0.009366 0.000000 0.005475 0.000000 0.025889 0.000000 0.000000 0.000000 0.014712 0.00000 0.00000 0.00000 Kamitori, S. Ohtaki, A. Ino, H. Takeuchi, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 120.31 90.00 106.767 38.627 78.732 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C5 H10 O2 102.132 ISOVALERIC ACID non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C8 H17 N O3 175.225 STATINE peptide-like C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N C N 170 N C N 171 N C N 172 N C N 173 N C N 174 N O N 175 N O N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C N 191 N C N 192 N C N 193 N C N 194 N O N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N N N 209 S C N 210 N C N 211 N O N 212 N C N 213 N C N 214 N C N 215 N C N 216 N N N 217 N O N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 S C N 234 S C N 235 S C N 236 S C N 237 R C N 238 N C N 239 N O N 240 N O N 241 N O N 242 N O N 243 N O N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N N N 258 S C N 259 N C N 260 N O N 261 N C Y 262 N C Y 263 N C Y 264 N C Y 265 N C Y 266 N C Y 267 N C N 268 N O N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C N 285 N C N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N N N 298 S C N 299 N C N 300 N O N 301 N C N 302 N O N 303 N O N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N C N 315 N C N 316 N C N 317 S C N 318 N O N 319 N C N 320 N C N 321 N O N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 R C N 345 N O N 346 N C N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N N Y 366 N C Y 367 N C Y 368 N C Y 369 N C Y 370 N C N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N N N 385 S C N 386 N C N 387 N O N 388 N C Y 389 N C Y 390 N C Y 391 N C Y 392 N C Y 393 N C Y 394 N C N 395 N O N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N N N 409 S C N 410 N C N 411 N O N 412 N C N 413 N C N 414 N C N 415 N O N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing Y 256 N doub Y 257 N sing Y 258 N sing N 259 N sing Y 260 N doub N 261 N sing Y 262 N doub N 263 N sing Y 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing Y 353 N doub Y 354 N sing Y 355 N sing N 356 N sing Y 357 N doub Y 358 N sing Y 359 N sing N 360 N sing Y 361 N sing Y 362 N doub N 363 N sing Y 364 N doub N 365 N sing Y 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing Y 381 N doub Y 382 N sing Y 383 N sing N 384 N sing Y 385 N doub N 386 N sing Y 387 N doub N 388 N sing Y 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 326 1503 1511 10.1016/S0022-2836(03)00078-0 12595261 Crystal structures of Aspergillus oryzae aspartic proteinase and its complex with an inhibitor pepstatin at 1.9A resolution. 