0.012881
0.007437
0.000000
0.000000
0.014874
0.000000
0.000000
0.000000
0.004244
0.00000
0.00000
0.00000
Shimomura, Y.
Kakuta, Y.
Fukuyama, K.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
77.633
77.633
235.614
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C21 H30 N7 O17 P3
745.421
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
S
P
N
237
N
O
N
238
N
O
N
239
N
O
N
240
N
C
N
241
R
C
N
242
N
O
N
243
R
C
N
244
N
O
N
245
R
C
N
246
N
O
N
247
R
C
Y
248
N
N
Y
249
N
C
Y
250
N
N
Y
251
N
C
Y
252
N
C
N
253
N
N
Y
254
N
N
Y
255
N
C
Y
256
N
N
Y
257
N
C
N
258
N
O
N
259
S
P
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
C
N
264
R
C
N
265
N
O
N
266
S
C
N
267
N
O
N
268
R
C
N
269
N
O
N
270
R
C
N
271
N
N
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
O
N
276
N
N
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
P
N
281
N
O
N
282
N
O
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
R
C
N
373
N
O
N
374
N
C
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
N
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
N
423
N
O
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
N
441
N
C
N
442
N
C
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
Y
247
N
sing
Y
248
N
sing
Y
249
N
doub
N
250
N
sing
Y
251
N
sing
Y
252
N
sing
Y
253
N
doub
N
254
N
sing
Y
255
N
doub
N
256
N
sing
N
257
N
sing
Y
258
N
sing
Y
259
N
doub
N
260
N
sing
Y
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
Y
414
N
doub
Y
415
N
sing
Y
416
N
sing
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
US
J.Bacteriol.
JOBAAY
0767
0021-9193
185
4211
4218
10.1128/JB.185.14.4211-4218.2003
12837796
Crystal Structures of the Quinone Oxidoreductase from Thermus thermophilus HB8 and Its Complex with NADPH: Implication for NADPH and Substrate Recognition
2003
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
58
1365
1367
10.1107/S090744490201003X
Overproduction, crystallization and preliminary X-ray diffraction analysis of a quinone oxidoreductase from Thermus thermophilus HB8
2002
10.2210/pdb1iyz/pdb
pdb_00001iyz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-05-29
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
BL41XU
SPring-8
1.000
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
32126.660
QUINONE OXIDOREDUCTASE
1.6.5.5
1
man
polymer
745.421
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
1
syn
non-polymer
18.015
water
36
nat
water
no
no
MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVEGRRYAALVPQGG
LAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP
EKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGKEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVL
GFWLTPLLREGALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL
MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVEGRRYAALVPQGG
LAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP
EKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGKEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVL
GFWLTPLLREGALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL
A
ttk003000390.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermus
Escherichia
Escherichia coli
sample
274
Thermus thermophilus
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PLASMID
pET-11a
1
3.31
62.56
VAPOR DIFFUSION, HANGING DROP
3.9
ammonium dihydrogen phosphate, pH 3.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
RIKEN Structural Genomics/Proteomics Initiative
RSGI
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-07-15
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
PDBJ
Y
PDBJ
2002-09-17
REL
REL
NDP
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
HOH
water
NDP
350
2
NDP
NDP
350
A
HOH
1
3
HOH
HOH
351
A
HOH
2
3
HOH
HOH
352
A
HOH
3
3
HOH
HOH
353
A
HOH
4
3
HOH
HOH
354
A
HOH
5
3
HOH
HOH
355
A
HOH
6
3
HOH
HOH
356
A
HOH
7
3
HOH
HOH
357
A
HOH
8
3
HOH
HOH
358
A
HOH
9
3
HOH
HOH
359
A
HOH
10
3
HOH
HOH
360
A
HOH
11
3
HOH
HOH
361
A
HOH
12
3
HOH
HOH
362
A
HOH
13
3
HOH
HOH
363
A
HOH
14
3
HOH
HOH
364
A
HOH
15
3
HOH
HOH
365
A
HOH
16
3
HOH
HOH
366
A
HOH
17
3
HOH
HOH
367
A
HOH
18
3
HOH
HOH
368
A
HOH
19
3
HOH
HOH
369
A
HOH
20
3
HOH
HOH
370
A
HOH
21
3
HOH
HOH
371
A
HOH
22
3
HOH
HOH
372
A
HOH
23
3
HOH
HOH
373
A
HOH
24
3
HOH
HOH
374
A
HOH
25
3
HOH
HOH
375
A
HOH
26
3
HOH
HOH
376
A
HOH
27
3
HOH
HOH
377
A
HOH
28
3
HOH
HOH
378
A
HOH
29
3
HOH
HOH
379
A
HOH
30
3
HOH
HOH
380
A
HOH
31
3
HOH
HOH
381
A
HOH
32
3
HOH
HOH
382
A
HOH
33
3
HOH
HOH
383
A
HOH
34
3
HOH
HOH
384
A
HOH
35
3
HOH
HOH
385
A
HOH
36
3
HOH
HOH
386
A
MET
1
n
1
MET
1
A
ALA
2
n
2
LYS
2
A
ALA
3
n
3
ALA
3
A
TRP
4
n
4
TRP
4
A
VAL
5
n
5
VAL
5
A
LEU
6
n
6
LEU
6
A
LYS
7
n
7
LYS
7
A
ARG
8
n
8
ARG
8
A
LEU
9
n
9
LEU
9
A
GLY
10
n
10
GLY
10
A
GLY
11
n
11
GLY
11
A
PRO
12
n
12
PRO
12
A
LEU
13
n
13
LEU
13
A
GLU
14
n
14
GLU
14
A
LEU
15
n
15
LEU
15
A
VAL
16
n
16
VAL
16
A
ASP
17
n
17
ASP
17
A
LEU
18
n
18
LEU
18
A
PRO
19
n
19
PRO
19
A
GLU
20
n
20
GLU
20
A
PRO
21
n
21
PRO
21
A
ALA
22
n
22
GLU
22
A
ALA
23
