0.020037
0.000000
0.000000
0.000000
0.020037
0.000000
0.000000
0.000000
0.005817
0.00000
0.00000
0.00000
Lo, Y.-C.
Shaw, J.-F.
Liaw, Y.-C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
49.907
49.907
171.898
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C7 H16 N O6 P
241.179
n
2-AMINO-3-(DIETHOXY-PHOSPHORYLOXY)-PROPIONIC ACID
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
O
N
287
N
O
N
288
N
O
N
289
N
P
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
S
N
322
N
O
N
323
N
O
N
324
N
O
N
325
N
O
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
R
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
N
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
330
539
551
10.1016/S0022-2836(03)00637-5
12842470
Crystal Structure of Escherichia coli Thioesterase I/Protease I/Lysophospholipase L1: Consensus Sequence Blocks Constitute the Catalytic Center of SGNH-hydrolases through a Conserved Hydrogen Bond Network
2003
10.2210/pdb1j00/pdb
pdb_00001j00
133
1
IMAGE PLATE
MAC Science DIP-2030
Si111 Channel
SINGLE WAVELENGTH
M
x-ray
1
1.12714
1.0
BL17B2
NSRRC
1.12714
SYNCHROTRON
NSRRC BEAMLINE BL17B2
21697.500
Thioesterase I
3.1.2.-, 3.1.1.5
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
91
nat
water
Acyl-CoA thioesterase I, Protease I, Lysophospholipase L1
no
yes
ADTLLILGD(SDP)LSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGL
RGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEVYLKPQWMQDDGI
HPNRDAQPFIADWMAKQLQPLVNHDSLEHHHHHH
ADTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQ
PQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEVYLKPQWMQDDGIHPNR
DAQPFIADWMAKQLQPLVNHDSLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
tesA/apeA/pldC
562
Escherichia coli
469008
Escherichia coli
BL21(DE3)
Plasmid
pET-20b(+)
1
2.47
50.10
VAPOR DIFFUSION, HANGING DROP
6.5
2-[N-morpholino]ethanesulfonic acid, PEGMME5000, Ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-07-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-10-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1JRL contains the same protein, L109P mutant
1IVN contains the same protein, native TAP structure
PDBJ
Y
PDBJ
2002-10-18
REL
REL
SO4
SULFATE ION
HOH
water
1JRL
PDB ENTRY 1JRL
PDB
experimental model
SO4
501
2
SO4
SO4
501
A
HOH
1001
3
HOH
HOH
1001
A
HOH
1002
3
HOH
HOH
1002
A
HOH
1003
3
HOH
HOH
1003
A
HOH
1004
3
HOH
HOH
1004
A
HOH
1005
3
HOH
HOH
1005
A
HOH
1006
3
HOH
HOH
1006
A
HOH
1007
3
HOH
HOH
1007
A
HOH
1008
3
HOH
HOH
1008
A
HOH
1009
3
HOH
HOH
1009
A
HOH
1010
3
HOH
HOH
1010
A
HOH
1011
3
HOH
HOH
1011
A
HOH
1012
3
HOH