2003 10.2210/pdb1ize/pdb pdb_00001ize 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 IMAGE PLATE 2002-06-03 RIGAKU RAXIS IIC graphite SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU300 33801.902 aspartic proteinase RESIDUES 1-323 1 nat polymer 685.891 Pepstatin 1 syn polymer 180.156 alpha-D-mannopyranose 1 man non-polymer 18.015 water 107 nat water aspartic proteinase II-1 no no AATGSVTTNPTSNDEEYITQVTVGDDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSAQKIDGATWSISYGDGSS ASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVKSSLSEPIFAVALKHN APGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDSSSDSITGIADTGTTLLLLDDSIVDAYYEQVNGASYD SSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQTFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFA AQA AATGSVTTNPTSNDEEYITQVTVGDDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSAQKIDGATWSISYGDGSS ASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVKSSLSEPIFAVALKHN APGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDSSSDSITGIADTGTTLLLLDDSIVDAYYEQVNGASYD SSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQTFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFA AQA A polypeptide(L) no yes (IVA)VV(STA)A(STA) XVVXAX B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Aspergillus sample 5062 Aspergillus oryzae 3 1.96 36.70 VAPOR DIFFUSION, HANGING DROP 5.0 PEG4000, ammonium acetate, sodium acetate trihydrate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 software chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 repository Initial release Carbohydrate remediation repository Remediation Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Refinement description Data collection Derived calculations Structure summary Data collection Database references Structure summary 1 0 2003-03-04 1 1 2008-04-27 1 2 2011-07-13 1 3 2013-02-27 1 4 2017-10-04 1 5 2020-07-29 1 6 2023-12-27 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession DManpa a-D-mannopyranose a-D-Manp Man 1IZD contains crystal structure of the same protein complexed with MAN PDBJ Y PDBJ 2002-10-02 REL REL MAN alpha-D-mannopyranose HOH water 285516 Streptomyces argenteolus subsp. toyonakensis sample Enzyme inhibitor Pepstatin Oligopeptide MAN 1001 3 MAN MAN 1001 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2065 4 HOH HOH 2065 A HOH 2066 4 HOH HOH 2066 A HOH 2067 4 HOH HOH 2067 A HOH 2069 4 HOH HOH 2069 A HOH 2070 4 HOH HOH 2070 A HOH 2071 4 HOH HOH 2071 A HOH 2072 4 HOH HOH 2072 A HOH 2073 4 HOH HOH 2073 A HOH 2074 4 HOH HOH 2074 A HOH 2075 4 HOH HOH 2075 A HOH 2076 4 HOH HOH 2076 A HOH 