n
23
ALA
23
A
ALA
24
n
24
GLU
24
A
ALA
25
n
25
GLU
25
A
GLY
26
n
26
GLY
26
A
GLU
27
n
27
GLU
27
A
VAL
28
n
28
VAL
28
A
VAL
29
n
29
VAL
29
A
LEU
30
n
30
LEU
30
A
ARG
31
n
31
ARG
31
A
VAL
32
n
32
VAL
32
A
GLU
33
n
33
GLU
33
A
ALA
34
n
34
ALA
34
A
VAL
35
n
35
VAL
35
A
GLY
36
n
36
GLY
36
A
LEU
37
n
37
LEU
37
A
ASN
38
n
38
ASN
38
A
PHE
39
n
39
PHE
39
A
ALA
40
n
40
ALA
40
A
ASP
41
n
41
ASP
41
A
HIS
42
n
42
HIS
42
A
LEU
43
n
43
LEU
43
A
MET
44
n
44
MET
44
A
ARG
45
n
45
ARG
45
A
LEU
46
n
46
LEU
46
A
GLY
47
n
47
GLY
47
A
ALA
48
n
48
ALA
48
A
TYR
49
n
49
TYR
49
A
LEU
50
n
50
LEU
50
A
ALA
51
n
51
THR
51
A
ALA
52
n
52
ARG
52
A
LEU
53
n
53
LEU
53
A
HIS
54
n
54
HIS
54
A
PRO
55
n
55
PRO
55
A
PRO
56
n
56
PRO
56
A
PHE
57
n
57
PHE
57
A
ILE
58
n
58
ILE
58
A
PRO
59
n
59
PRO
59
A
GLY
60
n
60
GLY
60
A
MET
61
n
61
MET
61
A
GLU
62
n
62
GLU
62
A
VAL
63
n
63
VAL
63
A
VAL
64
n
64
VAL
64
A
GLY
65
n
65
GLY
65
A
VAL
66
n
66
VAL
66
A
VAL
67
n
67
VAL
67
A
ALA
68
n
68
GLU
68
A
GLY
69
n
69
GLY
69
A
ALA
70
n
70
ARG
70
A
ARG
71
n
71
ARG
71
A
TYR
72
n
72
TYR
72
A
ALA
73
n
73
ALA
73
A
ALA
74
n
74
ALA
74
A
LEU
75
n
75
LEU
75
A
VAL
76
n
76
VAL
76
A
PRO
77
n
77
PRO
77
A
GLN
78
n
78
GLN
78
A
GLY
79
n
79
GLY
79
A
GLY
80
n
80
GLY
80
A
LEU
81
n
81
LEU
81
A
ALA
82
n
82
ALA
82
A
GLU
83
n
83
GLU
83
A
ARG
84
n
84
ARG
84
A
VAL
85
n
85
VAL
85
A
ALA
86
n
86
ALA
86
A
VAL
87
n
87
VAL
87
A
PRO
88
n
88
PRO
88
A
ALA
89
n
89
LYS
89
A
GLY
90
n
90
GLY
90
A
ALA
91
n
91
ALA
91
A
LEU
92
n
92
LEU
92
A
LEU
93
n
93
LEU
93
A
PRO
94
n
94
PRO
94
A
LEU
95
n
95
LEU
95
A
PRO
96
n
96
PRO
96
A
GLU
97
n
97
GLU
97
A
GLY
98
n
98
GLY
98
A
LEU
99
n
99
LEU
99
A
SER
100
n
100
SER
100
A
PRO
101
n
101
PRO
101
A
GLU
102
n
102
GLU
102
A
GLU
103
n
103
GLU
103
A
ALA
104
n
104
ALA
104
A
ALA
105
n
105
ALA
105
A
ALA
106
n
106
ALA
106
A
PHE
107
n
107
PHE
107
A
PRO
108
n
108
PRO
108
A
VAL
109
n
109
VAL
109
A
SER
110
n
110
SER
110
A
PHE
111
n
111
PHE
111
A
LEU
112
n
112
LEU
112
A
THR
113
n
113
THR
113
A
ALA
114
n
114
ALA
114
A
TYR
115
n
115
TYR
115
A
LEU
116
n
116
LEU
116
A
ALA
117
n
117
ALA
117
A
LEU
118
n
118
LEU
118
A
ALA
119
n
119
LYS
119
A
ALA
120
n
120
ARG
120
A
ALA
121
n
121
ALA
121
A
GLN
122
n
122
GLN
122
A
ALA
123
n
123
ALA
123
A
ARG
124
n
124
ARG
124
A
PRO
125
n
125
PRO
125
A
GLY
126
n
126
GLY
126
A
GLU
127
n
127
GLU
127
A
LYS
128
n
128
LYS
128
A
VAL
129
n
129
VAL
129
A
LEU
130
n
130
LEU
130
A
VAL
131
n
131
VAL
131
A
GLN
132
n
132
GLN
132
A
ALA
133
n
133
ALA
133
A
ALA
134
n
134
ALA
134
A
