0.012642 0.000000 0.000000 0.000000 0.011723 0.000000 0.000000 0.000000 0.010811 0.000000 0.000000 0.000000 Watanabe, K. Sato, E. Honjo, E. Motoshima, H. Kurokawa, H. Mikami, B. Monzingo, A.F. Robertus, J.D. Fujii, H. Hidaka, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 79.100 85.300 92.500 C5 H5 N5 135.127 ADENINE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Y 1 N N Y 2 N C Y 3 N N Y 4 N C Y 5 N C N 6 N N Y 7 N N Y 8 N C Y 9 N N Y 10 N C N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N N N 17 S C N 18 N C N 19 N O N 20 N C N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N N N 30 S C N 31 N C N 32 N O N 33 N C N 34 N C N 35 N C N 36 N N N 37 N C N 38 N N N 39 N N N 40 N O N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N N N 57 S C N 58 N C N 59 N O N 60 N C N 61 N C N 62 N O N 63 N N N 64 N O N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N N N 74 S C N 75 N C N 76 N O N 77 N C N 78 N C N 79 N O N 80 N O N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 R C N 91 N C N 92 N O N 93 N C N 94 N S N 95 N O N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N N N 104 S C N 105 N C N 106 N O N 107 N C N 108 N C N 109 N C N 110 N O N 111 N N N 112 N O N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C N 128 N C N 129 N C N 130 N O N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N N N 143 N C N 144 N C N 145 N O N 146 N O N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N N N 153 S C N 154 N C N 155 N O N 156 N C Y 157 N C Y 158 N N Y 159 N C Y 160 N C Y 161 N N N 162 N O N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N O N 174 N H N 175 N H N 176 N N N 177 S C N 178 N C N 179 N O N 180 S C N 181 N C N 182 N C N 183 N C N 184 N O N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C N 203 N C N 204 N C N 205 N C N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N N N 221 S C N 222 N C N 223 N O N 224 N C N 225 N C N 226 N C N 227 N C N 228 N N N 229 N O N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N N N 246 S C N 247 N C N 248 N O N 249 N C N 250 N C N 251 N S N 252 N C N 253 N O N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 R C N 266 R C N 267 R C N 268 S C N 269 R C N 270 N C N 271 N C N 272 N C N 273 N N N 274 N O N 275 N O N 276 N O N 277 N O N 278 N O N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C Y 300 N C Y 301 N C Y 302 N C Y 303 N C Y 304 N C Y 305 N C N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C N 323 N C N 324 N C N 325 N O