0.012642
0.000000
0.000000
0.000000
0.011723
0.000000
0.000000
0.000000
0.010811
0.000000
0.000000
0.000000
Watanabe, K.
Sato, E.
Honjo, E.
Motoshima, H.
Kurokawa, H.
Mikami, B.
Monzingo, A.F.
Robertus, J.D.
Fujii, H.
Hidaka, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
79.100
85.300
92.500
C5 H5 N5
135.127
ADENINE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
N
Y
2
N
C
Y
3
N
N
Y
4
N
C
Y
5
N
C
N
6
N
N
Y
7
N
N
Y
8
N
C
Y
9
N
N
Y
10
N
C
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
N
N
17
S
C
N
18
N
C
N
19
N
O
N
20
N
C
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
N
N
30
S
C
N
31
N
C
N
32
N
O
N
33
N
C
N
34
N
C
N
35
N
C
N
36
N
N
N
37
N
C
N
38
N
N
N
39
N
N
N
40
N
O
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
O
N
63
N
N
N
64
N
O
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
N
N
74
S
C
N
75
N
C
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
O
N
80
N
O
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
R
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
S
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
S
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
C
N
109
N
C
N
110
N
O
N
111
N
N
N
112
N
O
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
N
C
N
144
N
C
N
145
N
O
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
S
C
N
154
N
C
N
155
N
O
N
156
N
C
Y
157
N
C
Y
158
N
N
Y
159
N
C
Y
160
N
C
Y
161
N
N
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
S
C
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
N
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
S
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
R
C
N
266
R
C
N
267
R
C
N
268
S
C
N
269
R
C
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
N
N
274
N
O
N
275
N
O
N
276
N
O
N
277
N
O
N
278
N
O
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
R
C
N
354
N
O
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
N
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
Y
1
N
sing
Y
2
N
sing
N
3
N
sing
Y
4
N
doub
N
5
N
sing
Y
6
N
sing
Y
7
N
sing
Y
8
N
doub
N
9
N
sing
Y
10
N
doub
N
11
N
sing
N
12
N
sing
Y
13
N
sing
Y
14
N
doub
N
15
N
sing
Y
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
doub
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
doub
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
Y
156
N
sing
Y
157
N
doub
Y
158
N
doub
N
159
N
sing
Y
160
N
sing
N
161
N
sing
Y
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
Y
294
N
doub