ALA
135
n
135
ALA
135
A
GLY
136
n
136
GLY
136
A
ALA
137
n
137
ALA
137
A
LEU
138
n
138
LEU
138
A
GLY
139
n
139
GLY
139
A
THR
140
n
140
THR
140
A
ALA
141
n
141
ALA
141
A
ALA
142
n
142
ALA
142
A
VAL
143
n
143
VAL
143
A
GLN
144
n
144
GLN
144
A
VAL
145
n
145
VAL
145
A
ALA
146
n
146
ALA
146
A
ALA
147
n
147
ARG
147
A
ALA
148
n
148
ALA
148
A
MET
149
n
149
MET
149
A
GLY
150
n
150
GLY
150
A
LEU
151
n
151
LEU
151
A
ARG
152
n
152
ARG
152
A
VAL
153
n
153
VAL
153
A
LEU
154
n
154
LEU
154
A
ALA
155
n
155
ALA
155
A
ALA
156
n
156
ALA
156
A
ALA
157
n
157
ALA
157
A
SER
158
n
158
SER
158
A
ARG
159
n
159
ARG
159
A
PRO
160
n
160
PRO
160
A
GLU
161
n
161
GLU
161
A
LYS
162
n
162
LYS
162
A
LEU
163
n
163
LEU
163
A
ALA
164
n
164
ALA
164
A
LEU
165
n
165
LEU
165
A
PRO
166
n
166
PRO
166
A
LEU
167
n
167
LEU
167
A
ALA
168
n
168
ALA
168
A
LEU
169
n
169
LEU
169
A
GLY
170
n
170
GLY
170
A
ALA
171
n
171
ALA
171
A
GLU
172
n
172
GLU
172
A
GLU
173
n
173
GLU
173
A
ALA
174
n
174
ALA
174
A
ALA
175
n
175
ALA
175
A
THR
176
n
176
THR
176
A
TYR
177
n
177
TYR
177
A
ALA
178
n
178
ALA
178
A
ALA
179
n
179
GLU
179
A
VAL
180
n
180
VAL
180
A
PRO
181
n
181
PRO
181
A
ALA
182
n
182
GLU
182
A
ARG
183
n
183
ARG
183
A
ALA
184
n
184
ALA
184
A
ALA
185
n
185
LYS
185
A
ALA
186
n
186
ALA
186
A
TRP
187
n
187
TRP
187
A
GLY
188
n
188
GLY
188
A
GLY
189
n
189
GLY
189
A
LEU
190
n
190
LEU
190
A
ASP
191
n
191
ASP
191
A
LEU
192
n
192
LEU
192
A
VAL
193
n
193
VAL
193
A
LEU
194
n
194
LEU
194
A
GLU
195
n
195
GLU
195
A
VAL
196
n
196
VAL
196
A
ARG
197
n
197
ARG
197
A
GLY
198
n
198
GLY
198
A
ALA
199
n
199
LYS
199
A
ALA
200
n
200
GLU
200
A
VAL
201
n
201
VAL
201
A
ALA
202
n
202
GLU
202
A
ALA
203
n
203
GLU
203
A
SER
204
n
204
SER
204
A
LEU
205
n
205
LEU
205
A
GLY
206
n
206
GLY
206
A
LEU
207
n
207
LEU
207
A
LEU
208
n
208
LEU
208
A
ALA
209
n
209
ALA
209
A
ALA
210
n
210
HIS
210
A
GLY
211
n
211
GLY
211
A
GLY
212
n
212
GLY
212
A
ARG
213
n
213
ARG
213
A
LEU
214
n
214
LEU
214
A
VAL
215
n
215
VAL
215
A
TYR
216
n
216
TYR
216
A
ILE
217
n
217
ILE
217
A
GLY
218
n
218
GLY
218
A
ALA
219
n
219
ALA
219
A
ALA
220
n
220
ALA
220
A
GLU
221
n
221
GLU
221
A
n
222
222
A
n
223
223
A
n
224
224
A
ALA
225
n
225
ALA
225
A
PRO
226
n
226
PRO
226
A
ALA
227
n
227
ILE
227
A
PRO
228
n
228
PRO
228
A
PRO
229
n
229
PRO
229
A
ALA
230
n
230
LEU
230
A
ALA
231
n
231
ARG
231
A
LEU
232
n
232
LEU
232
A
MET
233
n
233
MET
233
A
ALA
234
n
234
ARG
234
A
ARG
235
n
235
ARG
235
A
ASN
236
n
236
ASN
236
A
LEU
237
n
237
LEU
237
A
ALA
238
n
238
