKAGE TO THE LYSINE SIDE CHAIN.
Unknown
1
A
LYS
39
A
LYS
39
1
1_555
1
P 1