0.009374
0.005412
0.000000
0.000000
0.010824
0.000000
0.000000
0.000000
0.008281
0.00000
0.00000
0.00000
Ose, T.
Watanabe, K.
Mie, T.
Honma, M.
Watanabe, H.
Yao, M.
Oikawa, H.
Tanaka, I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
106.678
106.678
120.755
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H4 O3
88.062
PYRUVIC ACID
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
MG
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
N
306
N
O
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
R
C
N
320
N
O
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
N
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
C
N
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
UK
Nature
NATUAS
0006
0028-0836
422
185
189
10.1038/nature01454
12634789
Insight into a natural Diels-Alder reaction from the structure of macrophomate synthase.
2003
10.2210/pdb1izc/pdb
pdb_00001izc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2000-11-25
ADSC QUANTUM 4
silicon
MAD
M
x-ray
1
1.0
1.0
BL-18B
Photon Factory
1.0
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-18B
36271.891
macrophomate synthase intermolecular Diels-Alderase
I108V
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
88.062
PYRUVIC ACID
1
syn
non-polymer
18.015
water
360
nat
water
macrophomate synthase
no
no
MAKSYSEQPELHAKAPYRSAMLTYPGNLRQALKDAMADPSKTLMGVAHGIPSTFVTKVLAATKPDFVWIDVEHGMFNRLE
LHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKEMYYGPIGRRSFSPWTFSPGIAD
ASLFPNDPYNVATSNNHVCIIPQIESVKGVENVDAIAAMPEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVEAMTKFS
TAAQRNGVPIFGGALSVDMVPSLIEQGYRAIAVQFDVWGLSRLVHGSLAQARASAKQFAGQGKAATDGTTDETVDGAAEE
VANGVSKVKLDEAGDEDKA
MAKSYSEQPELHAKAPYRSAMLTYPGNLRQALKDAMADPSKTLMGVAHGIPSTFVTKVLAATKPDFVWIDVEHGMFNRLE
LHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKEMYYGPIGRRSFSPWTFSPGIAD
ASLFPNDPYNVATSNNHVCIIPQIESVKGVENVDAIAAMPEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVEAMTKFS
TAAQRNGVPIFGGALSVDMVPSLIEQGYRAIAVQFDVWGLSRLVHGSLAQARASAKQFAGQGKAATDGTTDETVDGAAEE
VANGVSKVKLDEAGDEDKA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Macrophoma
Escherichia
Escherichia coli
sample
108330
Macrophoma commelinae
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PLASMID
pET30B
1
2.73
54.99
VAPOR DIFFUSION, HANGING DROP
6.5
PIPES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
atom_site
chem_comp_atom
chem_comp_bond
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Database references
Derived calculations
Atomic model
Data collection
Derived calculations
1
0
2003-04-01
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-11-10
2
0
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_atom_site.auth_atom_id
_atom_site.label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_struct_conn.ptnr2_label_atom_id
PDBJ
Y
PDBJ
2002-10-01
REL
REL
MG
MAGNESIUM ION
PYR
PYRUVIC ACID
HOH
water
MG
1001
2
MG
MG
1001
A
PYR
2001
3
PYR
PYR
2001
A
HOH
1
4
HOH
HOH
2002
A
HOH
2
4
HOH
HOH
2003
A
HOH
3
4
HOH
HOH
2004
A
HOH
4
4
HOH
HOH
2005
A
HOH
5
4
HOH
HOH
2006
A
HOH
6
4
HOH
HOH
2007
A
HOH
7
4
HOH
HOH
2008
A
HOH
8
4
HOH
HOH
2009
A
HOH
9
4
HOH
HOH
2010
A
HOH
10
4
HOH
HOH
2011
A
HOH
11
4
HOH
HOH
2012
A
HOH
12
4
HOH
HOH
2013
A
HOH
13
4
HOH
HOH
2014
A
HOH
14
4
HOH
HOH
2015
A
HOH
15
4
HOH
HOH