HOH
1012
A
HOH
1013
3
HOH
HOH
1013
A
HOH
1014
3
HOH
HOH
1014
A
HOH
1015
3
HOH
HOH
1015
A
HOH
1016
3
HOH
HOH
1016
A
HOH
1017
3
HOH
HOH
1017
A
HOH
1018
3
HOH
HOH
1018
A
HOH
1019
3
HOH
HOH
1019
A
HOH
1020
3
HOH
HOH
1020
A
HOH
1021
3
HOH
HOH
1021
A
HOH
1022
3
HOH
HOH
1022
A
HOH
1023
3
HOH
HOH
1023
A
HOH
1024
3
HOH
HOH
1024
A
HOH
1025
3
HOH
HOH
1025
A
HOH
1026
3
HOH
HOH
1026
A
HOH
1027
3
HOH
HOH
1027
A
HOH
1028
3
HOH
HOH
1028
A
HOH
1029
3
HOH
HOH
1029
A
HOH
1030
3
HOH
HOH
1030
A
HOH
1031
3
HOH
HOH
1031
A
HOH
1032
3
HOH
HOH
1032
A
HOH
1033
3
HOH
HOH
1033
A
HOH
1034
3
HOH
HOH
1034
A
HOH
1035
3
HOH
HOH
1035
A
HOH
1036
3
HOH
HOH
1036
A
HOH
1037
3
HOH
HOH
1037
A
HOH
1038
3
HOH
HOH
1038
A
HOH
1039
3
HOH
HOH
1039
A
HOH
1040
3
HOH
HOH
1040
A
HOH
1041
3
HOH
HOH
1041
A
HOH
1042
3
HOH
HOH
1042
A
HOH
1043
3
HOH
HOH
1043
A
HOH
1044
3
HOH
HOH
1044
A
HOH
1045
3
HOH
HOH
1045
A
HOH
1046
3
HOH
HOH
1046
A
HOH
1047
3
HOH
HOH
1047
A
HOH
1048
3
HOH
HOH
1048
A
HOH
1049
3
HOH
HOH
1049
A
HOH
1050
3
HOH
HOH
1050
A
HOH
1051
3
HOH
HOH
1051
A
HOH
1052
3
HOH
HOH
1052
A
HOH
1053
3
HOH
HOH
1053
A
HOH
1054
3
HOH
HOH
1054
A
HOH
1055
3
HOH
HOH
1055
A
HOH
1056
3
HOH
HOH
1056
A
HOH
1057
3
HOH
HOH
1057
A
HOH
1058
3
HOH
HOH
1058
A
HOH
1059
3
HOH
HOH
1059
A
HOH
1060
3
HOH
HOH
1060
A
HOH
1061
3
HOH
HOH
1061
A
HOH
1062
3
HOH
HOH
1062
A
HOH
1063
3
HOH
HOH
1063
A
HOH
1064
3
HOH
HOH
1064
A
HOH
1065
3
HOH
HOH
1065
A
HOH
1066
3
HOH
HOH
1066
A
HOH
1067
3
HOH
HOH
1067
A
HOH
1068
3
HOH
HOH
1068
A
HOH
1069
3
HOH
HOH
1069
A
HOH
1070
3
HOH
HOH
1070
A
HOH
1071
3
HOH
HOH
1071
A
HOH
1072
3
HOH
HOH
1072
A
HOH
1073
3
HOH
HOH
1073
A
HOH
1074
3
HOH
HOH
1074
A
HOH
1075
3
HOH
HOH
1075
A
HOH
1076
3
HOH
HOH
1076
A
HOH
1077
3
HOH
HOH
1077
A
HOH
1078
3
HOH
HOH
1078
A
HOH
1079
3
HOH
HOH
1079
A
HOH
1080
3
HOH
HOH
1080
A
HOH
1081
3
HOH
HOH
1081
A
HOH
1082
3
HOH
HOH
1082
A
HOH
1083
3
HOH
HOH
1083
A
HOH
1084
3
HOH
HOH
1084
A
HOH
1085
3
HOH
HOH
1085
A
HOH
1086
3
HOH
HOH
1086
A
HOH
1087
3
HOH
HOH
1087
A
HOH
1088
3
HOH
HOH
1088
A
HOH
1089
3
HOH
HOH
1089
A
HOH
1090
3
HOH
HOH
1090
A
HOH
1091
3
HOH
HOH
1091
A
ALA
1
n
1
ALA
1
A
ASP
2
n
2
ASP
2
A
THR
3
n
3
THR
3
A
LEU
4
n
4
LEU
4
A
LEU
5
n
5
LEU
5
A
ILE
6
n
6
ILE
6
A
LEU
7
n
7
LEU
7
A
GLY
8
n
8
GLY
8
A
ASP
9
n
9
ASP
9
A
SDP
10
n
10
SDP
10
A
LEU
11
n
11
LEU
11
A
SER
12
n
12
SER
12
A
ALA
13
n
13
ALA
13
A
GLY
14
n
14
GLY
14
A
TYR
15
n
15
TYR
15
A
ARG
16
n
16
ARG
16
A
MET
17
n
17
MET
17
A
SER
18
n
18
SER
18
A
ALA
19
n
19
ALA
19
A
SER
20
n
20
SER
20
A
ALA
21
n
21
ALA
21
A
ALA
22
n
22
ALA
22
A
TRP
23
n
23
TRP
23
A
PRO
24
n
24
PRO
24
A
ALA
25
n
25
ALA
25
A