N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C N 340 N O N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 R C N 354 N O N 355 N C N 356 N O N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N N N 367 S C N 368 N C N 369 N O N 370 N C Y 371 N C Y 372 N C Y 373 N C Y 374 N N Y 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N O N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N N N 418 S C N 419 N C N 420 N O N 421 N C N 422 N C N 423 N C N 424 N O N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H Y 1 N sing Y 2 N sing N 3 N sing Y 4 N doub N 5 N sing Y 6 N sing Y 7 N sing Y 8 N doub N 9 N sing Y 10 N doub N 11 N sing N 12 N sing Y 13 N sing Y 14 N doub N 15 N sing Y 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N doub N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N doub N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N doub N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing Y 156 N sing Y 157 N doub Y 158 N doub N 159 N sing Y 160 N sing N 161 N sing Y 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing Y 294 N doub Y 295 N sing Y 296 N sing N 297 N sing Y 298 N doub N 299 N sing Y 300 N doub N 301 N sing Y 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing Y 363 N doub Y 364 N sing Y 365 N sing N 366 N sing Y 367 N doub Y 368 N sing Y 369 N sing N 370 N sing Y 371 N sing Y 372 N doub N 373 N sing Y 374 N doub N 375 N sing Y 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing Y 391 N doub Y 392 N sing Y 393 N sing N 394 N sing Y 395 N doub N 396 N sing Y 397 N doub N 398 N sing Y 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N doub N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing To be published 0353 Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution 10.2210/pdb1j1r/pdb pdb_00001j1r 278 1 DIFFRACTOMETER WEISSENBERG SINGLE WAVELENGTH M x-ray 1 1.00 1.0 BL-6B Photon Factory 1.00 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6B 29234.373 Antiviral Protein S 3.2.2.22 1 nat polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 135.127 ADENINE 1 syn non-polymer 18.015 water 203 nat water Pokeweed Antiviral Protein, PAP-S1, N-Glycosidase no no INTITFDAGNATINKYATFMESLRNEAKDPSLKCYGIPMLPNTNSTIKYLLVKLQGASLKTITLMLRRNNLYVMGYSDPY DNKCRYHIFNDIKGTEYSDVENTLCPSSNPRVAKPINYNGLYPTLEKKAGVTSRNEVQLGIQILSSDIGKISGQGSFTEK IEAKFLLVAIQMVSEAARFKYIENQVKTNFNRDFSPNDKVLDLEENWGKISTAIHNSKNGALPKPLELKNADGTKWIVLR VDEIKPDVGLLNYVNGTCQAT