Y
295
N
sing
Y
296
N
sing
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
To be published
0353
Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution
10.2210/pdb1j1r/pdb
pdb_00001j1r
278
1
DIFFRACTOMETER
WEISSENBERG
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
BL-6B
Photon Factory
1.00
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6B
29234.373
Antiviral Protein S
3.2.2.22
1
nat
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
135.127
ADENINE
1
syn
non-polymer
18.015
water
203
nat
water
Pokeweed Antiviral Protein, PAP-S1, N-Glycosidase
no
no
INTITFDAGNATINKYATFMESLRNEAKDPSLKCYGIPMLPNTNSTIKYLLVKLQGASLKTITLMLRRNNLYVMGYSDPY
DNKCRYHIFNDIKGTEYSDVENTLCPSSNPRVAKPINYNGLYPTLEKKAGVTSRNEVQLGIQILSSDIGKISGQGSFTEK
IEAKFLLVAIQMVSEAARFKYIENQVKTNFNRDFSPNDKVLDLEENWGKISTAIHNSKNGALPKPLELKNADGTKWIVLR
VDEIKPDVGLLNYVNGTCQAT
INTITFDAGNATINKYATFMESLRNEAKDPSLKCYGIPMLPNTNSTIKYLLVKLQGASLKTITLMLRRNNLYVMGYSDPY
DNKCRYHIFNDIKGTEYSDVENTLCPSSNPRVAKPINYNGLYPTLEKKAGVTSRNEVQLGIQILSSDIGKISGQGSFTEK
IEAKFLLVAIQMVSEAARFKYIENQVKTNFNRDFSPNDKVLDLEENWGKISTAIHNSKNGALPKPLELKNADGTKWIVLR
VDEIKPDVGLLNYVNGTCQAT
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
American pokeweed
Phytolacca
sample
3527
Phytolacca americana
seeds
1
2.44
49.28
VAPOR DIFFUSION, HANGING DROP
6.5
66% Saturated Ammomium Sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Data collection
Derived calculations
Structure summary
Data collection
Database references
Structure summary
1
0
2004-02-03
1
1
2008-04-27
1
2
2011-07-13
1
3
2020-07-29
1
4
2023-12-27
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
1J1Q complexed with NAG
1J1S complexed with NAG and FMP
PDBJ
Y
PDBJ
2002-12-14
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
ADE
ADENINE
HOH
water
NAG
601
2
NAG
NAG
601
A
ANE
701
3
ADE
ADE
701
A
HOH
301
4
HOH
HOH
301
A
HOH
302
4
HOH
HOH
302
A
HOH
303
4
HOH
HOH
303
A
HOH
304
4
HOH
HOH
304
A
HOH
305
4
HOH
HOH
305
A
HOH
306
4
HOH
HOH
306
A
HOH
307
4
HOH
HOH
307
A
HOH
308
4
HOH
HOH
308
A
HOH
309
4
HOH
HOH
309
A
HOH
310
4
HOH
HOH
310
A
HOH
311
4
HOH
HOH
311
A
HOH
312
4
HOH
HOH
312
A
HOH
313
4
HOH
HOH
313
A
HOH
314
4
HOH
HOH
314
A
HOH
315
4
HOH
HOH
315
A
HOH
316
4
HOH
HOH
316
A
HOH
317
4
HOH
HOH
317
A
HOH
318
4
HOH
HOH
318
A
HOH
319
4
HOH
HOH
319
A
HOH
320
4
HOH
HOH
320
A
HOH
321
4
HOH
HOH
321
A
HOH
322
4
HOH
HOH
322
A
HOH
323
4
HOH
HOH
323
A
HOH
324
4
HOH
HOH
324
A
HOH
325
4
HOH
HOH
325
A
HOH
326
4
HOH
HOH
326
A
HOH
327
4
HOH
HOH