ALA
238
A
VAL
239
n
239
VAL
239
A
LEU
240
n
240
LEU
240
A
GLY
241
n
241
GLY
241
A
PHE
242
n
242
PHE
242
A
TRP
243
n
243
TRP
243
A
LEU
244
n
244
LEU
244
A
THR
245
n
245
THR
245
A
PRO
246
n
246
PRO
246
A
LEU
247
n
247
LEU
247
A
LEU
248
n
248
LEU
248
A
ALA
249
n
249
ARG
249
A
GLU
250
n
250
GLU
250
A
GLY
251
n
251
GLY
251
A
ALA
252
n
252
ALA
252
A
LEU
253
n
253
LEU
253
A
VAL
254
n
254
VAL
254
A
ALA
255
n
255
GLU
255
A
ALA
256
n
256
GLU
256
A
ALA
257
n
257
ALA
257
A
LEU
258
n
258
LEU
258
A
GLY
259
n
259
GLY
259
A
PHE
260
n
260
PHE
260
A
LEU
261
n
261
LEU
261
A
LEU
262
n
262
LEU
262
A
PRO
263
n
263
PRO
263
A
ARG
264
n
264
ARG
264
A
LEU
265
n
265
LEU
265
A
GLY
266
n
266
GLY
266
A
ARG
267
n
267
ARG
267
A
GLU
268
n
268
GLU
268
A
LEU
269
n
269
LEU
269
A
ARG
270
n
270
ARG
270
A
PRO
271
n
271
PRO
271
A
VAL
272
n
272
VAL
272
A
VAL
273
n
273
VAL
273
A
GLY
274
n
274
GLY
274
A
PRO
275
n
275
PRO
275
A
VAL
276
n
276
VAL
276
A
PHE
277
n
277
PHE
277
A
PRO
278
n
278
PRO
278
A
PHE
279
n
279
PHE
279
A
ALA
280
n
280
ALA
280
A
GLU
281
n
281
GLU
281
A
ALA
282
n
282
ALA
282
A
GLU
283
n
283
GLU
283
A
ALA
284
n
284
ALA
284
A
ALA
285
n
285
ALA
285
A
PHE
286
n
286
PHE
286
A
ARG
287
n
287
ARG
287
A
ALA
288
n
288
ALA
288
A
LEU
289
n
289
LEU
289
A
LEU
290
n
290
LEU
290
A
ASP
291
n
291
ASP
291
A
ARG
292
n
292
ARG
292
A
GLY
293
n
293
GLY
293
A
HIS
294
n
294
HIS
294
A
THR
295
n
295
THR
295
A
GLY
296
n
296
GLY
296
A
LYS
297
n
297
LYS
297
A
VAL
298
n
298
VAL
298
A
VAL
299
n
299
VAL
299
A
VAL
300
n
300
VAL
300
A
ARG
301
n
301
ARG
301
A
LEU
302
n
302
LEU
302
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_544
x,x-y-1,-z-5/6
crystal symmetry operation
38.8165000000
-67.2321501720
-196.3450000000
A
N
ALA
3
A
N
ALA
3
A
O
VAL
16
A
O
VAL
16
A
O
LEU
93
A
O
LEU
93
A
N
ALA
73
A
N
ALA
73
A
O
ARG
70
A
O
ARG
70
A
N
VAL
67
A
N
VAL
67
A
O
GLU
62
A
O
GLU
62
A
N
GLY
36
A
N
GLY
36
A
N
VAL
28
A
N
VAL
28
A
O
VAL
87
A
O
VAL
87
A
O
LEU
93
A
O
LEU
93
A
N
ALA
73
A
N
ALA
73
A
O
ARG
70
A
O
ARG
70
A
N
VAL
67
A
N
VAL
67
A
O
GLU
62
A
O
GLU
62
A
N
GLY
36
A
N
GLY
36
A
N
VAL
35
A
N
VAL
35
A
O
VAL
300
A
O
VAL
300
A
O
ARG
301
A
O
ARG
301
A
N
PHE
277
A
N
PHE
277
A
O
ALA
175
A
O
ALA
175
A
N
ALA
155
A
N
ALA
155
A
O
ARG
152
A
O
ARG
152
A
N
VAL
129
A
N
VAL
129
A
N
LEU
130
A
N
LEU
130
A
O
LEU
192
A
O
LEU
192
A
N
VAL
193
A
N
VAL
193
A
O
VAL
215
A
O
VAL
215
A
N
TYR
216
A
N
TYR
216
A
O
LEU
240
A
O
LEU
240
1
A
CG
LYS
2
A
CG
LYS
2
1
Y
1
A
CD
LYS
2
A
CD
LYS
2
1
Y
1
A
CE
LYS
2
A
CE
LYS