2016
A
HOH
16
4
HOH
HOH
2017
A
HOH
17
4
HOH
HOH
2018
A
HOH
18
4
HOH
HOH
2019
A
HOH
19
4
HOH
HOH
2020
A
HOH
20
4
HOH
HOH
2021
A
HOH
21
4
HOH
HOH
2022
A
HOH
22
4
HOH
HOH
2023
A
HOH
23
4
HOH
HOH
2024
A
HOH
24
4
HOH
HOH
2025
A
HOH
25
4
HOH
HOH
2026
A
HOH
26
4
HOH
HOH
2027
A
HOH
27
4
HOH
HOH
2028
A
HOH
28
4
HOH
HOH
2029
A
HOH
29
4
HOH
HOH
2030
A
HOH
30
4
HOH
HOH
2031
A
HOH
31
4
HOH
HOH
2032
A
HOH
32
4
HOH
HOH
2033
A
HOH
33
4
HOH
HOH
2034
A
HOH
34
4
HOH
HOH
2035
A
HOH
35
4
HOH
HOH
2036
A
HOH
36
4
HOH
HOH
2037
A
HOH
37
4
HOH
HOH
2038
A
HOH
38
4
HOH
HOH
2039
A
HOH
39
4
HOH
HOH
2040
A
HOH
40
4
HOH
HOH
2041
A
HOH
41
4
HOH
HOH
2042
A
HOH
42
4
HOH
HOH
2043
A
HOH
43
4
HOH
HOH
2044
A
HOH
44
4
HOH
HOH
2045
A
HOH
45
4
HOH
HOH
2046
A
HOH
46
4
HOH
HOH
2047
A
HOH
47
4
HOH
HOH
2048
A
HOH
48
4
HOH
HOH
2049
A
HOH
49
4
HOH
HOH
2050
A
HOH
50
4
HOH
HOH
2051
A
HOH
51
4
HOH
HOH
2052
A
HOH
52
4
HOH
HOH
2053
A
HOH
53
4
HOH
HOH
2054
A
HOH
54
4
HOH
HOH
2055
A
HOH
55
4
HOH
HOH
2056
A
HOH
56
4
HOH
HOH
2057
A
HOH
57
4
HOH
HOH
2058
A
HOH
58
4
HOH
HOH
2059
A
HOH
59
4
HOH
HOH
2060
A
HOH
60
4
HOH
HOH
2061
A
HOH
61
4
HOH
HOH
2062
A
HOH
62
4
HOH
HOH
2063
A
HOH
63
4
HOH
HOH
2064
A
HOH
64
4
HOH
HOH
2065
A
HOH
65
4
HOH
HOH
2066
A
HOH
66
4
HOH
HOH
2067
A
HOH
67
4
HOH
HOH
2068
A
HOH
68
4
HOH
HOH
2069
A
HOH
69
4
HOH
HOH
2070
A
HOH
70
4
HOH
HOH
2071
A
HOH
71
4
HOH
HOH
2072
A
HOH
72
4
HOH
HOH
2073
A
HOH
73
4
HOH
HOH
2074
A
HOH
74
4
HOH
HOH
2075
A
HOH
75
4
HOH
HOH
2076
A
HOH
76
4
HOH
HOH
2077
A
HOH
77
4
HOH
HOH
2078
A
HOH
78
4
HOH
HOH
2079
A
HOH
79
4
HOH
HOH
2080
A
HOH
80
4
HOH
HOH
2081
A
HOH
81
4
HOH
HOH
2082
A
HOH
82
4
HOH
HOH
2083
A
HOH
83
4
HOH
HOH
2084
A
HOH
84
4
HOH
HOH
2085
A
HOH
85
4
HOH
HOH
2086
A
HOH
86
4
HOH
HOH
2087
A
HOH
87
4
HOH
HOH
2088
A
HOH
88
4
HOH
HOH
2089
A
HOH
89
4
HOH
HOH
2090
A
HOH
90
4
HOH
HOH
2091
A
HOH
91
4
HOH
HOH
2092
A
HOH
92
4
HOH
HOH
2093
A
HOH
93
4
HOH
HOH
2094
A
HOH
94
4
HOH
HOH
2095
A
HOH
95
4
HOH
HOH
2096
A
HOH
96
4
HOH
HOH
2097
A
HOH
97
4
HOH
HOH
2098
A
HOH
98
4
HOH
HOH
2099
A
HOH
99
4
HOH
HOH
2100
A
HOH
100
4
HOH
HOH
2101
A
HOH
101
4
HOH
HOH
2102
A
HOH
102
4
HOH
HOH
2103
A
HOH
103
4
HOH
HOH
2104
A
HOH
104
4
HOH
HOH
2105
A
HOH
105
4
HOH
HOH
2106
A
HOH
106
4
HOH
HOH
2107
A
HOH
107
4
HOH
HOH
2108
A
HOH
108
4
HOH
HOH
2109
A
HOH
109
4
HOH
HOH
2110
A
HOH
110
4
HOH
HOH
2111
A
HOH
111
4
HOH
HOH
2112
A
HOH
112
4
HOH
HOH
2113
A
HOH
113
4
HOH
HOH
2114
A
HOH
114
4
HOH
HOH
2115
A
HOH
115
4
HOH
HOH
2116
A
HOH
116
4
HOH
HOH
2117
A
HOH
117
4
HOH
HOH
2118
A
HOH
118
4
HOH
HOH
2119
A
HOH
119
4
HOH
HOH
2120
A
HOH
120
4
HOH
HOH
2121
A
HOH
121
4
HOH
HOH
2122
A
HOH
122
4
HOH
HOH
2123
A
HOH
123
4
HOH
HOH
2124
A
HOH
124
4
HOH
HOH
2125
A
HOH
125
4
HOH
HOH
2126
A
HOH
126
4
HOH
HOH
2127
A
HOH
127
4
HOH
HOH
2128
A
HOH
128
4
HOH
HOH
2129
A
HOH
129
4
HOH
HOH
2130
A
HOH
130
4
HOH
HOH
2131
A
HOH
131
4
HOH
HOH
2132
A
HOH
132
4
HOH
HOH
2133
A
HOH
133
4
HOH
HOH
2134
A
HOH
134
4
HOH
HOH
2135
A
HOH
135
4
HOH
HOH
2136
A
HOH
136
4
HOH
HOH
2137
A
HOH
137
4
HOH
HOH
2138
A
HOH
138
4
HOH
HOH
2139
A
HOH
139
4
HOH
HOH
2140
A
HOH
140
4
HOH
HOH
2141
A
HOH
141
4
HOH
HOH
2142
A
HOH
142
4
HOH
HOH
2143
A
HOH
143
4
HOH
HOH
2144
A
HOH
144
4
HOH
HOH
2145
A
HOH
145
4
HOH
HOH
2146
A
HOH
146
4
HOH
HOH
2147
A
HOH
147
4
HOH
HOH
2148
A
HOH
148
4
HOH
HOH
2149
A
HOH