INTITFDAGNATINKYATFMESLRNEAKDPSLKCYGIPMLPNTNSTIKYLLVKLQGASLKTITLMLRRNNLYVMGYSDPY DNKCRYHIFNDIKGTEYSDVENTLCPSSNPRVAKPINYNGLYPTLEKKAGVTSRNEVQLGIQILSSDIGKISGQGSFTEK IEAKFLLVAIQMVSEAARFKYIENQVKTNFNRDFSPNDKVLDLEENWGKISTAIHNSKNGALPKPLELKNADGTKWIVLR VDEIKPDVGLLNYVNGTCQAT A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n American pokeweed Phytolacca sample 3527 Phytolacca americana seeds 1 2.44 49.28 VAPOR DIFFUSION, HANGING DROP 6.5 66% Saturated Ammomium Sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Data collection Derived calculations Structure summary Data collection Database references Structure summary 1 0 2004-02-03 1 1 2008-04-27 1 2 2011-07-13 1 3 2020-07-29 1 4 2023-12-27 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc 1J1Q complexed with NAG 1J1S complexed with NAG and FMP PDBJ Y PDBJ 2002-12-14 REL REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose ADE ADENINE HOH water NAG 601 2 NAG NAG 601 A ANE 701 3 ADE ADE 701 A HOH 301 4 HOH HOH 301 A HOH 302 4 HOH HOH 302 A HOH 303 4 HOH HOH 303 A HOH 304 4 HOH HOH 304 A HOH 305 4 HOH HOH 305 A HOH 306 4 HOH HOH 306 A HOH 307 4 HOH HOH 307 A HOH 308 4 HOH HOH 308 A HOH 309 4 HOH HOH 309 A HOH 310 4 HOH HOH 310 A HOH 311 4 HOH HOH 311 A HOH 312 4 HOH HOH 312 A HOH 313 4 HOH HOH 313 A HOH 314 4 HOH HOH 314 A HOH 315 4 HOH HOH 315 A HOH 316 4 HOH HOH 316 A HOH 317 4 HOH HOH 317 A HOH 318 4 HOH HOH 318 A HOH 319 4 HOH HOH 319 A HOH 320 4 HOH HOH 320 A HOH 321 4 HOH HOH 321 A HOH 322 4 HOH HOH 322 A HOH 323 4 HOH HOH 323 A HOH 324 4 HOH HOH 324 A HOH 325 4 HOH HOH 325 A HOH 326 4 HOH HOH 326 A HOH 327 4 HOH HOH 327 A HOH 328 4 HOH HOH 328 A HOH 329 4 HOH HOH 329 A HOH 330 4 HOH HOH 330 A HOH 331 4 HOH HOH 331 A HOH 332 4 HOH HOH 332 A HOH 333 4 HOH HOH 333 A HOH 334 4 HOH HOH 334 A HOH 335 4 HOH HOH 335 A HOH 336 4 HOH HOH 336 A HOH 337 4 HOH HOH 337 A HOH 338 4 HOH HOH 338 A HOH 339 4 HOH HOH 339 A HOH 340 4 HOH HOH 340 A HOH 341 4 HOH HOH 341 A HOH 342 4 HOH HOH 342 A HOH 343 4 HOH HOH 343 A HOH 344 4 HOH HOH 344 A HOH 345 4 HOH HOH 345 A HOH 346 4 HOH HOH 346 A HOH 347 4 HOH HOH 347 A HOH 348 4 HOH HOH 348 A HOH 349 4 HOH HOH 349 A HOH 350 4 HOH HOH 350 A HOH 351 4 HOH HOH 351 A HOH 352 4 HOH HOH 352 A HOH 353 4 HOH HOH 353 A HOH 354 4 HOH HOH 354 A HOH 355 4 HOH HOH 355 A HOH 356 4 HOH HOH 356 A HOH 357 4 HOH HOH 357 A HOH 358 4 HOH HOH 358 A HOH 359 4 HOH HOH 359 A HOH 360 4 HOH HOH 360 A HOH 361 4 HOH HOH 361 A HOH 362 4 HOH HOH 362 A HOH 363 4 HOH HOH 363 A HOH 364 4 HOH HOH 364 A HOH 365 4 HOH HOH 365 A HOH 