2077 4 HOH HOH 2077 A HOH 2078 4 HOH HOH 2078 A HOH 2079 4 HOH HOH 2079 A HOH 2080 4 HOH HOH 2080 A HOH 2081 4 HOH HOH 2081 A HOH 2082 4 HOH HOH 2082 A HOH 2083 4 HOH HOH 2083 A HOH 2084 4 HOH HOH 2084 A HOH 2085 4 HOH HOH 2085 A HOH 2086 4 HOH HOH 2086 A HOH 2087 4 HOH HOH 2087 A HOH 2088 4 HOH HOH 2088 A HOH 2089 4 HOH HOH 2089 A HOH 2090 4 HOH HOH 2090 A HOH 2091 4 HOH HOH 2091 A HOH 2092 4 HOH HOH 2092 A HOH 2093 4 HOH HOH 2093 A HOH 2094 4 HOH HOH 2094 A HOH 2095 4 HOH HOH 2095 A HOH 2096 4 HOH HOH 2096 A HOH 2097 4 HOH HOH 2097 A HOH 2098 4 HOH HOH 2098 A HOH 2099 4 HOH HOH 2099 A HOH 2100 4 HOH HOH 2100 A HOH 2101 4 HOH HOH 2101 A HOH 2102 4 HOH HOH 2102 A HOH 2103 4 HOH HOH 2103 A HOH 2104 4 HOH HOH 2104 A HOH 2105 4 HOH HOH 2105 A HOH 2106 4 HOH HOH 2106 A HOH 2107 4 HOH HOH 2107 A HOH 2108 4 HOH HOH 2108 A HOH 2002 4 HOH HOH 2007 B HOH 2062 4 HOH HOH 2062 B HOH 2068 4 HOH HOH 2068 B ALA 1 n 1 ALA 1 A ALA 2 n 2 ALA 2 A THR 3 n 3 THR 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A VAL 6 n 6 VAL 6 A THR 7 n 7 THR 7 A THR 8 n 8 THR 8 A ASN 9 n 9 ASN 9 A PRO 10 n 10 PRO 10 A THR 11 n 11 THR 11 A SER 12 n 12 SER 12 A ASN 13 n 13 ASN 13 A ASP 14 n 14 ASP 14 A GLU 15 n 15 GLU 15 A GLU 16 n 16 GLU 16 A TYR 17 n 17 TYR 17 A ILE 18 n 18 ILE 18 A THR 19 n 19 THR 19 A GLN 20 n 20 GLN 20 A VAL 21 n 21 VAL 21 A THR 22 n 22 THR 22 A VAL 23 n 23 VAL 23 A GLY 24 n 24 GLY 24 A ASP 25 n 25 ASP 25 A ASP 26 n 26 ASP 26 A THR 27 n 27 THR 27 A LEU 28 n 28 LEU 28 A GLY 29 n 29 GLY 29 A LEU 30 n 30 LEU 30 A ASP 31 n 31 ASP 31 A PHE 32 n 32 PHE 32 A ASP 33 n 33 ASP 33 A THR 34 n 34 THR 34 A GLY 35 n 35 GLY 35 A SER 36 n 36 SER 36 A ALA 37 n 37 ALA 37 A ASP 38 n 38 ASP 38 A LEU 39 n 39 LEU 39 A TRP 40 n 40 TRP 40 A VAL 41 n 41 VAL 41 A PHE 42 n 42 PHE 42 A SER 43 n 43 SER 43 A SER 44 n 44 SER 44 A GLN 45 n 45 GLN 45 A THR 46 n 46 THR 46 A PRO 47 n 47 PRO 47 A SER 48 n 48 SER 48 A SER 49 n 49 SER 49 A GLU 50 n 50 GLU 50 A ARG 51 n 51 ARG 51 A SER 52 n 52 SER 52 A GLY 53 n 53 GLY 53 A HIS 54 n 54 HIS 54 A ASP 55 n 55 ASP 55 A TYR 56 n 56 TYR 56 A TYR 57 n 57 TYR 57 A THR 58 n 58 THR 58 A PRO 59 n 59 PRO 59 A GLY 60 n 60 GLY 60 A SER 61 n 61 SER 61 A SER 62 n 62 SER 62 A ALA 63 n 63 ALA 63 A GLN 64 n 64 GLN 64 A LYS 65 n 65 LYS 65 A ILE 66 n 66 ILE 66 A ASP 67 n 67 ASP 67 A GLY 68 n 68 GLY 68 A ALA 69 n 69 ALA 69 A THR 70 n 70 THR 70 A TRP 71 n 71 TRP 71 A SER 72 n 72 SER 72 A ILE 73 n 73 ILE 73 A SER 74 n 74 SER 74 A TYR 75 n 75 TYR 75 A GLY 76 n 76 GLY 76 A ASP 77 n 77 ASP 77 A GLY 78 n 78 GLY 78 A SER 79 n 79 SER 79 A SER 80 n 80 SER 80 A ALA 81 n 81 ALA 81 A SER 82 n 82 SER 82 A GLY 83 n 83 GLY 83 A ASP 84 