149
4
HOH
HOH
2150
A
HOH
150
4
HOH
HOH
2151
A
HOH
151
4
HOH
HOH
2152
A
HOH
152
4
HOH
HOH
2153
A
HOH
153
4
HOH
HOH
2154
A
HOH
154
4
HOH
HOH
2155
A
HOH
155
4
HOH
HOH
2156
A
HOH
156
4
HOH
HOH
2157
A
HOH
157
4
HOH
HOH
2158
A
HOH
158
4
HOH
HOH
2159
A
HOH
159
4
HOH
HOH
2160
A
HOH
160
4
HOH
HOH
2161
A
HOH
161
4
HOH
HOH
2162
A
HOH
162
4
HOH
HOH
2163
A
HOH
163
4
HOH
HOH
2164
A
HOH
164
4
HOH
HOH
2165
A
HOH
165
4
HOH
HOH
2166
A
HOH
166
4
HOH
HOH
2167
A
HOH
167
4
HOH
HOH
2168
A
HOH
168
4
HOH
HOH
2169
A
HOH
169
4
HOH
HOH
2170
A
HOH
170
4
HOH
HOH
2171
A
HOH
171
4
HOH
HOH
2172
A
HOH
172
4
HOH
HOH
2173
A
HOH
173
4
HOH
HOH
2174
A
HOH
174
4
HOH
HOH
2175
A
HOH
175
4
HOH
HOH
2176
A
HOH
176
4
HOH
HOH
2177
A
HOH
177
4
HOH
HOH
2178
A
HOH
178
4
HOH
HOH
2179
A
HOH
179
4
HOH
HOH
2180
A
HOH
180
4
HOH
HOH
2181
A
HOH
181
4
HOH
HOH
2182
A
HOH
182
4
HOH
HOH
2183
A
HOH
183
4
HOH
HOH
2184
A
HOH
184
4
HOH
HOH
2185
A
HOH
185
4
HOH
HOH
2186
A
HOH
186
4
HOH
HOH
2187
A
HOH
187
4
HOH
HOH
2188
A
HOH
188
4
HOH
HOH
2189
A
HOH
189
4
HOH
HOH
2190
A
HOH
190
4
HOH
HOH
2191
A
HOH
191
4
HOH
HOH
2192
A
HOH
192
4
HOH
HOH
2193
A
HOH
193
4
HOH
HOH
2194
A
HOH
194
4
HOH
HOH
2195
A
HOH
195
4
HOH
HOH
2196
A
HOH
196
4
HOH
HOH
2197
A
HOH
197
4
HOH
HOH
2198
A
HOH
198
4
HOH
HOH
2199
A
HOH
199
4
HOH
HOH
2200
A
HOH
200
4
HOH
HOH
2201
A
HOH
201
4
HOH
HOH
2202
A
HOH
202
4
HOH
HOH
2203
A
HOH
203
4
HOH
HOH
2204
A
HOH
204
4
HOH
HOH
2205
A
HOH
205
4
HOH
HOH
2206
A
HOH
206
4
HOH
HOH
2207
A
HOH
207
4
HOH
HOH
2208
A
HOH
208
4
HOH
HOH
2209
A
HOH
209
4
HOH
HOH
2210
A
HOH
210
4
HOH
HOH
2211
A
HOH
211
4
HOH
HOH
2212
A
HOH
212
4
HOH
HOH
2213
A
HOH
213
4
HOH
HOH
2214
A
HOH
214
4
HOH
HOH
2215
A
HOH
215
4
HOH
HOH
2216
A
HOH
216
4
HOH
HOH
2217
A
HOH
217
4
HOH
HOH
2218
A
HOH
218
4
HOH
HOH
2219
A
HOH
219
4
HOH
HOH
2220
A
HOH
220
4
HOH
HOH
2221
A
HOH
221
4
HOH
HOH
2222
A
HOH
222
4
HOH
HOH
2223
A
HOH
223
4
HOH
HOH
2224
A
HOH
224
4
HOH
HOH
2225
A
HOH
225
4
HOH
HOH
2226
A
HOH
226
4
HOH
HOH
2227
A
HOH
227
4
HOH
HOH
2228
A
HOH
228
4
HOH
HOH
2229
A
HOH
229
4
HOH
HOH
2230
A
HOH
230
4
HOH
HOH
2231
A
HOH
231
4
HOH
HOH
2232
A
HOH
232
4
HOH
HOH
2233
A
HOH
233
4
HOH
HOH
2234
A
HOH
234
4
HOH
HOH
2235
A
HOH
235
4
HOH
HOH
2236
A
HOH
236
4
HOH
HOH
2237
A
HOH
237
4
HOH
HOH
2238
A
HOH
238
4
HOH
HOH
2239
A
HOH
239
4
HOH
HOH
2240
A
HOH
240
4
HOH
HOH
2241
A
HOH
241
4
HOH
HOH
2242
A
HOH
242
4
HOH
HOH
2243
A
HOH
243
4
HOH
HOH
2244
A
HOH
244
4
HOH
HOH
2245
A
HOH
245
4
HOH
HOH
2246
A
HOH
246
4
HOH
HOH
2247
A
HOH
247
4
HOH
HOH
2248
A
HOH
248
4
HOH
HOH
2249
A
HOH
249
4
HOH
HOH
2250
A
HOH
250
4
HOH
HOH
2251
A
HOH
251
4
HOH
HOH
2252
A
HOH
252
4
HOH
HOH
2253
A
HOH
253
4
HOH
HOH
2254
A
HOH
254
4
HOH
HOH
2255
A
HOH
255
4
HOH
HOH
2256
A
HOH
256
4
HOH
HOH
2257
A
HOH
257
4
HOH
HOH
2258
A
HOH
258
4
HOH
HOH
2259
A
HOH
259
4
HOH
HOH
2260
A
HOH
260
4
HOH
HOH
2261
A
HOH
261
4
HOH
HOH
2262
A
HOH
262
4
HOH
HOH
2263
A
HOH
263
4
HOH
HOH
2264
A
HOH
264
4
HOH
HOH
2265
A
HOH
265
4
HOH
HOH
2266
A
HOH
266
4
HOH
HOH
2267
A
HOH
267
4
HOH
HOH
2268
A
HOH
268
4
HOH
HOH
2269
A
HOH
269
4
HOH
HOH
2270
A
HOH
270
4
HOH
HOH
2271
A
HOH
271
4
HOH
HOH
2272
A
HOH
272
4
HOH
HOH
2273
A
HOH
273
4
HOH
HOH
2274
A
HOH
274
4
HOH
HOH
2275
A
HOH
275
4
HOH
HOH
2276
A
HOH
276
4
HOH
HOH
2277
A
HOH
277
4
HOH
HOH
2278
A
HOH
278
4
HOH
HOH
2279
A
HOH