366 4 HOH HOH 366 A HOH 367 4 HOH HOH 367 A HOH 368 4 HOH HOH 368 A HOH 369 4 HOH HOH 369 A HOH 370 4 HOH HOH 370 A HOH 371 4 HOH HOH 371 A HOH 372 4 HOH HOH 372 A HOH 373 4 HOH HOH 373 A HOH 374 4 HOH HOH 374 A HOH 375 4 HOH HOH 375 A HOH 376 4 HOH HOH 376 A HOH 377 4 HOH HOH 377 A HOH 378 4 HOH HOH 378 A HOH 379 4 HOH HOH 379 A HOH 380 4 HOH HOH 380 A HOH 381 4 HOH HOH 381 A HOH 382 4 HOH HOH 382 A HOH 383 4 HOH HOH 383 A HOH 384 4 HOH HOH 384 A HOH 385 4 HOH HOH 385 A HOH 386 4 HOH HOH 386 A HOH 387 4 HOH HOH 387 A HOH 388 4 HOH HOH 388 A HOH 389 4 HOH HOH 389 A HOH 390 4 HOH HOH 390 A HOH 391 4 HOH HOH 391 A HOH 392 4 HOH HOH 392 A HOH 393 4 HOH HOH 393 A HOH 394 4 HOH HOH 394 A HOH 395 4 HOH HOH 395 A HOH 396 4 HOH HOH 396 A HOH 397 4 HOH HOH 397 A HOH 398 4 HOH HOH 398 A HOH 399 4 HOH HOH 399 A HOH 400 4 HOH HOH 400 A HOH 401 4 HOH HOH 401 A HOH 402 4 HOH HOH 402 A HOH 403 4 HOH HOH 403 A HOH 404 4 HOH HOH 404 A HOH 405 4 HOH HOH 405 A HOH 406 4 HOH HOH 406 A HOH 407 4 HOH HOH 407 A HOH 408 4 HOH HOH 408 A HOH 409 4 HOH HOH 409 A HOH 410 4 HOH HOH 410 A HOH 411 4 HOH HOH 411 A HOH 412 4 HOH HOH 412 A HOH 413 4 HOH HOH 413 A HOH 414 4 HOH HOH 414 A HOH 415 4 HOH HOH 415 A HOH 416 4 HOH HOH 416 A HOH 417 4 HOH HOH 417 A HOH 418 4 HOH HOH 418 A HOH 419 4 HOH HOH 419 A HOH 420 4 HOH HOH 420 A HOH 421 4 HOH HOH 421 A HOH 422 4 HOH HOH 422 A HOH 423 4 HOH HOH 423 A HOH 424 4 HOH HOH 424 A HOH 425 4 HOH HOH 425 A HOH 426 4 HOH HOH 426 A HOH 427 4 HOH HOH 427 A HOH 428 4 HOH HOH 428 A HOH 429 4 HOH HOH 429 A HOH 430 4 HOH HOH 430 A HOH 431 4 HOH HOH 431 A HOH 432 4 HOH HOH 432 A HOH 433 4 HOH HOH 433 A HOH 434 4 HOH HOH 434 A HOH 435 4 HOH HOH 435 A HOH 436 4 HOH HOH 436 A HOH 437 4 HOH HOH 437 A HOH 438 4 HOH HOH 438 A HOH 439 4 HOH HOH 439 A HOH 440 4 HOH HOH 440 A HOH 441 4 HOH HOH 441 A HOH 442 4 HOH HOH 442 A HOH 443 4 HOH HOH 443 A HOH 444 4 HOH HOH 444 A HOH 445 4 HOH HOH 445 A HOH 446 4 HOH HOH 446 A HOH 447 4 HOH HOH 447 A HOH 448 4 HOH HOH 448 A HOH 449 4 HOH HOH 449 A HOH 450 4 HOH HOH 450 A HOH 451 4 HOH HOH 451 A HOH 452 4 HOH HOH 452 A HOH 453 4 HOH HOH 453 A HOH 454 4 HOH HOH 454 A HOH 455 4 HOH HOH 455 A HOH 456 4 HOH HOH 456 A HOH 457 4 HOH HOH 457 A HOH 458 4 HOH HOH 458 A HOH 459 4 HOH HOH 459 A HOH 460 4 HOH HOH 460 A HOH 461 4 HOH HOH 461 A HOH 462 4 HOH HOH 462 A HOH 463 4 HOH HOH 463 A HOH 464 4 HOH HOH 464 A HOH 465 4 HOH HOH 465 A HOH 466 4 HOH HOH 466 A HOH 467 4 HOH HOH 467 A HOH 468 4 HOH HOH 468 A HOH 469 4 HOH HOH 