0.016184 0.009344 0.000000 0.000000 0.018688 0.000000 0.000000 0.000000 0.012074 0.00000 0.00000 0.00000 Weber, J. Mesters, J.R. Lepsik, M. Prejdova, J. Svec, M. Sponarova, J. Mlcochova, P. Skalicka, K. Strisovsky, K. Uhlikova, T. Soucek, M. Machala, L. Stankova, M. Vondrasek, J. Klimkait, T. Kraeusslich, H.-G. Hilgenfeld, R. Konvalinka, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 61.788 61.788 82.821 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C38 H47 N5 O7 685.809 {(1S)-1-BENZYL-4-[3-CARBAMOYL-1-(1-CARBAMOYL-2-PHENYL-ETHYLCARBAMOYL)-(S)-PROPYLCARBAMOYL]-2-OXO-5-PHENYL-PENTYL}-CARBAMIC ACID TERT-BUTYL ESTER non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N O N 292 N C N 293 N N N 294 S C N 295 N C Y 296 N C Y 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N C N 302 N N N 303 N C N 304 N O N 305 S C N 306 N C N 307 N C N 308 N C N 309 N O N 310 N N N 311 N N N 312 N C N 313 N O N 314 R C N 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C N 322 N C N 323 N C N 324 N O N 325 S C N 326 N N N 327 N C N 328 N O N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N N N 389 S C N 390 N C N 391 N O N 392 R C N 393 N O N 394 N C N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N N N 406 S C N 407 N C N 408 N O N 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N N Y 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N N N 433 S C N 434 N C N 435 N O N 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C N 443 N O N 444 N O N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N N N 457 S C N 458 N C N 459 N O N 460 N C N 461 N C N 462 N C N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing Y 288 N doub Y 289 N sing Y 290 N sing N 291 N sing Y 292 N doub N 293 N sing Y 294 N sing N 295 N sing Y 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub N 331 N sing Y 332 N sing N 333 N sing Y 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing Y 365 N doub Y 366 N sing Y 367 N sing N 368 N sing Y 369 N doub N 370 N sing Y 371 N sing N 372 N sing Y 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N doub N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing Y 403 N doub Y 404 N sing Y 405 N sing N 406 N sing Y 407 N doub Y 408 N sing Y 409 N sing N 410 N sing Y 411 N sing Y 412 N doub N 413 N sing Y 414 N doub N 415 N sing Y 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N doub N 427 N sing N 428 N sing N 429 N sing N 430 N sing Y 431 N doub Y 432 N sing Y 433 N sing N 434 N sing Y 435 N doub N 436 N sing Y 437 N doub N 438 N sing Y 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N doub N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing UK J.MOL.BIOL. JMOBAK 0070 0022-2836 324 739 754 10.1016/S0022-2836(02)01139-7 12460574 Unusual Binding Mode of an HIV-1 Protease Inhibitor Explains its Potency against Multi-drug-resistant Virus Strains 2002 10.2210/pdb1izi/pdb pdb_00001izi 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-08-10 MARRESEARCH SAGITALLY FOCUSED Si(111) SINGLE WAVELENGTH M x-ray 1 0.802 1.0 X13 EMBL/DESY, HAMBURG 