279
4
HOH
HOH
2280
A
HOH
280
4
HOH
HOH
2281
A
HOH
281
4
HOH
HOH
2282
A
HOH
282
4
HOH
HOH
2283
A
HOH
283
4
HOH
HOH
2284
A
HOH
284
4
HOH
HOH
2285
A
HOH
285
4
HOH
HOH
2286
A
HOH
286
4
HOH
HOH
2287
A
HOH
287
4
HOH
HOH
2288
A
HOH
288
4
HOH
HOH
2289
A
HOH
289
4
HOH
HOH
2290
A
HOH
290
4
HOH
HOH
2291
A
HOH
291
4
HOH
HOH
2292
A
HOH
292
4
HOH
HOH
2293
A
HOH
293
4
HOH
HOH
2294
A
HOH
294
4
HOH
HOH
2295
A
HOH
295
4
HOH
HOH
2296
A
HOH
296
4
HOH
HOH
2297
A
HOH
297
4
HOH
HOH
2298
A
HOH
298
4
HOH
HOH
2299
A
HOH
299
4
HOH
HOH
2300
A
HOH
300
4
HOH
HOH
2301
A
HOH
301
4
HOH
HOH
2302
A
HOH
302
4
HOH
HOH
2303
A
HOH
303
4
HOH
HOH
2304
A
HOH
304
4
HOH
HOH
2305
A
HOH
305
4
HOH
HOH
2306
A
HOH
306
4
HOH
HOH
2307
A
HOH
307
4
HOH
HOH
2308
A
HOH
308
4
HOH
HOH
2309
A
HOH
309
4
HOH
HOH
2310
A
HOH
310
4
HOH
HOH
2311
A
HOH
311
4
HOH
HOH
2312
A
HOH
312
4
HOH
HOH
2313
A
HOH
313
4
HOH
HOH
2314
A
HOH
314
4
HOH
HOH
2315
A
HOH
315
4
HOH
HOH
2316
A
HOH
316
4
HOH
HOH
2317
A
HOH
317
4
HOH
HOH
2318
A
HOH
318
4
HOH
HOH
2319
A
HOH
319
4
HOH
HOH
2320
A
HOH
320
4
HOH
HOH
2321
A
HOH
321
4
HOH
HOH
2322
A
HOH
322
4
HOH
HOH
2323
A
HOH
323
4
HOH
HOH
2324
A
HOH
324
4
HOH
HOH
2325
A
HOH
325
4
HOH
HOH
2326
A
HOH
326
4
HOH
HOH
2327
A
HOH
327
4
HOH
HOH
2328
A
HOH
328
4
HOH
HOH
2329
A
HOH
329
4
HOH
HOH
2330
A
HOH
330
4
HOH
HOH
2331
A
HOH
331
4
HOH
HOH
2332
A
HOH
332
4
HOH
HOH
2333
A
HOH
333
4
HOH
HOH
2334
A
HOH
334
4
HOH
HOH
2335
A
HOH
335
4
HOH
HOH
2336
A
HOH
336
4
HOH
HOH
2337
A
HOH
337
4
HOH
HOH
2338
A
HOH
338
4
HOH
HOH
2339
A
HOH
339
4
HOH
HOH
2340
A
HOH
340
4
HOH
HOH
2341
A
HOH
341
4
HOH
HOH
2342
A
HOH
342
4
HOH
HOH
2343
A
HOH
343
4
HOH
HOH
2344
A
HOH
344
4
HOH
HOH
2345
A
HOH
345
4
HOH
HOH
2346
A
HOH
346
4
HOH
HOH
2347
A
HOH
347
4
HOH
HOH
2348
A
HOH
348
4
HOH
HOH
2349
A
HOH
349
4
HOH
HOH
2350
A
HOH
350
4
HOH
HOH
2351
A
HOH
351
4
HOH
HOH
2352
A
HOH
352
4
HOH
HOH
2353
A
HOH
353
4
HOH
HOH
2354
A
HOH
354
4
HOH
HOH
2355
A
HOH
355
4
HOH
HOH
2356
A
HOH
356
4
HOH
HOH
2357
A
HOH
357
4
HOH
HOH
2358
A
HOH
358
4
HOH
HOH
2359
A
HOH
359
4
HOH
HOH
2360
A
HOH
360
4
HOH
HOH
2361
A
n
1
1
A
ALA
2
n
2
ALA
2
A
LYS
3
n
3
LYS
3
A
SER
4
n
4
SER
4
A
TYR
5
n
5
TYR
5
A
SER
6
n
6
SER
6
A
GLU
7
n
7
GLU
7
A
GLN
8
n
8
GLN
8
A
PRO
9
n
9
PRO
9
A
GLU
10
n
10
GLU
10
A
LEU
11
n
11
LEU
11
A
HIS
12
n
12
HIS
12
A
ALA
13
n
13
ALA
13
A
LYS
14
n
14
LYS
14
A
ALA
15
n
15
ALA
15
A
PRO
16
n
16
PRO
16
A
TYR
17
n
17
TYR
17
A
ARG
18
n
18
ARG
18
A
SER
19
n
19
SER
19
A
ALA
20
n
20
ALA
20
A
MET
21
n
21
MET
21
A
LEU
22
n
22
LEU
22
A
THR
23
n
23
THR
23
A
TYR
24
n
24
TYR
24
A
PRO
25
n
25
PRO
25
A
GLY
26
n
26
GLY
26
A
ASN
27
n
27
ASN
27
A
LEU
28
n
28
LEU
28
A
ARG
29
n
29
ARG
29
A
GLN
30
n
30
GLN
30
A
ALA
31
n
31
ALA
31
A
LEU
32
n
32
LEU
32
A
LYS
33
n
33
LYS
33
A
ASP
34
n
34
ASP
34
A
ALA
35
n
35
ALA
35
A
MET
36
n
36
MET
36
A
ALA
37
n
37
ALA
37
A
ASP
38
n
38
ASP
38
A
PRO
39
n
39
PRO
39
A
SER
40
n
40
SER
40
A
LYS
41
n
41
LYS
41
A
THR
42
n
42
THR
42
A
LEU
43
n
43
LEU
43
A
MET
44
n
44
MET
44
A
GLY
45
n
45
GLY
45
A
VAL
46
n
46
VAL
46
A
ALA
47
n
47
ALA
47
A
HIS
48
n
48
HIS
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
PRO
51
n
51
PRO
51
A
SER
52
n
52
SER
52
A
THR
53
n
53
THR
53
A
PHE
54
n
54
PHE
54
A
VAL
55
n
55
VAL
55
A
THR
56
n
56
THR
56
A
LYS
57
n
57
LYS
57
A
VAL
58
n
58
VAL
58
A
LEU
59
n
59