469 A HOH 470 4 HOH HOH 470 A HOH 471 4 HOH HOH 471 A HOH 472 4 HOH HOH 472 A HOH 473 4 HOH HOH 473 A HOH 474 4 HOH HOH 474 A HOH 475 4 HOH HOH 475 A HOH 476 4 HOH HOH 476 A HOH 477 4 HOH HOH 477 A HOH 478 4 HOH HOH 478 A HOH 479 4 HOH HOH 479 A HOH 480 4 HOH HOH 480 A HOH 481 4 HOH HOH 481 A HOH 482 4 HOH HOH 482 A HOH 483 4 HOH HOH 483 A HOH 484 4 HOH HOH 484 A HOH 485 4 HOH HOH 485 A HOH 486 4 HOH HOH 486 A HOH 487 4 HOH HOH 487 A HOH 488 4 HOH HOH 488 A HOH 489 4 HOH HOH 489 A HOH 490 4 HOH HOH 490 A HOH 491 4 HOH HOH 491 A HOH 492 4 HOH HOH 492 A HOH 493 4 HOH HOH 493 A HOH 494 4 HOH HOH 494 A HOH 495 4 HOH HOH 495 A HOH 496 4 HOH HOH 496 A HOH 497 4 HOH HOH 497 A HOH 498 4 HOH HOH 498 A HOH 499 4 HOH HOH 499 A HOH 500 4 HOH HOH 500 A HOH 501 4 HOH HOH 501 A HOH 502 4 HOH HOH 502 A HOH 503 4 HOH HOH 503 A ILE 1 n 1 ILE 1 A ASN 2 n 2 ASN 2 A THR 3 n 3 THR 3 A ILE 4 n 4 ILE 4 A THR 5 n 5 THR 5 A PHE 6 n 6 PHE 6 A ASP 7 n 7 ASP 7 A ALA 8 n 8 ALA 8 A GLY 9 n 9 GLY 9 A ASN 10 n 10 ASN 10 A ALA 11 n 11 ALA 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A ASN 14 n 14 ASN 14 A LYS 15 n 15 LYS 15 A TYR 16 n 16 TYR 16 A ALA 17 n 17 ALA 17 A THR 18 n 18 THR 18 A PHE 19 n 19 PHE 19 A MET 20 n 20 MET 20 A GLU 21 n 21 GLU 21 A SER 22 n 22 SER 22 A LEU 23 n 23 LEU 23 A ARG 24 n 24 ARG 24 A ASN 25 n 25 ASN 25 A GLU 26 n 26 GLU 26 A ALA 27 n 27 ALA 27 A LYS 28 n 28 LYS 28 A ASP 29 n 29 ASP 29 A PRO 30 n 30 PRO 30 A SER 31 n 31 SER 31 A LEU 32 n 32 LEU 32 A LYS 33 n 33 LYS 33 A CYS 34 n 34 CYS 34 A TYR 35 n 35 TYR 35 A GLY 36 n 36 GLY 36 A ILE 37 n 37 ILE 37 A PRO 38 n 38 PRO 38 A MET 39 n 39 MET 39 A LEU 40 n 40 LEU 40 A PRO 41 n 41 PRO 41 A ASN 42 n 42 ASN 42 A THR 43 n 43 THR 43 A ASN 44 n 44 ASN 44 A SER 45 n 45 SER 45 A THR 46 n 46 THR 46 A ILE 47 n 47 ILE 47 A LYS 48 n 48 LYS 48 A TYR 49 n 49 TYR 49 A LEU 50 n 50 LEU 50 A LEU 51 n 51 LEU 51 A VAL 52 n 52 VAL 52 A LYS 53 n 53 LYS 53 A LEU 54 n 54 LEU 54 A GLN 55 n 55 GLN 55 A GLY 56 n 56 GLY 56 A ALA 57 n 57 ALA 57 A SER 58 n 58 SER 58 A LEU 59 n 59 LEU 59 A LYS 60 n 60 LYS 60 A THR 61 n 61 THR 61 A ILE 62 n 62 ILE 62 A THR 63 n 63 THR 63 A LEU 64 n 64 LEU 64 A MET 65 n 65 MET 65 A LEU 66 n 66 LEU 66 A ARG 67 n 67 ARG 67 A ARG 68 n 68 ARG 68 A ASN 69 n 69 ASN 69 A ASN 70 n 70 ASN 70 A LEU 71 n 71 LEU 71 A TYR 72 n 72 TYR 72 A VAL 73 n 73 VAL 73 A MET 74 n 74 MET 74 A GLY 75 n 75 GLY 75 A TYR 76 n 76 TYR 76 A SER 77 n 77 SER 77 A ASP 78 n 78 ASP 78 A PRO 79 n 79 PRO 79 A TYR 80 n 80 TYR 80 A ASP 