LEU
26
n
26
LEU
26
A
LEU
27
n
27
LEU
27
A
ASN
28
n
28
ASN
28
A
ASP
29
n
29
ASP
29
A
LYS
30
n
30
LYS
30
A
TRP
31
n
31
TRP
31
A
n
32
32
A
SER
33
n
33
SER
33
A
LYS
34
n
34
LYS
34
A
THR
35
n
35
THR
35
A
SER
36
n
36
SER
36
A
VAL
37
n
37
VAL
37
A
VAL
38
n
38
VAL
38
A
ASN
39
n
39
ASN
39
A
ALA
40
n
40
ALA
40
A
SER
41
n
41
SER
41
A
ILE
42
n
42
ILE
42
A
SER
43
n
43
SER
43
A
GLY
44
n
44
GLY
44
A
ASP
45
n
45
ASP
45
A
THR
46
n
46
THR
46
A
SER
47
n
47
SER
47
A
GLN
48
n
48
GLN
48
A
GLN
49
n
49
GLN
49
A
GLY
50
n
50
GLY
50
A
LEU
51
n
51
LEU
51
A
ALA
52
n
52
ALA
52
A
ARG
53
n
53
ARG
53
A
LEU
54
n
54
LEU
54
A
PRO
55
n
55
PRO
55
A
ALA
56
n
56
ALA
56
A
LEU
57
n
57
LEU
57
A
LEU
58
n
58
LEU
58
A
LYS
59
n
59
LYS
59
A
GLN
60
n
60
GLN
60
A
HIS
61
n
61
HIS
61
A
GLN
62
n
62
GLN
62
A
PRO
63
n
63
PRO
63
A
ARG
64
n
64
ARG
64
A
TRP
65
n
65
TRP
65
A
VAL
66
n
66
VAL
66
A
LEU
67
n
67
LEU
67
A
VAL
68
n
68
VAL
68
A
GLU
69
n
69
GLU
69
A
LEU
70
n
70
LEU
70
A
GLY
71
n
71
GLY
71
A
GLY
72
n
72
GLY
72
A
ASN
73
n
73
ASN
73
A
ASP
74
n
74
ASP
74
A
GLY
75
n
75
GLY
75
A
LEU
76
n
76
LEU
76
A
ARG
77
n
77
ARG
77
A
GLY
78
n
78
GLY
78
A
PHE
79
n
79
PHE
79
A
GLN
80
n
80
GLN
80
A
PRO
81
n
81
PRO
81
A
GLN
82
n
82
GLN
82
A
GLN
83
n
83
GLN
83
A
THR
84
n
84
THR
84
A
GLU
85
n
85
GLU
85
A
GLN
86
n
86
GLN
86
A
THR
87
n
87
THR
87
A
LEU
88
n
88
LEU
88
A
ARG
89
n
89
ARG
89
A
GLN
90
n
90
GLN
90
A
ILE
91
n
91
ILE
91
A
LEU
92
n
92
LEU
92
A
GLN
93
n
93
GLN
93
A
ASP
94
n
94
ASP
94
A
VAL
95
n
95
VAL
95
A
LYS
96
n
96
LYS
96
A
ALA
97
n
97
ALA
97
A
ALA
98
n
98
ALA
98
A
ASN
99
n
99
ASN
99
A
ALA
100
n
100
ALA
100
A
GLU
101
n
101
GLU
101
A
PRO
102
n
102
PRO
102
A
LEU
103
n
103
LEU
103
A
LEU
104
n
104
LEU
104
A
MET
105
n
105
MET
105
A
GLN
106
n
106
GLN
106
A
ILE
107
n
107
ILE
107
A
ARG
108
n
108
ARG
108
A
LEU
109
n
109
LEU
109
A
PRO
110
n
110
PRO
110
A
ALA
111
n
111
ALA
111
A
ASN
112
n
112
ASN
112
A
TYR
113
n
113
TYR
113
A
GLY
114
n
114
GLY
114
A
ARG
115
n
115
ARG
115
A
ARG
116
n
116
ARG
116
A
TYR
117
n
117
TYR
117
A
ASN
118
n
118
ASN
118
A
GLU
119
n
119
GLU
119
A
ALA
120
n
120
ALA
120
A
PHE
121
n
121
PHE
121
A
SER
122
n
122
SER
122
A
ALA
123
n
123
ALA
123
A
ILE
124
n
124
ILE
124
A
TYR
125
n
125
TYR
125
A
PRO
126
n
126
PRO
126
A
LYS
127
n
127
LYS
127
A
LEU
128
n
128
LEU
128
A
ALA
129
n
129
ALA
129
A
LYS
130
n
130
LYS
130
A
GLU
131
n
131
GLU
131
A
PHE
132
n
132
PHE
132
A
ASP
133
n
133
ASP
133
A
VAL
134
n
134
VAL
134
A
PRO
135
n
135
PRO
135
A
LEU
136
n
136
LEU
136
A
LEU
137
n
137
LEU
137
A
PRO
138
n
138
PRO
138
A
PHE
139
n
139
PHE
139
A
PHE
140
n
140
PHE
140
A
MET
141
n
141
MET
141
A
GLU
142
n
142