n 84 ASP 84 A VAL 85 n 85 VAL 85 A TYR 86 n 86 TYR 86 A LYS 87 n 87 LYS 87 A ASP 88 n 88 ASP 88 A LYS 89 n 89 LYS 89 A VAL 90 n 90 VAL 90 A THR 91 n 91 THR 91 A VAL 92 n 92 VAL 92 A GLY 93 n 93 GLY 93 A GLY 94 n 94 GLY 94 A VAL 95 n 95 VAL 95 A SER 96 n 96 SER 96 A TYR 97 n 97 TYR 97 A ASP 98 n 98 ASP 98 A SER 99 n 99 SER 99 A GLN 100 n 100 GLN 100 A ALA 101 n 101 ALA 101 A VAL 102 n 102 VAL 102 A GLU 103 n 103 GLU 103 A SER 104 n 104 SER 104 A ALA 105 n 105 ALA 105 A GLU 106 n 106 GLU 106 A LYS 107 n 107 LYS 107 A VAL 108 n 108 VAL 108 A SER 109 n 109 SER 109 A SER 110 n 110 SER 110 A GLU 111 n 111 GLU 111 A PHE 112 n 112 PHE 112 A THR 113 n 113 THR 113 A GLN 114 n 114 GLN 114 A ASP 115 n 115 ASP 115 A THR 116 n 116 THR 116 A ALA 117 n 117 ALA 117 A ASN 118 n 118 ASN 118 A ASP 119 n 119 ASP 119 A GLY 120 n 120 GLY 120 A LEU 121 n 121 LEU 121 A LEU 122 n 122 LEU 122 A GLY 123 n 123 GLY 123 A LEU 124 n 124 LEU 124 A ALA 125 n 125 ALA 125 A PHE 126 n 126 PHE 126 A SER 127 n 127 SER 127 A SER 128 n 128 SER 128 A ILE 129 n 129 ILE 129 A ASN 130 n 130 ASN 130 A THR 131 n 131 THR 131 A VAL 132 n 132 VAL 132 A GLN 133 n 133 GLN 133 A PRO 134 n 134 PRO 134 A THR 135 n 135 THR 135 A PRO 136 n 136 PRO 136 A GLN 137 n 137 GLN 137 A LYS 138 n 138 LYS 138 A THR 139 n 139 THR 139 A PHE 140 n 140 PHE 140 A PHE 141 n 141 PHE 141 A ASP 142 n 142 ASP 142 A ASN 143 n 143 ASN 143 A VAL 144 n 144 VAL 144 A LYS 145 n 145 LYS 145 A SER 146 n 146 SER 146 A SER 147 n 147 SER 147 A LEU 148 n 148 LEU 148 A SER 149 n 149 SER 149 A GLU 150 n 150 GLU 150 A PRO 151 n 151 PRO 151 A ILE 152 n 152 ILE 152 A PHE 153 n 153 PHE 153 A ALA 154 n 154 ALA 154 A VAL 155 n 155 VAL 155 A ALA 156 n 156 ALA 156 A LEU 157 n 157 LEU 157 A LYS 158 n 158 LYS 158 A HIS 159 n 159 HIS 159 A ASN 160 n 160 ASN 160 A ALA 161 n 161 ALA 161 A PRO 162 n 162 PRO 162 A GLY 163 n 163 GLY 163 A VAL 164 n 164 VAL 164 A TYR 165 n 165 TYR 165 A ASP 166 n 166 ASP 166 A PHE 167 n 167 PHE 167 A GLY 168 n 168 GLY 168 A TYR 169 n 169 TYR 169 A THR 170 n 170 THR 170 A ASP 171 n 171 ASP 171 A SER 172 n 172 SER 172 A SER 173 n 173 SER 173 A LYS 174 n 174 LYS 174 A TYR 175 n 175 TYR 175 A THR 176 n 176 THR 176 A GLY 177 n 177 GLY 177 A SER 178 n 178 SER 178 A ILE 179 n 179 ILE 179 A THR 180 n 180 THR 180 A TYR 181 n 181 TYR 181 A THR 182 n 182 THR 182 A ASP 183 n 183 ASP 183 A VAL 184 n 184 VAL 184 A ASP 185 n 185 ASP 185 A ASN 186 n 186 ASN 186 A SER 187 n 187 SER 187 A GLN 188 n 188 GLN 188 A GLY 189 n 189 GLY 189 A PHE 190 n 190 PHE 190 A TRP 191 n 191 TRP 191 A GLY 192 n 192 GLY 192 A PHE 193 n 193 PHE 193 A THR 194 n 194 THR 194 A ALA 195 n 195 ALA 195 A ASP 196 n 