327
A
HOH
328
4
HOH
HOH
328
A
HOH
329
4
HOH
HOH
329
A
HOH
330
4
HOH
HOH
330
A
HOH
331
4
HOH
HOH
331
A
HOH
332
4
HOH
HOH
332
A
HOH
333
4
HOH
HOH
333
A
HOH
334
4
HOH
HOH
334
A
HOH
335
4
HOH
HOH
335
A
HOH
336
4
HOH
HOH
336
A
HOH
337
4
HOH
HOH
337
A
HOH
338
4
HOH
HOH
338
A
HOH
339
4
HOH
HOH
339
A
HOH
340
4
HOH
HOH
340
A
HOH
341
4
HOH
HOH
341
A
HOH
342
4
HOH
HOH
342
A
HOH
343
4
HOH
HOH
343
A
HOH
344
4
HOH
HOH
344
A
HOH
345
4
HOH
HOH
345
A
HOH
346
4
HOH
HOH
346
A
HOH
347
4
HOH
HOH
347
A
HOH
348
4
HOH
HOH
348
A
HOH
349
4
HOH
HOH
349
A
HOH
350
4
HOH
HOH
350
A
HOH
351
4
HOH
HOH
351
A
HOH
352
4
HOH
HOH
352
A
HOH
353
4
HOH
HOH
353
A
HOH
354
4
HOH
HOH
354
A
HOH
355
4
HOH
HOH
355
A
HOH
356
4
HOH
HOH
356
A
HOH
357
4
HOH
HOH
357
A
HOH
358
4
HOH
HOH
358
A
HOH
359
4
HOH
HOH
359
A
HOH
360
4
HOH
HOH
360
A
HOH
361
4
HOH
HOH
361
A
HOH
362
4
HOH
HOH
362
A
HOH
363
4
HOH
HOH
363
A
HOH
364
4
HOH
HOH
364
A
HOH
365
4
HOH
HOH
365
A
HOH
366
4
HOH
HOH
366
A
HOH
367
4
HOH
HOH
367
A
HOH
368
4
HOH
HOH
368
A
HOH
369
4
HOH
HOH
369
A
HOH
370
4
HOH
HOH
370
A
HOH
371
4
HOH
HOH
371
A
HOH
372
4
HOH
HOH
372
A
HOH
373
4
HOH
HOH
373
A
HOH
374
4
HOH
HOH
374
A
HOH
375
4
HOH
HOH
375
A
HOH
376
4
HOH
HOH
376
A
HOH
377
4
HOH
HOH
377
A
HOH
378
4
HOH
HOH
378
A
HOH
379
4
HOH
HOH
379
A
HOH
380
4
HOH
HOH
380
A
HOH
381
4
HOH
HOH
381
A
HOH
382
4
HOH
HOH
382
A
HOH
383
4
HOH
HOH
383
A
HOH
384
4
HOH
HOH
384
A
HOH
385
4
HOH
HOH
385
A
HOH
386
4
HOH
HOH
386
A
HOH
387
4
HOH
HOH
387
A
HOH
388
4
HOH
HOH
388
A
HOH
389
4
HOH
HOH
389
A
HOH
390
4
HOH
HOH
390
A
HOH
391
4
HOH
HOH
391
A
HOH
392
4
HOH
HOH
392
A
HOH
393
4
HOH
HOH
393
A
HOH
394
4
HOH
HOH
394
A
HOH
395
4
HOH
HOH
395
A
HOH
396
4
HOH
HOH
396
A
HOH
397
4
HOH
HOH
397
A
HOH
398
4
HOH
HOH
398
A
HOH
399
4
HOH
HOH
399
A
HOH
400
4
HOH
HOH
400
A
HOH
401
4
HOH
HOH
401
A
HOH
402
4
HOH
HOH
402
A
HOH
403
4
HOH
HOH
403
A
HOH
404
4
HOH
HOH
404
A
HOH
405
4
HOH
HOH
405
A
HOH
406
4
HOH
HOH
406
A
HOH
407
4
HOH
HOH
407
A
HOH
408
4
HOH
HOH
408
A
HOH
409
4
HOH
HOH
409
A
HOH
410
4
HOH
HOH
410
A
HOH
411
4
HOH
HOH
411
A
HOH
412
4
HOH
HOH
412
A
HOH
413
4
HOH
HOH
413
A
HOH
414
4
HOH
HOH
414
A
HOH
415
4
HOH
HOH
415
A
HOH
416
4
HOH
HOH
416
A
HOH
417
4
HOH
HOH
417
A
HOH
418
4
HOH
HOH
418
A
HOH
419
4
HOH
HOH
419
A
HOH
420
4
HOH
HOH
420
A
HOH
421
4
HOH
HOH
421
A
HOH
422
4
HOH
HOH
422
A
HOH
423
4
HOH
HOH
423
A
HOH
424
4
HOH
HOH
424
A
HOH
425
4
HOH
HOH
425
A
HOH
426
4
HOH
HOH
426
A
HOH
427
4
HOH
HOH
427
A
HOH
428
4
HOH
HOH
428
A
HOH
429