LEU
59
A
ALA
60
n
60
ALA
60
A
ALA
61
n
61
ALA
61
A
THR
62
n
62
THR
62
A
LYS
63
n
63
LYS
63
A
PRO
64
n
64
PRO
64
A
ASP
65
n
65
ASP
65
A
PHE
66
n
66
PHE
66
A
VAL
67
n
67
VAL
67
A
TRP
68
n
68
TRP
68
A
ILE
69
n
69
ILE
69
A
ASP
70
n
70
ASP
70
A
VAL
71
n
71
VAL
71
A
GLU
72
n
72
GLU
72
A
HIS
73
n
73
HIS
73
A
GLY
74
n
74
GLY
74
A
MET
75
n
75
MET
75
A
PHE
76
n
76
PHE
76
A
ASN
77
n
77
ASN
77
A
ARG
78
n
78
ARG
78
A
LEU
79
n
79
LEU
79
A
GLU
80
n
80
GLU
80
A
LEU
81
n
81
LEU
81
A
HIS
82
n
82
HIS
82
A
ASP
83
n
83
ASP
83
A
ALA
84
n
84
ALA
84
A
ILE
85
n
85
ILE
85
A
HIS
86
n
86
HIS
86
A
ALA
87
n
87
ALA
87
A
ALA
88
n
88
ALA
88
A
GLN
89
n
89
GLN
89
A
HIS
90
n
90
HIS
90
A
HIS
91
n
91
HIS
91
A
SER
92
n
92
SER
92
A
GLU
93
n
93
GLU
93
A
GLY
94
n
94
GLY
94
A
ARG
95
n
95
ARG
95
A
SER
96
n
96
SER
96
A
LEU
97
n
97
LEU
97
A
VAL
98
n
98
VAL
98
A
ILE
99
n
99
ILE
99
A
VAL
100
n
100
VAL
100
A
ARG
101
n
101
ARG
101
A
VAL
102
n
102
VAL
102
A
PRO
103
n
103
PRO
103
A
LYS
104
n
104
LYS
104
A
HIS
105
n
105
HIS
105
A
ASP
106
n
106
ASP
106
A
GLU
107
n
107
GLU
107
A
VAL
108
n
108
VAL
108
A
SER
109
n
109
SER
109
A
LEU
110
n
110
LEU
110
A
SER
111
n
111
SER
111
A
THR
112
n
112
THR
112
A
ALA
113
n
113
ALA
113
A
LEU
114
n
114
LEU
114
A
ASP
115
n
115
ASP
115
A
ALA
116
n
116
ALA
116
A
GLY
117
n
117
GLY
117
A
ALA
118
n
118
ALA
118
A
ALA
119
n
119
ALA
119
A
GLY
120
n
120
GLY
120
A
ILE
121
n
121
ILE
121
A
VAL
122
n
122
VAL
122
A
ILE
123
n
123
ILE
123
A
PRO
124
n
124
PRO
124
A
HIS
125
n
125
HIS
125
A
VAL
126
n
126
VAL
126
A
GLU
127
n
127
GLU
127
A
THR
128
n
128
THR
128
A
VAL
129
n
129
VAL
129
A
GLU
130
n
130
GLU
130
A
GLU
131
n
131
GLU
131
A
VAL
132
n
132
VAL
132
A
ARG
133
n
133
ARG
133
A
GLU
134
n
134
GLU
134
A
PHE
135
n
135
PHE
135
A
VAL
136
n
136
VAL
136
A
LYS
137
n
137
LYS
137
A
GLU
138
n
138
GLU
138
A
MET
139
n
139
MET
139
A
TYR
140
n
140
TYR
140
A
TYR
141
n
141
TYR
141
A
GLY
142
n
142
GLY
142
A
PRO
143
n
143
PRO
143
A
ILE
144
n
144
ILE
144
A
GLY
145
n
145
GLY
145
A
ARG
146
n
146
ARG
146
A
ARG
147
n
147
ARG
147
A
SER
148
n
148
SER
148
A
PHE
149
n
149
PHE
149
A
SER
150
n
150
SER
150
A
PRO
151
n
151
PRO
151
A
TRP
152
n
152
TRP
152
A
THR
153
n
153
THR
153
A
PHE
154
n
154
PHE
154
A
SER
155
n
155
SER
155
A
PRO
156
n
156
PRO
156
A
GLY
157
n
157
GLY
157
A
ILE
158
n
158
ILE
158
A
ALA
159
n
159
ALA
159
A
ASP
160
n
160
ASP
160
A
ALA
161
n
161
ALA
161
A
SER
162
n
162
SER
162
A
LEU
163
n
163
LEU
163
A
PHE
164
n
164
PHE
164
A
PRO
165
n
165
PRO
165
A
ASN
166
n
166
ASN
166
A
ASP
167
n
167
ASP
167
A
PRO
168
n
168
PRO
168
A
TYR
169
n
169
TYR
169
A
ASN
170
n
170
ASN
170
A
VAL
171
n
171
VAL
171
A
ALA
172
n
172
ALA
172
A
THR
173
n
173
THR
173
A
SER
174
n
174
SER
174
A
ASN
175
n
175
ASN
175
A
ASN
176
n
176
ASN
176
A
HIS
177
n
177
HIS
177
A
VAL
178
n
178
VAL
178
A
CYS
179
n
179
CYS
179
A
ILE
180
n
180
ILE
180
A
ILE
181
n
181
ILE
181
A
PRO
182
n
182
PRO
182
A
GLN
183
n
183
GLN
183
A
ILE
184
n
184
ILE
184
A
GLU
185
n
185
GLU
185
A
SER
186
n
186
SER
186
A
VAL
187
n
187
VAL
187
A
LYS
188
n
188
LYS
188
A
GLY
189
n
189
GLY
189
A
VAL
190
n
190
VAL
190
A
GLU
191
n
191
GLU
191
A
ASN
192
n
192
ASN
192
A
VAL
193
n
193
VAL
193
A
ASP
194
n
194
ASP
194
A
ALA
195
n
195
ALA
195
A
ILE
196
n
196
ILE
196
A
ALA
197
n
197
ALA
197
A
ALA
198
n
198
ALA
198
A
MET
199
n
199
MET
199
A