196 ASP 196 A GLY 197 n 197 GLY 197 A TYR 198 n 198 TYR 198 A SER 199 n 199 SER 199 A ILE 200 n 200 ILE 200 A GLY 201 n 201 GLY 201 A SER 202 n 202 SER 202 A ASP 203 n 203 ASP 203 A SER 204 n 204 SER 204 A SER 205 n 205 SER 205 A SER 206 n 206 SER 206 A ASP 207 n 207 ASP 207 A SER 208 n 208 SER 208 A ILE 209 n 209 ILE 209 A THR 210 n 210 THR 210 A GLY 211 n 211 GLY 211 A ILE 212 n 212 ILE 212 A ALA 213 n 213 ALA 213 A ASP 214 n 214 ASP 214 A THR 215 n 215 THR 215 A GLY 216 n 216 GLY 216 A THR 217 n 217 THR 217 A THR 218 n 218 THR 218 A LEU 219 n 219 LEU 219 A LEU 220 n 220 LEU 220 A LEU 221 n 221 LEU 221 A LEU 222 n 222 LEU 222 A ASP 223 n 223 ASP 223 A ASP 224 n 224 ASP 224 A SER 225 n 225 SER 225 A ILE 226 n 226 ILE 226 A VAL 227 n 227 VAL 227 A ASP 228 n 228 ASP 228 A ALA 229 n 229 ALA 229 A TYR 230 n 230 TYR 230 A TYR 231 n 231 TYR 231 A GLU 232 n 232 GLU 232 A GLN 233 n 233 GLN 233 A VAL 234 n 234 VAL 234 A ASN 235 n 235 ASN 235 A GLY 236 n 236 GLY 236 A ALA 237 n 237 ALA 237 A SER 238 n 238 SER 238 A TYR 239 n 239 TYR 239 A ASP 240 n 240 ASP 240 A SER 241 n 241 SER 241 A SER 242 n 242 SER 242 A GLN 243 n 243 GLN 243 A GLY 244 n 244 GLY 244 A GLY 245 n 245 GLY 245 A TYR 246 n 246 TYR 246 A VAL 247 n 247 VAL 247 A PHE 248 n 248 PHE 248 A PRO 249 n 249 PRO 249 A SER 250 n 250 SER 250 A SER 251 n 251 SER 251 A ALA 252 n 252 ALA 252 A SER 253 n 253 SER 253 A LEU 254 n 254 LEU 254 A PRO 255 n 255 PRO 255 A ASP 256 n 256 ASP 256 A PHE 257 n 257 PHE 257 A SER 258 n 258 SER 258 A VAL 259 n 259 VAL 259 A THR 260 n 260 THR 260 A ILE 261 n 261 ILE 261 A GLY 262 n 262 GLY 262 A ASP 263 n 263 ASP 263 A TYR 264 n 264 TYR 264 A THR 265 n 265 THR 265 A ALA 266 n 266 ALA 266 A THR 267 n 267 THR 267 A VAL 268 n 268 VAL 268 A PRO 269 n 269 PRO 269 A GLY 270 n 270 GLY 270 A GLU 271 n 271 GLU 271 A TYR 272 n 272 TYR 272 A ILE 273 n 273 ILE 273 A SER 274 n 274 SER 274 A PHE 275 n 275 PHE 275 A ALA 276 n 276 ALA 276 A ASP 277 n 277 ASP 277 A VAL 278 n 278 VAL 278 A GLY 279 n 279 GLY 279 A ASN 280 n 280 ASN 280 A GLY 281 n 281 GLY 281 A GLN 282 n 282 GLN 282 A THR 283 n 283 THR 283 A PHE 284 n 284 PHE 284 A GLY 285 n 285 GLY 285 A GLY 286 n 286 GLY 286 A ILE 287 n 287 ILE 287 A GLN 288 n 288 GLN 288 A SER 289 n 289 SER 289 A ASN 290 n 290 ASN 290 A SER 291 n 291 SER 291 A GLY 292 n 292 GLY 292 A ILE 293 n 293 ILE 293 A GLY 294 n 294 GLY 294 A PHE 295 n 295 PHE 295 A SER 296 n 296 SER 296 A ILE 297 n 297 ILE 297 A PHE 298 n 298 PHE 298 A GLY 299 n 299 GLY 299 A ASP 300 n 300 ASP 300 A VAL 301 n 301 VAL 301 A PHE 302 n 302 PHE 302 A LEU 303 n 303 LEU 303 A LYS 304 n 304 LYS 304 A SER 305 n 305 SER 305 A GLN 306 n 306 