0.802 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 10846.781 proteinase 3.4.23.16 A71V, V82T, I84V 2 man polymer 35.453 CHLORIDE ION 2 syn non-polymer 685.809 {(1S)-1-BENZYL-4-[3-CARBAMOYL-1-(1-CARBAMOYL-2-PHENYL-ETHYLCARBAMOYL)-(S)-PROPYLCARBAMOYL]-2-OXO-5-PHENYL-PENTYL}-CARBAMIC ACID TERT-BUTYL ESTER 1 syn non-polymer 18.015 water 41 nat water protease no no PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKVIGTVLVGPT PTNVIGRNLLTQIGCTLNF PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKVIGTVLVGPT PTNVIGRNLLTQIGCTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia Escherichia coli sample 11676 Human immunodeficiency virus 1 511693 Escherichia coli BL21 BL21 plasmid pET24a 1 2.10 41.50 VAPOR DIFFUSION, HANGING DROP 5 MES, EDTA, DTT, NaCl, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 294K 294 database_2 diffrn_source struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model struct_ncs_dom_lim repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Data collection Refinement description 1 0 2002-12-23 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-11-10 1 4 2023-10-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _diffrn_source.pdbx_synchrotron_site _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.end_auth_comp_id 1IZH contains the same protein, wild type PDBJ Y PDBJ 2002-10-02 REL CL CHLORIDE ION Q50 {(1S)-1-BENZYL-4-[3-CARBAMOYL-1-(1-CARBAMOYL-2-PHENYL-ETHYLCARBAMOYL)-(S)-PROPYLCARBAMOYL]-2-OXO-5-PHENYL-PENTYL}-CARBAMIC ACID TERT-BUTYL ESTER HOH water 1IZH PDB experimental model CL 1 2 CL CL 100 A CL 2 2 CL CL 100 B Q50 1 3 Q50 Q50 1001 B HOH 4 4 HOH HOH 101 A HOH 7 4 HOH HOH 102 A HOH 10 4 HOH HOH 103 A HOH 13 4 HOH HOH 104 A HOH 14 4 HOH HOH 105 A HOH 15 4 HOH HOH 106 A HOH 18 4 HOH HOH 107 A HOH 21 4 HOH HOH 108 A HOH 23 4 HOH HOH 109 A HOH 24 4 HOH HOH 110 A HOH 25 4 HOH HOH 111 A HOH 27 4 HOH HOH 112 A HOH 30 4 HOH HOH 113 A HOH 32 4 HOH HOH 114 A HOH 35 4 HOH HOH 115 A HOH 37 4 HOH HOH 116 A HOH 39 4 HOH HOH 117 A HOH 41 4 HOH HOH 118 A HOH 43 4 HOH HOH 119 A HOH 44 4 HOH HOH 120 A HOH 48 4 HOH HOH 121 A HOH 3 4 HOH HOH 1002 B HOH 5 4 HOH HOH 1003 B HOH 6 4 HOH HOH 1004 B HOH 8 4 HOH HOH 1005 B HOH 9 4 HOH HOH 1006 B HOH 11 4 HOH HOH 1007 B HOH 12 4 HOH HOH 1008 B HOH 16 4 HOH HOH 1009 B HOH 17 4 HOH HOH 1010 B HOH 19 4 HOH HOH 1011 B HOH 20 4 HOH HOH 1012 B HOH 22 4 HOH HOH 1013 B HOH 26 4 HOH HOH 1014 B HOH 28 4 HOH HOH 1015 B HOH 31 4 HOH HOH 1016 B HOH 33 4 HOH HOH 1017 B HOH 36 4 HOH HOH 1018 B HOH 38 4 HOH HOH 1019 B HOH 42 4 HOH HOH 1020 B HOH 46 4 HOH HOH 1021 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A ASN 37 n 37 ASN 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A VAL 71 n 71 VAL 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A THR 82 n 82 THR 82 A ASN 83 n 83 ASN 83 A VAL 84 n 84 VAL 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B GLN 7 n 7 GLN 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B LEU 33 n 33 LEU 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B ASN 37 n 37 ASN 