4
HOH
HOH
429
A
HOH
430
4
HOH
HOH
430
A
HOH
431
4
HOH
HOH
431
A
HOH
432
4
HOH
HOH
432
A
HOH
433
4
HOH
HOH
433
A
HOH
434
4
HOH
HOH
434
A
HOH
435
4
HOH
HOH
435
A
HOH
436
4
HOH
HOH
436
A
HOH
437
4
HOH
HOH
437
A
HOH
438
4
HOH
HOH
438
A
HOH
439
4
HOH
HOH
439
A
HOH
440
4
HOH
HOH
440
A
HOH
441
4
HOH
HOH
441
A
HOH
442
4
HOH
HOH
442
A
HOH
443
4
HOH
HOH
443
A
HOH
444
4
HOH
HOH
444
A
HOH
445
4
HOH
HOH
445
A
HOH
446
4
HOH
HOH
446
A
HOH
447
4
HOH
HOH
447
A
HOH
448
4
HOH
HOH
448
A
HOH
449
4
HOH
HOH
449
A
HOH
450
4
HOH
HOH
450
A
HOH
451
4
HOH
HOH
451
A
HOH
452
4
HOH
HOH
452
A
HOH
453
4
HOH
HOH
453
A
HOH
454
4
HOH
HOH
454
A
HOH
455
4
HOH
HOH
455
A
HOH
456
4
HOH
HOH
456
A
HOH
457
4
HOH
HOH
457
A
HOH
458
4
HOH
HOH
458
A
HOH
459
4
HOH
HOH
459
A
HOH
460
4
HOH
HOH
460
A
HOH
461
4
HOH
HOH
461
A
HOH
462
4
HOH
HOH
462
A
HOH
463
4
HOH
HOH
463
A
HOH
464
4
HOH
HOH
464
A
HOH
465
4
HOH
HOH
465
A
HOH
466
4
HOH
HOH
466
A
HOH
467
4
HOH
HOH
467
A
HOH
468
4
HOH
HOH
468
A
HOH
469
4
HOH
HOH
469
A
HOH
470
4
HOH
HOH
470
A
HOH
471
4
HOH
HOH
471
A
HOH
472
4
HOH
HOH
472
A
HOH
473
4
HOH
HOH
473
A
HOH
474
4
HOH
HOH
474
A
HOH
475
4
HOH
HOH
475
A
HOH
476
4
HOH
HOH
476
A
HOH
477
4
HOH
HOH
477
A
HOH
478
4
HOH
HOH
478
A
HOH
479
4
HOH
HOH
479
A
HOH
480
4
HOH
HOH
480
A
HOH
481
4
HOH
HOH
481
A
HOH
482
4
HOH
HOH
482
A
HOH
483
4
HOH
HOH
483
A
HOH
484
4
HOH
HOH
484
A
HOH
485
4
HOH
HOH
485
A
HOH
486
4
HOH
HOH
486
A
HOH
487
4
HOH
HOH
487
A
HOH
488
4
HOH
HOH
488
A
HOH
489
4
HOH
HOH
489
A
HOH
490
4
HOH
HOH
490
A
HOH
491
4
HOH
HOH
491
A
HOH
492
4
HOH
HOH
492
A
HOH
493
4
HOH
HOH
493
A
HOH
494
4
HOH
HOH
494
A
HOH
495
4
HOH
HOH
495
A
HOH
496
4
HOH
HOH
496
A
HOH
497
4
HOH
HOH
497
A
HOH
498
4
HOH
HOH
498
A
HOH
499
4
HOH
HOH
499
A
HOH
500
4
HOH
HOH
500
A
HOH
501
4
HOH
HOH
501
A
HOH
502
4
HOH
HOH
502
A
HOH
503
4
HOH
HOH
503
A
ILE
1
n
1
ILE
1
A
ASN
2
n
2
ASN
2
A
THR
3
n
3
THR
3
A
ILE
4
n
4
ILE
4
A
THR
5
n
5
THR
5
A
PHE
6
n
6
PHE
6
A
ASP
7
n
7
ASP
7
A
ALA
8
n
8
ALA
8
A
GLY
9
n
9
GLY
9
A
ASN
10
n
10
ASN
10
A
ALA
11
n
11
ALA
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
ASN
14
n
14
ASN
14
A
LYS
15
n
15
LYS
15
A
TYR
16
n
16
TYR
16
A
ALA
17
n
17
ALA
17
A
THR
18
n
18
THR
18
A
PHE
19
n
19
PHE
19
A
MET
20
n
20
MET
20
A
GLU
21
n
21
GLU
21
A
SER
22
n
22
SER
22
A
LEU
23
n
23
LEU
23
A
ARG
24
n
24
ARG
24
A
ASN
25
n
25
ASN
25
A
GLU
26
n
26
GLU
26
A
ALA
27
n
27
ALA
27
A
LYS
28
n
28
LYS
28
A
ASP
29
n
29
ASP
29
A
PRO
30
n
30
PRO
30
A
SER
31
n
31
SER
31
A
LEU
32
n
32
LEU