GLN 306 A TYR 307 n 307 TYR 307 A VAL 308 n 308 VAL 308 A VAL 309 n 309 VAL 309 A PHE 310 n 310 PHE 310 A ASP 311 n 311 ASP 311 A ALA 312 n 312 ALA 312 A SER 313 n 313 SER 313 A GLY 314 n 314 GLY 314 A PRO 315 n 315 PRO 315 A ARG 316 n 316 ARG 316 A LEU 317 n 317 LEU 317 A GLY 318 n 318 GLY 318 A PHE 319 n 319 PHE 319 A ALA 320 n 320 ALA 320 A ALA 321 n 321 ALA 321 A GLN 322 n 322 GLN 322 A ALA 323 n 323 ALA 323 A IVA 2001 n 1 IVA 2001 B VAL 2002 n 2 VAL 2002 B VAL 2003 n 3 VAL 2003 B STA 2004 n 4 STA 2004 B ALA 2005 n 5 ALA 2005 B STA 2006 n 6 STA 2006 B author_and_software_defined_assembly PISA 2 dimeric 1500 -8 13010 A THR 3 GLYCOSYLATION SITE A THR 3 THR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 73 A N ILE 73 A O ALA 81 A O ALA 81 A N THR 91 A N THR 91 A O THR 22 A O THR 22 A N VAL 23 A N VAL 23 A O ASP 26 A O ASP 26 A N ASP 31 A N ASP 31 A O GLY 120 A O GLY 120 A O LEU 121 A O LEU 121 A N TRP 40 A N TRP 40 A N VAL 41 A N VAL 41 A O GLU 103 A O GLU 103 A N GLU 106 A N GLU 106 A O SER 82 A O SER 82 A N THR 91 A N THR 91 A O THR 22 A O THR 22 A N GLN 20 A N GLN 20 A O THR 7 A O THR 7 A O THR 8 A O THR 8 A N GLY 163 A N GLY 163 A N ASP 166 A N ASP 166 A O ALA 154 A O ALA 154 A O VAL 155 A O VAL 155 A N VAL 308 A N VAL 308 A O ASP 311 A O ASP 311 A N ARG 316 A N ARG 316 A O ALA 321 A O ALA 321 A N THR 176 A N THR 176 A N ALA 195 A N ALA 195 A O ILE 209 A O ILE 209 A N ILE 212 A N ILE 212 A O SER 296 A O SER 296 A O ILE 297 A O ILE 297 A N LEU 221 A N LEU 221 A N LEU 222 A N LEU 222 A O GLN 288 A O GLN 288 A N SER 205 A N SER 205 A O TYR 198 A O TYR 198 A O SER 199 A O SER 199 A N SER 258 A N SER 258 A N ILE 261 A N ILE 261 A O TYR 264 A O TYR 264 A N ASP 240 A N ASP 240 A O GLY 245 A O GLY 245 A O PHE 248 A O PHE 248 A N THR 283 A N THR 283 A O PHE 284 A O PHE 284 A N PHE 275 A N PHE 275 1 B STA 2004 30.09 1 B B STA ALA 2004 2005 -119.52 1 A SER 291 -36.52 119.40 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP CARBOHYDRATE.PARAM CARBOHYDRATE.TOP LIGAND.PARAM LIGAND.TOP 16.5 -0.49 0.00 0.52 1.28 0.00 -0.79 0.221 0.005 0.185 0.185 1.90 52.3 1928 19551 19551 9.9 88.2 RANDOM 1 RESTRAINED THROUGHOUT 0.0 0.0 MOLECULAR REPLACEMENT CNS FLAT MODEL 34.8325 0.305204 0.24 0.20 5.00 0.04 1.90 52.3 107 2557 11 0 2439 0.005 1.3 26.4 0.66 1.29 1.50 1.89 2.00 2.07 2.00 2.95 2.50 0.23 0.013 0.19 2.02 304 2479 6 10.9 75.9 6.8 1.9 52.34 1IZE 58695 58695 0.0 0.0 0.092 1 100 1.9 2.02 1 75.9 data scaling SCALEPACK refinement CNS phasing CNS Crystal structure of Aspergillus oryzae Aspartic proteinase complexed with pepstatin 1 N N 2 N N 3 N N 4 N N 4 N N A SER 12 A SER 12 HELX_P A GLU 15 A GLU 15 5 1 