GLU
142
A
GLU
143
n
143
GLU
143
A
VAL
144
n
144
VAL
144
A
TYR
145
n
145
TYR
145
A
LEU
146
n
146
LEU
146
A
LYS
147
n
147
LYS
147
A
PRO
148
n
148
PRO
148
A
GLN
149
n
149
GLN
149
A
TRP
150
n
150
TRP
150
A
MET
151
n
151
MET
151
A
GLN
152
n
152
GLN
152
A
ASP
153
n
153
ASP
153
A
ASP
154
n
154
ASP
154
A
GLY
155
n
155
GLY
155
A
ILE
156
n
156
ILE
156
A
HIS
157
n
157
HIS
157
A
PRO
158
n
158
PRO
158
A
ASN
159
n
159
ASN
159
A
ARG
160
n
160
ARG
160
A
ASP
161
n
161
ASP
161
A
ALA
162
n
162
ALA
162
A
GLN
163
n
163
GLN
163
A
PRO
164
n
164
PRO
164
A
PHE
165
n
165
PHE
165
A
ILE
166
n
166
ILE
166
A
ALA
167
n
167
ALA
167
A
ASP
168
n
168
ASP
168
A
TRP
169
n
169
TRP
169
A
MET
170
n
170
MET
170
A
ALA
171
n
171
ALA
171
A
LYS
172
n
172
LYS
172
A
GLN
173
n
173
GLN
173
A
LEU
174
n
174
LEU
174
A
GLN
175
n
175
GLN
175
A
PRO
176
n
176
PRO
176
A
LEU
177
n
177
LEU
177
A
VAL
178
n
178
VAL
178
A
n
179
179
A
HIS
180
n
180
HIS
180
A
n
181
181
A
n
182
182
A
n
183
183
A
n
184
184
A
n
185
185
A
n
186
186
A
n
187
187
A
n
188
188
A
n
189
189
A
n
190
190
A
author_and_software_defined_assembly
PQS
1
monomeric
software_defined_assembly
PISA
2
dimeric
1320
-45
16730
A
SDP
10
A
SDP
10
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
49.9070000000
49.9070000000
85.9490000000
A
O
SER
36
A
O
SER
36
A
N
LEU
4
A
N
LEU
4
A
N
LEU
5
A
N
LEU
5
A
O
LEU
67
A
O
LEU
67
A
N
VAL
66
A
N
VAL
66
A
O
LEU
103
A
O
LEU
103
A
N
LEU
104
A
N
LEU
104
A
O
LEU
137
A
O
LEU
137
1
A
N
HIS
180
A
N
HIS
180
1
Y
1
A
CA
HIS
180
A
CA
HIS
180
1
Y
1
A
C
HIS
180
A
C
HIS
180
1
Y
1
A
O
HIS
180
A
O
HIS
180
1
Y
1
A
CB
HIS
180
A
CB
HIS
180
1
Y
1
A
GLN
32
A
GLN
32
1
Y
1
A
ASN
179
A
ASN
179
1
Y
1
A
ASP
181
A
ASP
181
1
Y
1
A
SER
182
A
SER
182
1
Y
1
A
LEU
183
A
LEU
183
1
Y
1
A
GLU
184
A
GLU
184
1
Y
1
A
HIS
185
A
HIS
185
1
Y
1
A
HIS
186
A
HIS
186
1
Y
1
A
HIS
187
A
HIS
187
1
Y
1
A
HIS
188
A
HIS
188
1
Y
1
A
HIS
189
A
HIS
189
1
Y
1
A
HIS
190
A
HIS
190
1
Y
1
A
A
O
O
HOH
HOH
1048
1086
2.10
1_555
8_665
1
A
ASP
9
-113.98
-151.42
1
A
LYS
34
-160.11
-109.72
1
A
ALA
40
-98.32
58.47
1
A
GLN
62
38.80
57.20
1
A
TYR
113
-143.44
-10.14
1
A
ARG
115
-56.86
-75.10
protein_rep.param
protein.top
water_rep.param
water.top
ion.param
ion.top
120.88
51.1
23.13
9.39
0.00
0.00
9.39
0.00
-18.78
0.267
0.008
0.239
2.00
27.27
1486
15517
14582
10.2
94.0
1.00
1.00
Random
1
anisotropic
THROUGHOUT
MOLECULAR REPLACEMENT
PDB ENTRY 1JRL
Engh & Huber
CNS bulk solvent model used
43.3515
0.354238
isotropic
isotropic
isotropic
0.33
0.27
5.00
0.27
0.25
2.00
2.00
27.27
91
1512
5
0
1416
0.006
1.1
21.8
0.85
1.86
1.50
3.18
2.00
2.16
2.00
3.29
2.50
0.353