2
1
Y
1
A
NZ
LYS
2
A
NZ
LYS
2
1
Y
1
A
CG
GLU
22
A
CG
GLU
22
1
Y
1
A
CD
GLU
22
A
CD
GLU
22
1
Y
1
A
OE1
GLU
22
A
OE1
GLU
22
1
Y
1
A
OE2
GLU
22
A
OE2
GLU
22
1
Y
1
A
CG
GLU
24
A
CG
GLU
24
1
Y
1
A
CD
GLU
24
A
CD
GLU
24
1
Y
1
A
OE1
GLU
24
A
OE1
GLU
24
1
Y
1
A
OE2
GLU
24
A
OE2
GLU
24
1
Y
1
A
CG
GLU
25
A
CG
GLU
25
1
Y
1
A
CD
GLU
25
A
CD
GLU
25
1
Y
1
A
OE1
GLU
25
A
OE1
GLU
25
1
Y
1
A
OE2
GLU
25
A
OE2
GLU
25
1
Y
1
A
OG1
THR
51
A
OG1
THR
51
1
Y
1
A
CG2
THR
51
A
CG2
THR
51
1
Y
1
A
CG
ARG
52
A
CG
ARG
52
1
Y
1
A
CD
ARG
52
A
CD
ARG
52
1
Y
1
A
NE
ARG
52
A
NE
ARG
52
1
Y
1
A
CZ
ARG
52
A
CZ
ARG
52
1
Y
1
A
NH1
ARG
52
A
NH1
ARG
52
1
Y
1
A
NH2
ARG
52
A
NH2
ARG
52
1
Y
1
A
CG
GLU
68
A
CG
GLU
68
1
Y
1
A
CD
GLU
68
A
CD
GLU
68
1
Y
1
A
OE1
GLU
68
A
OE1
GLU
68
1
Y
1
A
OE2
GLU
68
A
OE2
GLU
68
1
Y
1
A
CG
ARG
70
A
CG
ARG
70
1
Y
1
A
CD
ARG
70
A
CD
ARG
70
1
Y
1
A
NE
ARG
70
A
NE
ARG
70
1
Y
1
A
CZ
ARG
70
A
CZ
ARG
70
1
Y
1
A
NH1
ARG
70
A
NH1
ARG
70
1
Y
1
A
NH2
ARG
70
A
NH2
ARG
70
1
Y
1
A
CG
LYS
89
A
CG
LYS
89
1
Y
1
A
CD
LYS
89
A
CD
LYS
89
1
Y
1
A
CE
LYS
89
A
CE
LYS
89
1
Y
1
A
NZ
LYS
89
A
NZ
LYS
89
1
Y
1
A
CG
LYS
119
A
CG
LYS
119
1
Y
1
A
CD
LYS
119
A
CD
LYS
119
1
Y
1
A
CE
LYS
119
A
CE
LYS
119
1
Y
1
A
NZ
LYS
119
A
NZ
LYS
119
1
Y
1
A
CG
ARG
120
A
CG
ARG
120
1
Y
1
A
CD
ARG
120
A
CD
ARG
120
1
Y
1
A
NE
ARG
120
A
NE
ARG
120
1
Y
1
A
CZ
ARG
120
A
CZ
ARG
120
1
Y
1
A
NH1
ARG
120
A
NH1
ARG
120
1
Y
1
A
NH2
ARG
120
A
NH2
ARG
120
1
Y
1
A
CG
ARG
147
A
CG
ARG
147
1
Y
1
A
CD
ARG
147
A
CD
ARG
147
1
Y
1
A
NE
ARG
147
A
NE
ARG
147
1
Y
1
A
CZ
ARG
147
A
CZ
ARG
147
1
Y
1
A
NH1
ARG
147
A
NH1
ARG
147
1
Y
1
A
NH2
ARG
147
A
NH2
ARG
147
1
Y
1
A
CG
GLU
179
A
CG
GLU
179
1
Y
1
A
CD
GLU
179
A
CD
GLU
179
1
Y
1
A
OE1
GLU
179
A
OE1
GLU
179
1
Y
1
A
OE2
GLU
179
A
OE2
GLU
179
1
Y
1
A
CG
GLU
182
A
CG
GLU
182
1
Y
1
A
CD
GLU
182
A
CD
GLU
182
1
Y
1
A
OE1
GLU
182
A
OE1
GLU
182
1
Y
1
A
OE2
GLU
182
A
OE2
GLU
182
1
Y
1
A
CG
LYS
185
A
CG
LYS
185
1
Y
1
A
CD
LYS
185
A
CD
LYS
185
1
Y
1
A
CE
LYS
185
A
CE
LYS
185
1
Y
1
A
NZ
LYS
185
A
NZ
LYS
185
1
Y
1
A
CG
LYS
199
A
CG
LYS
199
1
Y
1
A
CD
LYS
199
A
CD
LYS
199
1
Y
1
A
CE
LYS
199
A
CE
LYS
199
1
Y
1
A
NZ
LYS
199
A
NZ
LYS
199
1
Y
1
A
CG
GLU
200
A
CG
GLU
200
1
Y
1
A
CD
GLU
200
A
CD
GLU
200
1
Y
1
A
OE1
GLU
200
A
OE1
GLU
200
1
Y
1
A
OE2
GLU
200
A
OE2
GLU
200
1
Y
1
A
CG
GLU
202
A
CG
GLU
202
1
Y
1
A
CD
GLU
202
A
CD
GLU
202
1
Y
1
A
OE1
GLU
202
A
OE1
GLU
202
1
Y
1
A
OE2
GLU
202
A
OE2
GLU
202
1
Y
1
A
CG
GLU
203
A
CG
GLU
203
1
Y
1
A
CD
GLU
203
A
CD
GLU
203
1
Y