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B LEU 63 n 63 LEU 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B VAL 71 n 71 VAL 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B THR 82 n 82 THR 82 B ASN 83 n 83 ASN 83 B VAL 84 n 84 VAL 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B author_and_software_defined_assembly PISA 2 dimeric 5330 -47 8730 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 3 A O ILE 3 B N LEU 97 B N LEU 97 B O ASN 98 B O ASN 98 A N THR 96 A N THR 96 A N LEU 97 A N LEU 97 B O ILE 3 B O ILE 3 A N GLY 49 A N GLY 49 A O GLY 52 A O GLY 52 A N GLU 65 A N GLU 65 A O LYS 14 A O LYS 14 A N ILE 15 A N ILE 15 A O GLN 18 A O GLN 18 A O LEU 23 A O LEU 23 A N ILE 85 A N ILE 85 A N VAL 84 A N VAL 84 A O VAL 32 A O VAL 32 A N LEU 33 A N LEU 33 A O LEU 76 A O LEU 76 A O VAL 77 A O VAL 77 A N ARG 57 A N ARG 57 B N GLY 49 B N GLY 49 B O GLY 52 B O GLY 52 B N GLU 65 B N GLU 65 B O LYS 14 B O LYS 14 B O ILE 15 B O ILE 15 B N GLN 18 B N GLN 18 B O LEU 23 B O LEU 23 B N ILE 85 B N ILE 85 B N VAL 84 B N VAL 84 B O VAL 32 B O VAL 32 B N LEU 33 B N LEU 33 B O LEU 76 B O LEU 76 B O VAL 77 B O VAL 77 B N ARG 57 B N ARG 57 1 A CG GLU 34 A CG GLU 34 1 Y 1 A CD GLU 34 A CD GLU 34 1 Y 1 A OE1 GLU 34 A OE1 GLU 34 1 Y 1 A OE2 GLU 34 A OE2 GLU 34 1 Y 1 A CB ARG 41 A CB ARG 41 1 Y 1 A CG ARG 41 A CG ARG 41 1 Y 1 A CD ARG 41 A CD ARG 41 1 Y 1 A NE ARG 41 A NE ARG 41 1 Y 1 A CZ ARG 41 A CZ ARG 41 1 Y 1 A NH1 ARG 41 A NH1 ARG 41 1 Y 1 A NH2 ARG 41 A NH2 ARG 41 1 Y 1 A CB LYS 43 A CB LYS 43 1 Y 1 A CG LYS 43 A CG LYS 43 1 Y 1 A CD LYS 43 A CD LYS 43 1 Y 1 A CE LYS 43 A CE LYS 43 1 Y 1 A NZ LYS 43 A NZ LYS 43 1 Y 1 A CG LYS 45 A CG LYS 45 1 Y 1 A CD LYS 45 A CD LYS 45 1 Y 1 A CE LYS 45 A CE LYS 45 1 Y 1 A NZ LYS 45 A NZ LYS 45 1 Y 1 A CB LYS 55 A CB LYS 55 1 Y 1 A CG LYS 55 A CG LYS 55 1 Y 1 A CD LYS 55 A CD LYS 55 1 Y 1 A CE LYS 55 A CE LYS 55 1 Y 1 A NZ LYS 55 A NZ LYS 55 1 Y 1 B CB ARG 41 B CB ARG 41 1 Y 1 B CG ARG 41 B CG ARG 41 1 Y 1 B CD ARG 41 B CD ARG 41 1 Y 1 B NE ARG 41 B NE ARG 41 1 Y 1 B CZ ARG 41 B CZ ARG 41 1 Y 1 B NH1 ARG 41 B NH1 ARG 41 1 Y 1 B NH2 ARG 41 B NH2 ARG 41 1 Y 1 B CB LYS 43 B CB LYS 43 1 Y 1 B CG LYS 43 B CG LYS 43 1 Y 1 B CD LYS 43 B CD LYS 43 1 Y 1 B CE LYS 43 B CE LYS 43 1 Y 1 B NZ LYS 43 B NZ LYS 43 1 Y 1 B CG LYS 45 B CG LYS 45 1 Y 1 B CD LYS 45 B CD LYS 45 1 Y 1 B CE LYS 45 B CE LYS 45 1 Y 1 B NZ LYS 45 B NZ LYS 45 1 Y 1 B CB LYS 55 B CB LYS 55 1 Y 1 B CG LYS 55 B CG LYS 55 1 Y 1 B CD LYS 55 B CD LYS 55 1 Y 1 B CE LYS 55 B CE LYS 55 1 Y 1 B NZ LYS 55 B NZ LYS 55 1 Y 1 6.84 0.90 118.30 125.14 A A A CB CG OD2 ASP ASP ASP 29 29 29 N 1 5.79 0.90 118.30 124.09 B B B CB CG OD2 ASP ASP ASP 25 25 25 N 1 6.64 0.90 118.30 124.94 B B B CB CG OD2 ASP ASP ASP 60 60 60 N 1 3.30 0.50 120.30 123.60 B B B NE CZ NH2 ARG ARG ARG 87 87 87 N 1 A PRO 79 -75.69 36.14 1 B GLU 34 -55.49 170.57 1 B PRO 79 -80.04 45.19 38.732 0.40 0.20 0.00 0.40 0.00 -0.60 0.959 0.923 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.24797 0.18942 0.19202 0.19202 2.15 53.45 464 9229 9229 4.8 99.23 6.383 0.162 