81 n 81 ASP 81 A ASN 82 n 82 ASN 82 A LYS 83 n 83 LYS 83 A CYS 84 n 84 CYS 84 A ARG 85 n 85 ARG 85 A TYR 86 n 86 TYR 86 A HIS 87 n 87 HIS 87 A ILE 88 n 88 ILE 88 A PHE 89 n 89 PHE 89 A ASN 90 n 90 ASN 90 A ASP 91 n 91 ASP 91 A ILE 92 n 92 ILE 92 A LYS 93 n 93 LYS 93 A GLY 94 n 94 GLY 94 A THR 95 n 95 THR 95 A GLU 96 n 96 GLU 96 A TYR 97 n 97 TYR 97 A SER 98 n 98 SER 98 A ASP 99 n 99 ASP 99 A VAL 100 n 100 VAL 100 A GLU 101 n 101 GLU 101 A ASN 102 n 102 ASN 102 A THR 103 n 103 THR 103 A LEU 104 n 104 LEU 104 A CYS 105 n 105 CYS 105 A PRO 106 n 106 PRO 106 A SER 107 n 107 SER 107 A SER 108 n 108 SER 108 A ASN 109 n 109 ASN 109 A PRO 110 n 110 PRO 110 A ARG 111 n 111 ARG 111 A VAL 112 n 112 VAL 112 A ALA 113 n 113 ALA 113 A LYS 114 n 114 LYS 114 A PRO 115 n 115 PRO 115 A ILE 116 n 116 ILE 116 A ASN 117 n 117 ASN 117 A TYR 118 n 118 TYR 118 A ASN 119 n 119 ASN 119 A GLY 120 n 120 GLY 120 A LEU 121 n 121 LEU 121 A TYR 122 n 122 TYR 122 A PRO 123 n 123 PRO 123 A THR 124 n 124 THR 124 A LEU 125 n 125 LEU 125 A GLU 126 n 126 GLU 126 A LYS 127 n 127 LYS 127 A LYS 128 n 128 LYS 128 A ALA 129 n 129 ALA 129 A GLY 130 n 130 GLY 130 A VAL 131 n 131 VAL 131 A THR 132 n 132 THR 132 A SER 133 n 133 SER 133 A ARG 134 n 134 ARG 134 A ASN 135 n 135 ASN 135 A GLU 136 n 136 GLU 136 A VAL 137 n 137 VAL 137 A GLN 138 n 138 GLN 138 A LEU 139 n 139 LEU 139 A GLY 140 n 140 GLY 140 A ILE 141 n 141 ILE 141 A GLN 142 n 142 GLN 142 A ILE 143 n 143 ILE 143 A LEU 144 n 144 LEU 144 A SER 145 n 145 SER 145 A SER 146 n 146 SER 146 A ASP 147 n 147 ASP 147 A ILE 148 n 148 ILE 148 A GLY 149 n 149 GLY 149 A LYS 150 n 150 LYS 150 A ILE 151 n 151 ILE 151 A SER 152 n 152 SER 152 A GLY 153 n 153 GLY 153 A GLN 154 n 154 GLN 154 A GLY 155 n 155 GLY 155 A SER 156 n 156 SER 156 A PHE 157 n 157 PHE 157 A THR 158 n 158 THR 158 A GLU 159 n 159 GLU 159 A LYS 160 n 160 LYS 160 A ILE 161 n 161 ILE 161 A GLU 162 n 162 GLU 162 A ALA 163 n 163 ALA 163 A LYS 164 n 164 LYS 164 A PHE 165 n 165 PHE 165 A LEU 166 n 166 LEU 166 A LEU 167 n 167 LEU 167 A VAL 168 n 168 VAL 168 A ALA 169 n 169 ALA 169 A ILE 170 n 170 ILE 170 A GLN 171 n 171 GLN 171 A MET 172 n 172 MET 172 A VAL 173 n 173 VAL 173 A SER 174 n 174 SER 174 A GLU 175 n 175 GLU 175 A ALA 176 n 176 ALA 176 A ALA 177 n 177 ALA 177 A ARG 178 n 178 ARG 178 A PHE 179 n 179 PHE 179 A LYS 180 n 180 LYS 180 A TYR 181 n 181 TYR 181 A ILE 182 n 182 ILE 182 A GLU 183 n 183 GLU 183 A ASN 184 n 184 ASN 184 A GLN 185 n 185 GLN 185 A VAL 186 n 186 VAL 186 A LYS 