32
A
LYS
33
n
33
LYS
33
A
CYS
34
n
34
CYS
34
A
TYR
35
n
35
TYR
35
A
GLY
36
n
36
GLY
36
A
ILE
37
n
37
ILE
37
A
PRO
38
n
38
PRO
38
A
MET
39
n
39
MET
39
A
LEU
40
n
40
LEU
40
A
PRO
41
n
41
PRO
41
A
ASN
42
n
42
ASN
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
SER
45
n
45
SER
45
A
THR
46
n
46
THR
46
A
ILE
47
n
47
ILE
47
A
LYS
48
n
48
LYS
48
A
TYR
49
n
49
TYR
49
A
LEU
50
n
50
LEU
50
A
LEU
51
n
51
LEU
51
A
VAL
52
n
52
VAL
52
A
LYS
53
n
53
LYS
53
A
LEU
54
n
54
LEU
54
A
GLN
55
n
55
GLN
55
A
GLY
56
n
56
GLY
56
A
ALA
57
n
57
ALA
57
A
SER
58
n
58
SER
58
A
LEU
59
n
59
LEU
59
A
LYS
60
n
60
LYS
60
A
THR
61
n
61
THR
61
A
ILE
62
n
62
ILE
62
A
THR
63
n
63
THR
63
A
LEU
64
n
64
LEU
64
A
MET
65
n
65
MET
65
A
LEU
66
n
66
LEU
66
A
ARG
67
n
67
ARG
67
A
ARG
68
n
68
ARG
68
A
ASN
69
n
69
ASN
69
A
ASN
70
n
70
ASN
70
A
LEU
71
n
71
LEU
71
A
TYR
72
n
72
TYR
72
A
VAL
73
n
73
VAL
73
A
MET
74
n
74
MET
74
A
GLY
75
n
75
GLY
75
A
TYR
76
n
76
TYR
76
A
SER
77
n
77
SER
77
A
ASP
78
n
78
ASP
78
A
PRO
79
n
79
PRO
79
A
TYR
80
n
80
TYR
80
A
ASP
81
n
81
ASP
81
A
ASN
82
n
82
ASN
82
A
LYS
83
n
83
LYS
83
A
CYS
84
n
84
CYS
84
A
ARG
85
n
85
ARG
85
A
TYR
86
n
86
TYR
86
A
HIS
87
n
87
HIS
87
A
ILE
88
n
88
ILE
88
A
PHE
89
n
89
PHE
89
A
ASN
90
n
90
ASN
90
A
ASP
91
n
91
ASP
91
A
ILE
92
n
92
ILE
92
A
LYS
93
n
93
LYS
93
A
GLY
94
n
94
GLY
94
A
THR
95
n
95
THR
95
A
GLU
96
n
96
GLU
96
A
TYR
97
n
97
TYR
97
A
SER
98
n
98
SER
98
A
ASP
99
n
99
ASP
99
A
VAL
100
n
100
VAL
100
A
GLU
101
n
101
GLU
101
A
ASN
102
n
102
ASN
102
A
THR
103
n
103
THR
103
A
LEU
104
n
104
LEU
104
A
CYS
105
n
105
CYS
105
A
PRO
106
n
106
PRO
106
A
SER
107
n
107
SER
107
A
SER
108
n
108
SER
108
A
ASN
109
n
109
ASN
109
A
PRO
110
n
110
PRO
110
A
ARG
111
n
111
ARG
111
A
VAL
112
n
112
VAL
112
A
ALA
113
n
113
ALA
113
A
LYS
114
n
114
LYS
114
A
PRO
115
n
115
PRO
115
A
ILE
116
n
116
ILE
116
A
ASN
117
n
117
ASN
117
A
TYR
118
n
118
TYR
118
A
ASN
119
n
119
ASN
119
A
GLY
120
n
120
GLY
120
A
LEU
121
n
121
LEU
121
A
TYR
122
n
122
TYR
122
A
PRO
123
n
123
PRO
123
A
THR
124
n
124
THR
124
A
LEU
125
n
125
LEU
125
A
GLU
126
n
126
GLU
126
A
LYS
127
n
127
LYS
127
A
LYS
128
n
128
LYS
128
A
ALA
129
n
129
ALA
129
A
GLY
130
n
130
GLY
130
A
VAL
131
n
131
VAL
131
A
THR
132
n
132
THR
132
A
SER
133
n
133
SER
133
A
ARG
134
n
134
ARG
134
A
ASN
135
n
135
ASN
135
A
GLU
136
n
136
GLU
136
A
VAL
137
n
137
VAL
137
A
GLN
138
n
138
GLN
138
A
LEU
139
n
139
LEU
139
A
GLY
140
n
140
GLY
140
A
ILE
141
n
141
ILE
141
A
GLN
142