RANDOM 1 THROUGHOUT 0 0 MOLECULAR REPLACEMENT 0.303 0.224 0.80 0.80 1.40 1IZH MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.15 53.45 41 1569 52 0 1476 0.023 0.022 1554 0.001 0.020 1484 2.279 2.011 2113 0.904 3.000 3438 4.725 5.000 196 0.126 0.200 252 0.008 0.020 1702 0.001 0.020 282 0.209 0.300 277 0.272 0.300 1778 0.105 0.500 1021 0.190 0.500 96 0.083 0.300 8 0.208 0.300 28 0.808 0.500 3 1.855 2.000 970 3.019 3.000 1567 1.867 2.000 584 3.074 3.000 546 0.363 0.228 2.207 39 676 20 33.5 2.15 40.00 1IZI 9695 9695 0 0 0.06 1 19.76 5.62 98.9 0.323 2.15 2.23 952 99.9 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement REFMAC 5.1.24 Inhibitor of HIV protease with unusual binding mode potently inhibiting multi-resistant protease mutants 1 N N 1 N N 2 N N 2 N N 3 N N 4 N N 4 N N The biological assembly is the homodimer as found in the asymmetric unit A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 A GLN 92 A GLN 92 HELX_P A GLY 94 A GLY 94 5 2 3 B GLY 86 B GLY 86 HELX_P B ILE 93 B ILE 93 1 3 8 HYDROLASE HIV-1 proteinase, triple mutant, potent inhibitor, subsite binding, hydrolase B PRO 1 B PRO 1 B PHE 99 B PHE 99 Q90EB9_9HIV1 UNP 1 1 Q90EB9 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 1 99 1IZI 1 99 Q90EB9 A 1 1 99 1 99 1IZI 1 99 Q90EB9 B 1 1 99 1 ALA engineered mutation VAL 71 1IZI A Q90EB9 UNP 71 71 1 VAL engineered mutation THR 82 1IZI A Q90EB9 UNP 82 82 1 ILE engineered mutation VAL 84 1IZI A Q90EB9 UNP 84 84 2 ALA engineered mutation VAL 71 1IZI B Q90EB9 UNP 71 71 2 VAL engineered mutation THR 82 1IZI B Q90EB9 UNP 82 82 2 ILE engineered mutation VAL 84 1IZI B Q90EB9 UNP 84 84 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B ILE 3 B ILE 3 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A VAL 84 A VAL 84 A ILE 85 A ILE 85 A VAL 32 A VAL 32 A LEU 33 A LEU 33 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 43 B LYS 43 B GLY 49 B GLY 49 B GLY 52 B GLY 52 B ILE 66 B ILE 66 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B VAL 84 B VAL 84 B ILE 85 B ILE 85 B VAL 32 B VAL 32 B LEU 33 B LEU 33 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B GLY 52 B GLY 52 B ILE 66 B ILE 66 BINDING SITE FOR RESIDUE CL A 100 A CL 100 Software 2 BINDING SITE FOR RESIDUE CL B 100 B CL 100 Software 4 BINDING SITE FOR RESIDUE Q50 B 1001 B Q50 1001 Software 21 A THR 74 A THR 74 2 1_555 A ASN 88 A ASN 88 2 1_555 B GLY 73 B GLY 73 4 1_555 B THR 74 B THR 74 4 1_555 B ASN 88 B ASN 88 4 1_555 B GLN 92 B GLN 92 4 1_555 A ARG 8 A ARG 8 21 1_555 A ASP 25 A ASP 25 21 1_555 A GLY 27 A GLY 27 21 1_555 A ASP 30 A ASP 30 21 1_555 A VAL 32 A VAL 32 21 1_555 A ILE 47 A ILE 47 21 1_555 A GLY 48 A GLY 48 21 1_555 A GLY 49 A GLY 49 21 1_555 A THR 82 A THR 82 21 1_555 B ASP 25 B ASP 25 21 1_555 B GLY 27 B GLY 27 21 1_555 B ALA 28 B ALA 28 21 1_555 B ASP 29 B ASP 29 21 1_555 B ASP 30 B ASP 30 21 1_555 B ILE 47 B ILE 47 21 1_555 B GLY 48 B GLY 48 21 1_555 B GLY 49 B GLY 49 21 1_555 B ILE 50 B ILE 50 21 1_555 B PRO 81 B PRO 81 21 1_555 B HOH 1002 G HOH 21 1_555 B HOH 1014 G HOH 21 1_555 169 P 61