PRO
200
n
200
PRO
200
A
GLU
201
n
201
GLU
201
A
ILE
202
n
202
ILE
202
A
HIS
203
n
203
HIS
203
A
GLY
204
n
204
GLY
204
A
LEU
205
n
205
LEU
205
A
MET
206
n
206
MET
206
A
PHE
207
n
207
PHE
207
A
GLY
208
n
208
GLY
208
A
PRO
209
n
209
PRO
209
A
GLY
210
n
210
GLY
210
A
ASP
211
n
211
ASP
211
A
TYR
212
n
212
TYR
212
A
MET
213
n
213
MET
213
A
ILE
214
n
214
ILE
214
A
ASP
215
n
215
ASP
215
A
ALA
216
n
216
ALA
216
A
GLY
217
n
217
GLY
217
A
LEU
218
n
218
LEU
218
A
ASP
219
n
219
ASP
219
A
LEU
220
n
220
LEU
220
A
ASN
221
n
221
ASN
221
A
GLY
222
n
222
GLY
222
A
ALA
223
n
223
ALA
223
A
LEU
224
n
224
LEU
224
A
SER
225
n
225
SER
225
A
GLY
226
n
226
GLY
226
A
VAL
227
n
227
VAL
227
A
PRO
228
n
228
PRO
228
A
HIS
229
n
229
HIS
229
A
PRO
230
n
230
PRO
230
A
THR
231
n
231
THR
231
A
PHE
232
n
232
PHE
232
A
VAL
233
n
233
VAL
233
A
GLU
234
n
234
GLU
234
A
ALA
235
n
235
ALA
235
A
MET
236
n
236
MET
236
A
THR
237
n
237
THR
237
A
LYS
238
n
238
LYS
238
A
PHE
239
n
239
PHE
239
A
SER
240
n
240
SER
240
A
THR
241
n
241
THR
241
A
ALA
242
n
242
ALA
242
A
ALA
243
n
243
ALA
243
A
GLN
244
n
244
GLN
244
A
ARG
245
n
245
ARG
245
A
ASN
246
n
246
ASN
246
A
GLY
247
n
247
GLY
247
A
VAL
248
n
248
VAL
248
A
PRO
249
n
249
PRO
249
A
ILE
250
n
250
ILE
250
A
PHE
251
n
251
PHE
251
A
GLY
252
n
252
GLY
252
A
GLY
253
n
253
GLY
253
A
ALA
254
n
254
ALA
254
A
LEU
255
n
255
LEU
255
A
SER
256
n
256
SER
256
A
VAL
257
n
257
VAL
257
A
ASP
258
n
258
ASP
258
A
MET
259
n
259
MET
259
A
VAL
260
n
260
VAL
260
A
PRO
261
n
261
PRO
261
A
SER
262
n
262
SER
262
A
LEU
263
n
263
LEU
263
A
ILE
264
n
264
ILE
264
A
GLU
265
n
265
GLU
265
A
GLN
266
n
266
GLN
266
A
GLY
267
n
267
GLY
267
A
TYR
268
n
268
TYR
268
A
ARG
269
n
269
ARG
269
A
ALA
270
n
270
ALA
270
A
ILE
271
n
271
ILE
271
A
ALA
272
n
272
ALA
272
A
VAL
273
n
273
VAL
273
A
GLN
274
n
274
GLN
274
A
PHE
275
n
275
PHE
275
A
ASP
276
n
276
ASP
276
A
VAL
277
n
277
VAL
277
A
TRP
278
n
278
TRP
278
A
GLY
279
n
279
GLY
279
A
LEU
280
n
280
LEU
280
A
SER
281
n
281
SER
281
A
ARG
282
n
282
ARG
282
A
LEU
283
n
283
LEU
283
A
VAL
284
n
284
VAL
284
A
HIS
285
n
285
HIS
285
A
GLY
286
n
286
GLY
286
A
SER
287
n
287
SER
287
A
LEU
288
n
288
LEU
288
A
ALA
289
n
289
ALA
289
A
GLN
290
n
290
GLN
290
A
ALA
291
n
291
ALA
291
A
ARG
292
n
292
ARG
292
A
ALA
293
n
293
ALA
293
A
SER
294
n
294
SER
294
A
ALA
295
n
295
ALA
295
A
LYS
296
n
296
LYS
296
A
GLN
297
n
297
GLN
297
A
PHE
298
n
298
PHE
298
A
ALA
299
n
299
ALA
299
A
GLY
300
n
300
GLY
300
A
n
301
301
A
n
302
302
A
n
303
303
A
n
304
304
A
n
305
305
A
n
306
306
A
n
307
307
A
n
308
308
A
n
309
309
A
n
310
310
A
n
311
311
A
n
312
312
A
n
313
313
A
n
314
314
A
n
315
315
A
n
316
316
A
n
317
317
A
n
318
318
A
n
319
319
A
n
320
320
A
n
321
321
A
n
322
322
A
n
323
323
A
n
324
324
A
n
325
325
A
n
326
326
A
n
327
327
A
n
328
328
A
n
329
329
A
n
330
330
A
n
331
331
A
n
332
332
A
n
333
333
A
n
334
334
A
n
335
335
A
n
336
336
A
n
337
337
A
n
338
338
A
n
339
339
A
author_and_software_defined_assembly
PISA,PQS
6
hexameric
34820
-252
59040
A
GLU
185
A
OE1
GLU
185
1_555
A
MG
1001
B
MG
MG
1_555
A
ASP
211
A
OD2
ASP
211
1_555
93.2
A
GLU
185
A
OE1
GLU
185
1_555
A
MG
1001
B
MG
MG
1_555
A
PYR
2001
C
O3
PYR
1_555
95.6
A
ASP
211
A
OD2
ASP
211
1_555
A
MG
1001
B
MG
MG
1_555
A
PYR
2001
C
O3
PYR
1_555
163.3
A
GLU
185
A
OE1
GLU
185