n
142
GLN
142
A
ILE
143
n
143
ILE
143
A
LEU
144
n
144
LEU
144
A
SER
145
n
145
SER
145
A
SER
146
n
146
SER
146
A
ASP
147
n
147
ASP
147
A
ILE
148
n
148
ILE
148
A
GLY
149
n
149
GLY
149
A
LYS
150
n
150
LYS
150
A
ILE
151
n
151
ILE
151
A
SER
152
n
152
SER
152
A
GLY
153
n
153
GLY
153
A
GLN
154
n
154
GLN
154
A
GLY
155
n
155
GLY
155
A
SER
156
n
156
SER
156
A
PHE
157
n
157
PHE
157
A
THR
158
n
158
THR
158
A
GLU
159
n
159
GLU
159
A
LYS
160
n
160
LYS
160
A
ILE
161
n
161
ILE
161
A
GLU
162
n
162
GLU
162
A
ALA
163
n
163
ALA
163
A
LYS
164
n
164
LYS
164
A
PHE
165
n
165
PHE
165
A
LEU
166
n
166
LEU
166
A
LEU
167
n
167
LEU
167
A
VAL
168
n
168
VAL
168
A
ALA
169
n
169
ALA
169
A
ILE
170
n
170
ILE
170
A
GLN
171
n
171
GLN
171
A
MET
172
n
172
MET
172
A
VAL
173
n
173
VAL
173
A
SER
174
n
174
SER
174
A
GLU
175
n
175
GLU
175
A
ALA
176
n
176
ALA
176
A
ALA
177
n
177
ALA
177
A
ARG
178
n
178
ARG
178
A
PHE
179
n
179
PHE
179
A
LYS
180
n
180
LYS
180
A
TYR
181
n
181
TYR
181
A
ILE
182
n
182
ILE
182
A
GLU
183
n
183
GLU
183
A
ASN
184
n
184
ASN
184
A
GLN
185
n
185
GLN
185
A
VAL
186
n
186
VAL
186
A
LYS
187
n
187
LYS
187
A
THR
188
n
188
THR
188
A
ASN
189
n
189
ASN
189
A
PHE
190
n
190
PHE
190
A
ASN
191
n
191
ASN
191
A
ARG
192
n
192
ARG
192
A
ASP
193
n
193
ASP
193
A
PHE
194
n
194
PHE
194
A
SER
195
n
195
SER
195
A
PRO
196
n
196
PRO
196
A
ASN
197
n
197
ASN
197
A
ASP
198
n
198
ASP
198
A
LYS
199
n
199
LYS
199
A
VAL
200
n
200
VAL
200
A
LEU
201
n
201
LEU
201
A
ASP
202
n
202
ASP
202
A
LEU
203
n
203
LEU
203
A
GLU
204
n
204
GLU
204
A
GLU
205
n
205
GLU
205
A
ASN
206
n
206
ASN
206
A
TRP
207
n
207
TRP
207
A
GLY
208
n
208
GLY
208
A
LYS
209
n
209
LYS
209
A
ILE
210
n
210
ILE
210
A
SER
211
n
211
SER
211
A
THR
212
n
212
THR
212
A
ALA
213
n
213
ALA
213
A
ILE
214
n
214
ILE
214
A
HIS
215
n
215
HIS
215
A
ASN
216
n
216
ASN
216
A
SER
217
n
217
SER
217
A
LYS
218
n
218
LYS
218
A
ASN
219
n
219
ASN
219
A
GLY
220
n
220
GLY
220
A
ALA
221
n
221
ALA
221
A
LEU
222
n
222
LEU
222
A
PRO
223
n
223
PRO
223
A
LYS
224
n
224
LYS
224
A
PRO
225
n
225
PRO
225
A
LEU
226
n
226
LEU
226
A
GLU
227
n
227
GLU
227
A
LEU
228
n
228
LEU
228
A
LYS
229
n
229
LYS
229
A
ASN
230
n
230
ASN
230
A
ALA
231
n
231
ALA
231
A
ASP
232
n
232
ASP
232
A
GLY
233
n
233
GLY
233
A
THR
234
n
234
THR
234
A
LYS
235
n
235
LYS
235
A
TRP
236
n
236
TRP
236
A
ILE
237
n
237
ILE
237
A
VAL
238
n
238
VAL
238
A
LEU
239
n
239
LEU
239
A
ARG
240
n
240
ARG
240
A
VAL
241
n
241
VAL
241
A
ASP
242
n
242
ASP
242
A
GLU
243
n
243
GLU
243