0.022
0.31
2.13
216
2045
2495
2261
6
8.7
90.6
0.301
0.018
0.282
2.29
238
2135
2545
2373
6
9.4
93.2
0.331
0.017
0.266
2.52
248
2164
2538
2412
6
9.8
95.0
0.319
0.016
0.26
2.88
259
2229
2558
2488
6
10.1
97.3
0.285
0.015
0.242
3.63
257
2262
2609
2519
6
9.9
96.6
0.274
0.014
0.228
27.27
268
2261
2788
2529
6
9.6
90.7
28.3
2.00
27.27
1J00
24
0
17
0
85
0
15230
14582
1788436.90
0.320000
0.0
0.04
1
11.3
13.7
95.7
0.381
2.00
2.07
5.2
1
98.9
refinement
Axel T. Brunger
axel.brunger@@yale.edu
1998
Fortran
CNS
package
1.0
data reduction
XPRESS
data reduction
DIP2000
data scaling
SCALEPACK
phasing
CNS
E. coli Thioesterase I/Protease I/Lysophospholipase L1 in complexed with diethyl phosphono moiety
1
N
N
2
N
N
3
N
N
A
ASP
9
A
ASP
9
HELX_P
A
GLY
14
A
GLY
14
1
1
6
A
SER
18
A
SER
18
HELX_P
A
ALA
21
A
ALA
21
5
2
4
A
ALA
22
A
ALA
22
HELX_P
A
TRP
31
A
TRP
31
1
3
10
A
THR
46
A
THR
46
HELX_P
A
GLN
62
A
GLN
62
1
4
17
A
GLN
80
A
GLN
80
HELX_P
A
ALA
98
A
ALA
98
1
5
19
A
ARG
116
A
ARG
116
HELX_P
A
PHE
132
A
PHE
132
1
6
17
A
PHE
140
A
PHE
140
HELX_P
A
LEU
146
A
LEU
146
1
7
7
A
LYS
147
A
LYS
147
HELX_P
A
MET
151
A
MET
151
5
8
5
A
ASN
159
A
ASN
159
HELX_P
A
ASP
161
A
ASP
161
5
9
3
A
ALA
162
A
ALA
162
HELX_P
A
GLN
175
A
GLN
175
1
10
14
A
PRO
176
A
PRO
176
HELX_P
A
VAL
178
A
VAL
178
5
11
3
covale
1.336
both
A
ASP
9
A
C
ASP
9
1_555
A
SDP
10
A
N
SDP
10
1_555
covale
1.331
both
A
SDP
10
A
C
SDP
10
1_555
A
LEU
11
A
N
LEU
11
1_555
HYDROLASE
Hydrolase, Protease
TESA_ECOLI
UNP
1
27
P29679
ADTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQ
PQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEVYLKPQWMQDDGIHPNR
DAQPFIADWMAKQLQPLVNHDS
27
208
1J00
1
182
P29679
A
1
1
182
1
SER
modified residue
SDP
10
1J00
A
P29679
UNP
36
10
1
expression tag
LEU
183
1J00
A
P29679
UNP
183
1
expression tag
GLU
184
1J00
A
P29679
UNP
184
1
expression tag
HIS
185
1J00
A
P29679
UNP
185
1
expression tag
HIS
186
1J00
A
P29679
UNP
186
1
expression tag
HIS
187
1J00
A
P29679
UNP
187
1
expression tag
HIS
188
1J00
A
P29679
UNP
188
1
expression tag
HIS
189
1J00
A
P29679
UNP
189
1
expression tag
HIS
190
1J00
A
P29679
UNP
190
5
parallel
parallel
parallel
parallel
A
SER
36
A
SER
36
A
SER
41
A
SER
41
A
THR
3
A
THR
3
A
GLY
8
A
GLY
8
A
TRP
65
A
TRP
65
A
GLU
69
A
GLU
69
A
GLU
101
A
GLU
101
A
MET
105
A
MET
105
A
LEU
136
A
LEU
136
A
LEU
137
A
LEU
137
BINDING SITE FOR RESIDUE SO4 A 501
A
SO4
501
Software
7
A
MET
17
A
MET
17
7
1_555
A
SER
18
A
SER
18
7
1_555
A
ALA
21
A
ALA
21
7
1_555
A
ARG
53
A
ARG
53
7
8_665
A
LEU
57
A
LEU
57
7
8_665
A
ARG
160
A
ARG
160
7
1_555
A
HOH
1028
C
HOH
7
8_665
96
P 43 21 2