1_555
A
MG
1001
B
MG
MG
1_555
A
PYR
2001
C
O
PYR
1_555
89.6
A
ASP
211
A
OD2
ASP
211
1_555
A
MG
1001
B
MG
MG
1_555
A
PYR
2001
C
O
PYR
1_555
86.9
A
PYR
2001
C
O3
PYR
1_555
A
MG
1001
B
MG
MG
1_555
A
PYR
2001
C
O
PYR
1_555
79.0
A
GLU
185
A
OE1
GLU
185
1_555
A
MG
1001
B
MG
MG
1_555
A
HOH
2036
D
O
HOH
1_555
88.8
A
ASP
211
A
OD2
ASP
211
1_555
A
MG
1001
B
MG
MG
1_555
A
HOH
2036
D
O
HOH
1_555
99.7
A
PYR
2001
C
O3
PYR
1_555
A
MG
1001
B
MG
MG
1_555
A
HOH
2036
D
O
HOH
1_555
94.7
A
PYR
2001
C
O
PYR
1_555
A
MG
1001
B
MG
MG
1_555
A
HOH
2036
D
O
HOH
1_555
173.3
A
GLU
185
A
OE1
GLU
185
1_555
A
MG
1001
B
MG
MG
1_555
A
HOH
2245
D
O
HOH
1_555
175.9
A
ASP
211
A
OD2
ASP
211
1_555
A
MG
1001
B
MG
MG
1_555
A
HOH
2245
D
O
HOH
1_555
86.7
A
PYR
2001
C
O3
PYR
1_555
A
MG
1001
B
MG
MG
1_555
A
HOH
2245
D
O
HOH
1_555
83.5
A
PYR
2001
C
O
PYR
1_555
A
MG
1001
B
MG
MG
1_555
A
HOH
2245
D
O
HOH
1_555
86.3
A
HOH
2036
D
O
HOH
1_555
A
MG
1001
B
MG
MG
1_555
A
HOH
2245
D
O
HOH
1_555
95.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-y+1,x-y,z
crystal symmetry operation
106.6780000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_665
-x+y+1,-x+1,z
crystal symmetry operation
53.3390000000
92.3858580249
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
53.3390000000
92.3858580249
60.3775000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
11_655
-x+y+1,y,-z+1/2
crystal symmetry operation
106.6780000000
0.0000000000
60.3775000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_555
x,x-y,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
60.3775000000
A
N
HIS
48
A
N
HIS
48
A
O
TRP
68
A
O
TRP
68
A
N
ILE
69
A
N
ILE
69
A
O
ILE
99
A
O
ILE
99
A
N
VAL
100
A
N
VAL
100
A
O
GLY
120
A
O
GLY
120
A
N
ILE
121
A
N
ILE
121
A
O
ILE
181
A
O
ILE
181
A
N
ILE
184
A
N
ILE
184
A
O
MET
206
A
O
MET
206
A
N
LEU
205
A
N
LEU
205
A
O
PHE
251
A
O
PHE
251
A
N
ILE
250
A
N
ILE
250
A
O
ARG
269
A
O
ARG
269
A
O
ILE
271
A
O
ILE
271
A
N
LEU
43
A
N
LEU
43
1
A
MET
1
A
MET
1
1
Y
1
A
GLN
301
A
GLN
301
1
Y
1
A
GLY
302
A
GLY
302
1
Y
1
A
LYS
303
A
LYS
303
1
Y
1
A
ALA
304
A
ALA
304
1
Y
1
A
ALA
305
A
ALA
305
1
Y
1
A
THR
306
A
THR
306
1
Y
1
A
ASP
307
A
ASP
307
1
Y
1
A
GLY
308
A
GLY
308
1
Y
1
A
THR
309
A
THR
309
1
Y
1
A
THR
310
A
THR
310
1
Y
1
A
ASP
311
A
ASP
311
1
Y
1
A
GLU
312
A
GLU
312
1
Y
1
A
THR
313
A
THR
313
1
Y
1
A
VAL
314
A
VAL
314
1
Y
1
A
ASP
315
A
ASP
315
1
Y
1
A
GLY
316
A
GLY
316
1
Y
1
A
ALA
317
A
ALA
317
1
Y
1
A
ALA
318
A
ALA
318
1
Y
1
A
GLU
319
A
GLU
319
1
Y
1
A
GLU
320
A
GLU
320
1
Y
1
A
VAL
321
A
VAL
321
1
Y
1
A
ALA
322
A
ALA
322
1
Y
1
A
ASN
323
A
ASN
323
1
Y
1
A
GLY
324
A
GLY
324
1
Y
1
A
VAL
325
A
VAL
325
1
Y
1
A
SER
326
A
SER
326
1
Y
1
A
LYS
327
A
LYS
327
1
Y
1
A
VAL
328
A
VAL
328
1
Y
1
A
LYS
329
A
LYS
329
1
Y
1
A
LEU
330
A
LEU
330
1
Y
1
A
ASP
331
A
ASP
331
1
Y
1
A
GLU
332
A
GLU
332
1
Y
1
A
ALA
333
A
ALA
333
1
Y
1
A
GLY
334
A
GLY
334
1
Y
1
A
ASP
335
A
ASP
335
1
Y
1
A
GLU
336
A
GLU
336
1
Y
1
A
ASP
337
A
ASP
337
1
Y
1
A
LYS
338
A
LYS
338
1
Y
1
A
ALA
339
A
ALA
339
1
Y
1
A
A
O
O
HOH
HOH
2358
2358
2.06
1_555
9_766
1
A
LYS
3
-141.12
19.84
1
A
MET
75
-79.12
47.35
1
A
ILE
158
-126.15
-51.28
1
A
ASP
160
-150.64
24.57
1
A
ASN
166
38.04
54.18
1
A
GLU
185
-151.90
35.70
1
A
ASP
219
-64.79
93.17
1
A
VAL
227
55.63
102.07
19.48
-1.330
-0.244
0.000
-1.330
0.000