A
ILE
244
n
244
ILE
244
A
LYS
245
n
245
LYS
245
A
PRO
246
n
246
PRO
246
A
ASP
247
n
247
ASP
247
A
VAL
248
n
248
VAL
248
A
GLY
249
n
249
GLY
249
A
LEU
250
n
250
LEU
250
A
LEU
251
n
251
LEU
251
A
ASN
252
n
252
ASN
252
A
TYR
253
n
253
TYR
253
A
VAL
254
n
254
VAL
254
A
ASN
255
n
255
ASN
255
A
GLY
256
n
256
GLY
256
A
THR
257
n
257
THR
257
A
CYS
258
n
258
CYS
258
A
GLN
259
n
259
GLN
259
A
ALA
260
n
260
ALA
260
A
THR
261
n
261
THR
261
A
author_defined_assembly
1
monomeric
A
ASN
255
GLYCOSYLATION SITE
A
ASN
255
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
4
A
N
ILE
4
A
O
LEU
51
A
O
LEU
51
A
N
VAL
52
A
N
VAL
52
A
O
LEU
64
A
O
LEU
64
A
N
MET
65
A
N
MET
65
A
O
MET
74
A
O
MET
74
A
N
TYR
76
A
N
TYR
76
A
O
HIS
87
A
O
HIS
87
A
N
TYR
86
A
N
TYR
86
A
O
VAL
112
A
O
VAL
112
A
N
CYS
34
A
N
CYS
34
A
O
ILE
37
A
O
ILE
37
A
N
LEU
228
A
N
LEU
228
A
O
TRP
236
A
O
TRP
236
1
A
HOH
428
D
HOH
1
A
HOH
429
D
HOH
1
A
HOH
430
D
HOH
1
3.60
0.50
120.30
123.90
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
67
67
67
N
1
-6.79
0.50
120.30
113.51
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
67
67
67
N
1
-11.49
1.60
100.20
88.71
A
A
A
CG
SD
CE
MET
MET
MET
74
74
74
N
1
3.60
0.50
120.30
123.90
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
85
85
85
N
1
4.28
0.50
120.30
124.58
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
111
111
111
N
1
-3.20
0.50
120.30
117.10
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
111
111
111
N
1
5.68
0.80
106.30
111.98
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
207
207
207
N
1
-4.85
0.80
107.30
102.45
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
207
207
207
N
1
5.77
0.80
106.30
112.07
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
236
236
236
N
1
-5.34
0.80
107.30
101.96
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
236
236
236
N
1
A
A
NE2
CD2
HIS
HIS
87
87
-0.073
0.011
1.373
1.300
N
1
A
LYS
33
-170.64
144.28
1
A
ASN
70
-141.07
11.34
1
A
ASN
90
-67.43
2.89
1
A
ASN
117
-88.28
48.60
1
A
VAL
173
-115.83
-72.19
1
A
ASN
189
-94.66
34.73
1
A
LEU
228
-117.01
-163.68
protein_rep.param
protein.top
water_rep.param
water.top
carbohydrate.param
carbohydrate.top
ane.param
ane.top
69.45
19.88
6.26
0.39
0.00
0.00
-.96
0.00
0.56
0.228
0.005
0.168
1.90
10.00
2262
24818
22896
9.9
92.3
1.00
0.50
random
1
THROUGHOUT
MOLECULAR REPLACEMENT
CNS bulk solvent model used
67.3406
0.303524
0.24
0.18
5.00
0.15
0.19
1.90
1.90
10.00
203
2280
24
0
2053
0.017