1
A
OE1
GLU
203
A
OE1
GLU
203
1
Y
1
A
OE2
GLU
203
A
OE2
GLU
203
1
Y
1
A
CG
HIS
210
A
CG
HIS
210
1
Y
1
A
ND1
HIS
210
A
ND1
HIS
210
1
Y
1
A
CD2
HIS
210
A
CD2
HIS
210
1
Y
1
A
CE1
HIS
210
A
CE1
HIS
210
1
Y
1
A
NE2
HIS
210
A
NE2
HIS
210
1
Y
1
A
CG1
ILE
227
A
CG1
ILE
227
1
Y
1
A
CG2
ILE
227
A
CG2
ILE
227
1
Y
1
A
CD1
ILE
227
A
CD1
ILE
227
1
Y
1
A
CG
LEU
230
A
CG
LEU
230
1
Y
1
A
CD1
LEU
230
A
CD1
LEU
230
1
Y
1
A
CD2
LEU
230
A
CD2
LEU
230
1
Y
1
A
CG
ARG
231
A
CG
ARG
231
1
Y
1
A
CD
ARG
231
A
CD
ARG
231
1
Y
1
A
NE
ARG
231
A
NE
ARG
231
1
Y
1
A
CZ
ARG
231
A
CZ
ARG
231
1
Y
1
A
NH1
ARG
231
A
NH1
ARG
231
1
Y
1
A
NH2
ARG
231
A
NH2
ARG
231
1
Y
1
A
CG
ARG
234
A
CG
ARG
234
1
Y
1
A
CD
ARG
234
A
CD
ARG
234
1
Y
1
A
NE
ARG
234
A
NE
ARG
234
1
Y
1
A
CZ
ARG
234
A
CZ
ARG
234
1
Y
1
A
NH1
ARG
234
A
NH1
ARG
234
1
Y
1
A
NH2
ARG
234
A
NH2
ARG
234
1
Y
1
A
CG
ARG
249
A
CG
ARG
249
1
Y
1
A
CD
ARG
249
A
CD
ARG
249
1
Y
1
A
NE
ARG
249
A
NE
ARG
249
1
Y
1
A
CZ
ARG
249
A
CZ
ARG
249
1
Y
1
A
NH1
ARG
249
A
NH1
ARG
249
1
Y
1
A
NH2
ARG
249
A
NH2
ARG
249
1
Y
1
A
CG
GLU
255
A
CG
GLU
255
1
Y
1
A
CD
GLU
255
A
CD
GLU
255
1
Y
1
A
OE1
GLU
255
A
OE1
GLU
255
1
Y
1
A
OE2
GLU
255
A
OE2
GLU
255
1
Y
1
A
CG
GLU
256
A
CG
GLU
256
1
Y
1
A
CD
GLU
256
A
CD
GLU
256
1
Y
1
A
OE1
GLU
256
A
OE1
GLU
256
1
Y
1
A
OE2
GLU
256
A
OE2
GLU
256
1
Y
1
A
GLY
222
A
GLY
222
1
Y
1
A
GLU
223
A
GLU
223
1
Y
1
A
VAL
224
A
VAL
224
1
Y
1
A
GLU
68
37.95
53.00
1
A
PHE
107
-93.88
-62.34
1
A
PRO
108
-35.68
-78.02
1
A
PRO
226
-54.50
171.38
1
A
PRO
228
-49.40
95.83
1
A
PRO
229
-62.97
95.38
1
A
LEU
230
174.78
-40.02
1
A
ARG
267
-109.35
-93.68
1
A
ARG
292
-68.25
4.70
PROTEIN_REP.PARAM
PROTEIN.TOP
NDP_XPLOR.PARAM
NDP_XPLOR.TOP
WATER.PARAM
WATER.TOP
35.1
4.61
8.33
0.00
4.61
0.00
-9.22
0.256
0.008
0.219
0.2235
0.2235
2.80
44.31
1109
10881
10881
10.2
98.3
RANDOM
532329.40
0.00
1
RESTRAINED
THROUGHOUT
0.0
FOURIER SYNTHESIS
FLAT MODEL
43.738
0.37952
0.40
0.32
5.00
0.51
0.31
2.80
44.31
36
2211
48
0
2127
0.009
1.8
24.3
3.71
1.14
1.50
1.95
2.00
1.82
2.00
2.74
2.50
0.397
0.031
0.283
2.98
169
1529
6
10.0
94.9
27.5
2.8
50.0
1IYZ
278044
278044
0.0
0.0
1
99.9
2.8
2.9
100.0
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
Crystal Structures of the Quinone Oxidoreductase from Thermus thermophilus HB8 and Its Complex with NADPH
1
N
N
2
N
N
3
N
N
A
ASN
38
A
ASN
38
HELX_P
A
LEU
46
A
LEU
46
1
1
9
A
GLY
90
A
GLY
90
HELX_P
A
LEU
92
A
LEU
92
5
2
3
A
SER
100
A
SER
100
HELX_P
A
ALA
105
A
ALA
105
1
3
6
A
PHE
107
A
PHE
107