2.661
0.2031
0.1757
0.1777
0.1777
1.7
20
4121
45083
41102
91.2
RANDOM
1
isotropic
0
MAD
Engh & Huber
0.20
0.17
5.0
0.13
0.10
1.7
20
360
2637
7
0
2270
0.007643
1.37231
22.978
0.92035
0.2752
0.236
1.76
245
2350
23.099
1.7
20
1IZC
41139
2.0
2.0
0.081
0.075
1
6.5
6.5
91.3
0.315
1.7
1.79
2.5
3901
0.281
1
4.6
61.0
data reduction
MOSFLM
data scaling
SCALA
phasing
SHARP
refinement
CNS
data scaling
CCP4
(SCALA)
Crystal Structure Analysis of Macrophomate synthase
1
N
N
2
N
N
3
N
N
4
N
N
A
SER
4
A
SER
4
HELX_P
A
HIS
12
A
HIS
12
5
1
9
A
ASN
27
A
ASN
27
HELX_P
A
ASP
38
A
ASP
38
1
2
12
A
PRO
39
A
PRO
39
HELX_P
A
THR
42
A
THR
42
5
3
4
A
SER
52
A
SER
52
HELX_P
A
THR
62
A
THR
62
1
4
11
A
ASN
77
A
ASN
77
HELX_P
A
SER
92
A
SER
92
1
5
16
A
ASP
106
A
ASP
106
HELX_P
A
GLY
117
A
GLY
117
1
6
12
A
THR
128
A
THR
128
HELX_P
A
TYR
140
A
TYR
140
1
7
13
A
ASN
170
A
ASN
170
HELX_P
A
VAL
178
A
VAL
178
1
8
9
A
SER
186
A
SER
186
HELX_P
A
ASN
192
A
ASN
192
1
9
7
A
ASN
192
A
ASN
192
HELX_P
A
ALA
198
A
ALA
198
1
10
7
A
GLY
208
A
GLY
208
HELX_P
A
ALA
216
A
ALA
216
1
11
9
A
HIS
229
A
HIS
229
HELX_P
A
ASN
246
A
ASN
246
1
12
18
A
SER
256
A
SER
256
HELX_P
A
ASP
258
A
ASP
258
5
13
3
A
MET
259
A
MET
259
HELX_P
A
GLN
266
A
GLN
266
1
14
8
A
ASP
276
A
ASP
276
HELX_P
A
LYS
296
A
LYS
296
1
15
21
A
GLN
297
A
GLN
297
HELX_P
A
ALA
299
A
ALA
299
5
16
3
metalc
2.083
A
GLU
185
A
OE1
GLU
185
1_555
A
MG
1001
B
MG
MG
1_555
metalc
2.125
A
ASP
211
A
OD2
ASP
211
1_555
A
MG
1001
B
MG
MG
1_555
metalc
2.057
A
MG
1001
B
MG
MG
1_555
A
PYR
2001
C
O3
PYR
1_555
metalc
2.170
A
MG
1001
B
MG
MG
1_555
A
PYR
2001
C
O
PYR
1_555
metalc
2.190
A
MG
1001
B
MG
MG
1_555
A
HOH
2036
D
O
HOH
1_555
metalc
2.270
A
MG
1001
B
MG
MG
1_555
A
HOH
2245
D
O
HOH
1_555
LYASE
TIM-BARREL, PYRUVATE MG(II) COMPLEX, LYASE
A
GLY
142
A
GLY
142
1
A
PRO
143
A
PRO
143
0.32
Q9UVD4_9ASCO
UNP
1
1
Q9UVD4
MAKSYSEQPELHAKAPYRSAMLTYPGNLRQALKDAMADPSKTLMGVAHGIPSTFVTKVLAATKPDFVWIDVEHGMFNRLE
LHDAIHAAQHHSEGRSLVIVRVPKHDEISLSTALDAGAAGIVIPHVETVEEVREFVKEMYYGPIGRRSFSPWTFSPGIAD
ASLFPNDPYNVATSNNHVCIIPQIESVKGVENVDAIAAMPEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVEAMTKFS
TAAQRNGVPIFGGALSVDMVPSLIEQGYRAIAVQFDVWGLSRLVHGSLAQARASAKQFAGQGKAATDGTTDETVDGAAEE
VANGVSKVKLDEAGDEDKA
1
339
1IZC
1
339
Q9UVD4
A
1
1
339
1
ILE
engineered mutation
VAL
108
1IZC
A
Q9UVD4
UNP
108
108
9
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
LEU
43
A
LEU
43
A
HIS
48
A
HIS
48
A
PHE
66
A
PHE
66
A
ASP
70
A
ASP
70
A
LEU
97
A
LEU
97
A
ARG
101
A
ARG
101
A
GLY
120
A
GLY
120
A
ILE
123
A
ILE
123
A
CYS
179
A
CYS
179
A
ILE
184
A
ILE
184
A
LEU
205
A
LEU
205
A
PHE
207
A
PHE
207
A
ILE
250
A
ILE
250
A
GLY
253
A
GLY
253
A
TYR
268
A
TYR
268
A
PHE
275
A
PHE
275
A
LEU
43
A
LEU
43
A
HIS
48
A
HIS
48
BINDING SITE FOR RESIDUE MG A 1001
A
MG
1001
Software
5
BINDING SITE FOR RESIDUE PYR A 2001
A
PYR
2001
Software
11
A
GLU
185
A
GLU
185
5
1_555
A
ASP
211
A
ASP
211
5
1_555
A
PYR
2001
C
PYR
5
1_555
A
HOH
2036
D
HOH
5
1_555
A
HOH
2245
D
HOH
5
1_555
A
ARG
101
A
ARG
101
11
1_555
A
GLN
183
A
GLN
183
11
1_555
A
GLU
185
A
GLU
185
11
1_555
A
GLY
208
A
GLY
208
11
1_555
A
PRO
209
A
PRO
209
11
1_555
A
GLY
210
A
GLY
210
11
1_555
A
ASP
211
A
ASP
211
11
1_555
A
MG
1001
B
MG
11
1_555
A
HOH
2068
D
HOH
11
2_655
A
HOH
2245
D
HOH
11
1_555
A
HOH
2271
D
HOH
11
1_555
182
P 63 2 2