2.7
23.9
1.14
0.238
0.016
0.223
1.99
232
2058
3053
2290
8
10.1
75.0
0.233
0.014
0.205
2.09
267
2307
3080
2574
8
10.4
83.5
0.248
0.016
0.204
2.22
246
2539
3058
2785
8
8.8
91.0
0.239
0.015
0.19
2.39
270
2682
3104
2952
8
9.1
95.1
0.241
0.014
0.183
2.62
307
2669
3082
2976
8
10.3
96.6
0.264
0.015
0.181
3.00
327
2711
3113
3038
8
10.8
97.6
0.215
0.012
0.144
3.74
302
2804
3137
3106
8
9.7
99.0
0.199
0.011
0.133
10.00
311
2864
3221
3175
8
9.8
98.5
10.8
1.80
10.00
1J1R
43
0
47
0
51
0
25611
22896
1874625.79
30.261000
0.0
1
refinement
Axel T. Brunger
axel.brunger@@yale.edu
1998
Fortran
CNS
package
1.1
phasing
X-PLOR
refinement
X-PLOR
3.1
Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Adenine
1
N
N
2
N
N
3
N
N
4
N
N
A
THR
12
A
THR
12
HELX_P
A
LYS
28
A
LYS
28
1
1
17
A
LYS
93
A
LYS
93
HELX_P
A
CYS
105
A
CYS
105
1
2
13
A
LEU
121
A
LEU
121
HELX_P
A
GLY
130
A
GLY
130
1
3
10
A
SER
133
A
SER
133
HELX_P
A
VAL
137
A
VAL
137
5
4
5
A
GLY
140
A
GLY
140
HELX_P
A
SER
152
A
SER
152
1
5
13
A
THR
158
A
THR
158
HELX_P
A
VAL
173
A
VAL
173
1
6
16
A
VAL
173
A
VAL
173
HELX_P
A
PHE
179
A
PHE
179
1
7
7
A
PHE
179
A
PHE
179
HELX_P
A
ASN
189
A
ASN
189
1
8
11
A
ASN
197
A
ASN
197
HELX_P
A
ASN
206
A
ASN
206
1
9
10
A
ASN
206
A
ASN
206
HELX_P
A
SER
217
A
SER
217
1
10
12
A
VAL
241
A
VAL
241
HELX_P
A
LYS
245
A
LYS
245
1
11
5
A
PRO
246
A
PRO
246
HELX_P
A
VAL
248
A
VAL
248
5
12
3
disulf
2.009
A
CYS
34
A
SG
CYS
34
1_555
A
CYS
258
A
SG
CYS
258
1_555
disulf
1.967
A
CYS
84
A
SG
CYS
84
1_555
A
CYS
105
A
SG
CYS
105
1_555
covale
1.443
one
N-Glycosylation
A
ASN
255
A
ND2
ASN
255
1_555
A
NAG
601
B
C1
NAG
1_555
HYDROLASE
POKEWEED ANTIVIRAL PROTEIN, N-GLYCOSIDASE, RIBOSOME-INACTIVATING PROTEIN, HYDROLASE
RIPS_PHYAM
UNP
1
1
P23339
INTITFDAGNATINKYATFMESLRNEAKDPSLKCYGIPMLPNTNSTIKYLLVKLQGASLKTITLMLRRNNLYVMGYSDPY
DNKCRYHIFNDIKGTEYSDVENTLCPSSNPRVAKPINYNGLYPTLEKKAGVTSRNEVQLGIQILSSDIGKISGQGSFTEK
IEAKFLLVAIQMVSEAARFKYIENQVKTNFNRDFSPNDKVLDLEENWGKISTAIHNSKNGALPKPLELKNADGTKWIVLR
VDEIKPDVGLLNYVNGTCQAT
1
261
1J1R
1
261
P23339
A
1
1
261
6
2
2
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ILE
4
A
ILE
4
A
ASP
7
A
ASP
7
A
TYR
49
A
TYR
49
A
GLN
55
A
GLN
55
A
THR
61
A
THR
61
A
ARG
67
A
ARG
67
A
TYR
72
A
TYR
72
A
TYR
80
A
TYR
80
A
LYS
83
A
LYS
83
A
ILE
88
A
ILE
88
A
ARG
111
A
ARG
111
A
ALA
113
A
ALA
113
A
LYS
33
A
LYS
33
A
CYS
34
A
CYS
34
A
ILE
37
A
ILE
37
A
PRO
38
A
PRO
38
A
ALA
221
A
ALA
221
A
LYS
229
A
LYS
229
A
LYS
235
A
LYS
235
A
ARG
240
A
ARG
240
23
I 2 2 2