HELX_P
A
ALA
121
A
ALA
121
1
4
15
A
GLY
136
A
GLY
136
HELX_P
A
MET
149
A
MET
149
1
5
14
A
ARG
159
A
ARG
159
HELX_P
A
LYS
162
A
LYS
162
5
6
4
A
LEU
163
A
LEU
163
HELX_P
A
GLY
170
A
GLY
170
1
7
8
A
GLU
179
A
GLU
179
HELX_P
A
GLY
188
A
GLY
188
1
8
10
A
GLU
200
A
GLU
200
HELX_P
A
GLY
206
A
GLY
206
1
9
7
A
LEU
230
A
LEU
230
HELX_P
A
ARG
235
A
ARG
235
1
10
6
A
TRP
243
A
TRP
243
HELX_P
A
ARG
249
A
ARG
249
1
11
7
A
GLU
250
A
GLU
250
HELX_P
A
LEU
262
A
LEU
262
1
12
13
A
GLU
281
A
GLU
281
HELX_P
A
ASP
291
A
ASP
291
1
13
11
OXIDOREDUCTASE
PROTEIN-NADPH COMPLEX, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, OXIDOREDUCTASE
A
PRO
55
A
PRO
55
1
A
PRO
56
A
PRO
56
-0.19
Q8L3C8_THETH
UNP
1
1
Q8L3C8
MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVEGRRYAALVPQGG
LAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP
EKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGKEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVL
GFWLTPLLREGALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL
1
302
1IYZ
1
302
Q8L3C8
A
1
1
302
2
5
6
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
LYS
2
A
LYS
2
A
LEU
6
A
LEU
6
A
LEU
13
A
LEU
13
A
ASP
17
A
ASP
17
A
LEU
93
A
LEU
93
A
PRO
94
A
PRO
94
A
ARG
70
A
ARG
70
A
LEU
75
A
LEU
75
A
GLU
62
A
GLU
62
A
VAL
67
A
VAL
67
A
GLU
27
A
GLU
27
A
GLY
36
A
GLY
36
A
ARG
84
A
ARG
84
A
PRO
88
A
PRO
88
A
LEU
93
A
LEU
93
A
PRO
94
A
PRO
94
A
ARG
70
A
ARG
70
A
LEU
75
A
LEU
75
A
GLU
62
A
GLU
62
A
VAL
67
A
VAL
67
A
GLU
27
A
GLU
27
A
GLY
36
A
GLY
36
A
LYS
297
A
LYS
297
A
ARG
301
A
ARG
301
A
VAL
273
A
VAL
273
A
PRO
278
A
PRO
278
A
GLU
173
A
GLU
173
A
THR
176
A
THR
176
A
ARG
152
A
ARG
152
A
ALA
157
A
ALA
157
A
LYS
128
A
LYS
128
A
VAL
131
A
VAL
131
A
LEU
190
A
LEU
190
A
GLU
195
A
GLU
195
A
LEU
208
A
LEU
208
A
TYR
216
A
TYR
216
A
ALA
238
A
ALA
238
A
GLY
241
A
GLY
241
BINDING SITE FOR RESIDUE NDP A 350
A
NDP
350
Software
20
A
PHE
39
A
PHE
39
20
1_555
A
THR
113
A
THR
113
20
1_555
A
ALA
133
A
ALA
133
20
1_555
A
GLY
136
A
GLY
136
20
1_555
A
ALA
137
A
ALA
137
20
1_555
A
ALA
157
A
ALA
157
20
1_555
A
SER
158
A
SER
158
20
1_555
A
LYS
162
A
LYS
162
20
1_555
A
TYR
177
A
TYR
177
20
1_555
A
VAL
196
A
VAL
196
20
1_555
A
ILE
217
A
ILE
217
20
1_555
A
ALA
220
A
ALA
220
20
1_555
A
GLU
221
A
GLU
221
20
1_555
A
PHE
242
A
PHE
242
20
1_555
A
TRP
243
A
TRP
243
20
1_555
A
LEU
244
A
LEU
244
20
1_555
A
ARG
292
A
ARG
292
20
1_555
A
HIS
294
A
HIS
294
20
1_555
A
GLY
296
A
GLY
296
20
1_555
A
HOH
381
C
HOH
20
1_555
178
P 61 2 2