187 n 187 LYS 187 A THR 188 n 188 THR 188 A ASN 189 n 189 ASN 189 A PHE 190 n 190 PHE 190 A ASN 191 n 191 ASN 191 A ARG 192 n 192 ARG 192 A ASP 193 n 193 ASP 193 A PHE 194 n 194 PHE 194 A SER 195 n 195 SER 195 A PRO 196 n 196 PRO 196 A ASN 197 n 197 ASN 197 A ASP 198 n 198 ASP 198 A LYS 199 n 199 LYS 199 A VAL 200 n 200 VAL 200 A LEU 201 n 201 LEU 201 A ASP 202 n 202 ASP 202 A LEU 203 n 203 LEU 203 A GLU 204 n 204 GLU 204 A GLU 205 n 205 GLU 205 A ASN 206 n 206 ASN 206 A TRP 207 n 207 TRP 207 A GLY 208 n 208 GLY 208 A LYS 209 n 209 LYS 209 A ILE 210 n 210 ILE 210 A SER 211 n 211 SER 211 A THR 212 n 212 THR 212 A ALA 213 n 213 ALA 213 A ILE 214 n 214 ILE 214 A HIS 215 n 215 HIS 215 A ASN 216 n 216 ASN 216 A SER 217 n 217 SER 217 A LYS 218 n 218 LYS 218 A ASN 219 n 219 ASN 219 A GLY 220 n 220 GLY 220 A ALA 221 n 221 ALA 221 A LEU 222 n 222 LEU 222 A PRO 223 n 223 PRO 223 A LYS 224 n 224 LYS 224 A PRO 225 n 225 PRO 225 A LEU 226 n 226 LEU 226 A GLU 227 n 227 GLU 227 A LEU 228 n 228 LEU 228 A LYS 229 n 229 LYS 229 A ASN 230 n 230 ASN 230 A ALA 231 n 231 ALA 231 A ASP 232 n 232 ASP 232 A GLY 233 n 233 GLY 233 A THR 234 n 234 THR 234 A LYS 235 n 235 LYS 235 A TRP 236 n 236 TRP 236 A ILE 237 n 237 ILE 237 A VAL 238 n 238 VAL 238 A LEU 239 n 239 LEU 239 A ARG 240 n 240 ARG 240 A VAL 241 n 241 VAL 241 A ASP 242 n 242 ASP 242 A GLU 243 n 243 GLU 243 A ILE 244 n 244 ILE 244 A LYS 245 n 245 LYS 245 A PRO 246 n 246 PRO 246 A ASP 247 n 247 ASP 247 A VAL 248 n 248 VAL 248 A GLY 249 n 249 GLY 249 A LEU 250 n 250 LEU 250 A LEU 251 n 251 LEU 251 A ASN 252 n 252 ASN 252 A TYR 253 n 253 TYR 253 A VAL 254 n 254 VAL 254 A ASN 255 n 255 ASN 255 A GLY 256 n 256 GLY 256 A THR 257 n 257 THR 257 A CYS 258 n 258 CYS 258 A GLN 259 n 259 GLN 259 A ALA 260 n 260 ALA 260 A THR 261 n 261 THR 261 A author_defined_assembly 1 monomeric A ASN 255 GLYCOSYLATION SITE A ASN 255 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 4 A N ILE 4 A O LEU 51 A O LEU 51 A N VAL 52 A N VAL 52 A O LEU 64 A O LEU 64 A N MET 65 A N MET 65 A O MET 74 A O MET 74 A N TYR 76 A N TYR 76 A O HIS 87 A O HIS 87 A N TYR 86 A N TYR 86 A O VAL 112 A O VAL 112 A N CYS 34 A N CYS 34 A O ILE 37 A O ILE 37 A N LEU 228 A N LEU 228 A O TRP 236 A O TRP 236 1 A HOH 428 D HOH 1 A HOH 429 D HOH 1 A HOH 430 D HOH 1 3.60 0.50 120.30 123.90 A A A NE CZ NH1 ARG ARG ARG 67 67 67 N 1 -6.79 0.50 120.30 113.51 A A A NE CZ NH2 ARG ARG ARG 67 67 67 N 1 -11.49 1.60 100.20 88.71 A A A CG SD CE MET MET MET 74 74 74 N 1 3.60 0.50 