4 A PRO 47 A PRO 47 HELX_P A SER 52 A SER 52 1 2 6 A SER 109 A SER 109 HELX_P A ASP 115 A ASP 115 1 3 7 A PHE 126 A PHE 126 HELX_P A ASN 130 A ASN 130 5 4 5 A THR 139 A THR 139 HELX_P A LYS 145 A LYS 145 1 5 7 A SER 146 A SER 146 HELX_P A LEU 148 A LEU 148 5 6 3 A ASP 223 A ASP 223 HELX_P A GLU 232 A GLU 232 1 7 10 A PRO 269 A PRO 269 HELX_P A ILE 273 A ILE 273 1 8 5 A GLY 299 A GLY 299 HELX_P A LYS 304 A LYS 304 1 9 6 covale 1.390 one O-Glycosylation A THR 3 A OG1 THR 3 1_555 A MAN 1001 C C1 MAN 1_555 covale 1.328 both B IVA 2001 B C IVA 1 1_555 B VAL 2002 B N VAL 2 1_555 covale 1.330 both B VAL 2003 B C VAL 3 1_555 B STA 2004 B N STA 4 1_555 covale 1.330 both B STA 2004 B C STA 4 1_555 B ALA 2005 B N ALA 5 1_555 covale 1.330 both B ALA 2005 B C ALA 5 1_555 B STA 2006 B N STA 6 1_555 HYDROLASE/HYDROLASE INHIBITOR acid protease, sugar binding, HYDROLASE-HYDROLASE INHIBITOR complex A GLN 133 A GLN 133 1 A PRO 134 A PRO 134 -0.02 A GLY 314 A GLY 314 1 A PRO 315 A PRO 315 0.06 Q9URD0_ASPOR UNP 1 68 Q9URD0 AATGSVTTNPTSNDEEYITQVTVGDDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSAQKIDGATWSISYGDGSS ASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVKSSLSEPIFAVALKHN APGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDSSSDSITGIADTGTTLLLLDDSIVDAYYEQVNGASYD SSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQTFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFA AQA 1IZE PDB 2 1IZE 68 390 1IZE 1 323 Q9URD0 A 1 1 323 2001 2006 1IZE 2001 2006 1IZE B 2 1 6 15 5 4 4 anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 64 A GLN 64 A SER 74 A SER 74 A SER 80 A SER 80 A VAL 92 A VAL 92 A TYR 17 A TYR 17 A VAL 23 A VAL 23 A ASP 26 A ASP 26 A ASP 33 A ASP 33 A GLY 120 A GLY 120 A GLY 123 A GLY 123 A TRP 40 A TRP 40 A VAL 41 A VAL 41 A VAL 95 A VAL 95 A VAL 108 A VAL 108 A SER 80 A SER 80 A VAL 92 A VAL 92 A TYR 17 A TYR 17 A VAL 23 A VAL 23 A GLY 4 A GLY 4 A PRO 10 A PRO 10 A GLY 163 A GLY 163 A PHE 167 A PHE 167 A ILE 152 A ILE 152 A ALA 156 A ALA 156 A GLN 306 A GLN 306 A ASP 311 A ASP 311 A ARG 316 A ARG 316 A GLN 322 A GLN 322 A TYR 175 A TYR 175 A ASP 183 A ASP 183 A GLY 192 A GLY 192 A ALA 195 A ALA 195 A ILE 209 A ILE 209 A ALA 213 A ALA 213 A SER 296 A SER 296 A PHE 298 A PHE 298 A LEU 220 A LEU 220 A LEU 222 A LEU 222 A ILE 287 A ILE 287 A SER 289 A SER 289 A ASP 203 A ASP 203 A SER 205 A SER 205 A GLY 197 A GLY 197 A ILE 200 A ILE 200 A PHE 257 A PHE 257 A ILE 261 A ILE 261 A TYR 264 A TYR 264 A VAL 268 A VAL 268 A SER 238 A SER 238 A ASP 240 A ASP 240 A GLY 245 A GLY 245 A PRO 249 A PRO 249 A GLN 282 A GLN 282 A GLY 285 A GLY 285 A SER 274 A SER 274 A ASP 277 A ASP 277 5 C 1 2 1