120.30 123.90 A A A NE CZ NH1 ARG ARG ARG 85 85 85 N 1 4.28 0.50 120.30 124.58 A A A NE CZ NH1 ARG ARG ARG 111 111 111 N 1 -3.20 0.50 120.30 117.10 A A A NE CZ NH2 ARG ARG ARG 111 111 111 N 1 5.68 0.80 106.30 111.98 A A A CD1 CG CD2 TRP TRP TRP 207 207 207 N 1 -4.85 0.80 107.30 102.45 A A A CE2 CD2 CG TRP TRP TRP 207 207 207 N 1 5.77 0.80 106.30 112.07 A A A CD1 CG CD2 TRP TRP TRP 236 236 236 N 1 -5.34 0.80 107.30 101.96 A A A CE2 CD2 CG TRP TRP TRP 236 236 236 N 1 A A NE2 CD2 HIS HIS 87 87 -0.073 0.011 1.373 1.300 N 1 A LYS 33 -170.64 144.28 1 A ASN 70 -141.07 11.34 1 A ASN 90 -67.43 2.89 1 A ASN 117 -88.28 48.60 1 A VAL 173 -115.83 -72.19 1 A ASN 189 -94.66 34.73 1 A LEU 228 -117.01 -163.68 protein_rep.param protein.top water_rep.param water.top carbohydrate.param carbohydrate.top ane.param ane.top 69.45 19.88 6.26 0.39 0.00 0.00 -.96 0.00 0.56 0.228 0.005 0.168 1.90 10.00 2262 24818 22896 9.9 92.3 1.00 0.50 random 1 THROUGHOUT MOLECULAR REPLACEMENT CNS bulk solvent model used 67.3406 0.303524 0.24 0.18 5.00 0.15 0.19 1.90 1.90 10.00 203 2280 24 0 2053 0.017 2.7 23.9 1.14 0.238 0.016 0.223 1.99 232 2058 3053 2290 8 10.1 75.0 0.233 0.014 0.205 2.09 267 2307 3080 2574 8 10.4 83.5 0.248 0.016 0.204 2.22 246 2539 3058 2785 8 8.8 91.0 0.239 0.015 0.19 2.39 270 2682 3104 2952 8 9.1 95.1 0.241 0.014 0.183 2.62 307 2669 3082 2976 8 10.3 96.6 0.264 0.015 0.181 3.00 327 2711 3113 3038 8 10.8 97.6 0.215 0.012 0.144 3.74 302 2804 3137 3106 8 9.7 99.0 0.199 0.011 0.133 10.00 311 2864 3221 3175 8 9.8 98.5 10.8 1.80 10.00 1J1R 43 0 47 0 51 0 25611 22896 1874625.79 30.261000 0.0 1 refinement Axel T. Brunger axel.brunger@@yale.edu 1998 Fortran CNS package 1.1 phasing X-PLOR refinement X-PLOR 3.1 Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Adenine 1 N N 2 N N 3 N N 4 N N A THR 12 A THR 12 HELX_P A LYS 28 A LYS 28 1 1 17 A LYS 93 A LYS 93 HELX_P A CYS 105 A CYS 105 1 2 13 A LEU 121 A LEU 121 HELX_P A GLY 130 A GLY 130 1 3 10 A SER 133 A SER 133 HELX_P A VAL 137 A VAL 137 5 4 5 A GLY 140 A GLY 140 HELX_P A SER 152 A SER 152 1 5 13 A THR 158 A THR 158 HELX_P A VAL 173 A VAL 173 1 6 16 A VAL 173 A VAL 173 HELX_P A PHE 179 A PHE 179 1 7 7 A PHE 179 A PHE 179 HELX_P A ASN 189 A ASN 189 1 8 11 A ASN 197 A ASN 197 HELX_P A ASN 206 A ASN 206 1 9 10 A ASN 206 A ASN 206 HELX_P A SER 217 A SER 217 1 10 12 A VAL 241 A VAL 241 HELX_P A LYS 245 A LYS 245 1 11 5 A PRO 246 A PRO 246 HELX_P A VAL 248 A VAL 248 5 12 3 disulf 2.009 A CYS 34 A SG CYS 34 1_555 A CYS 258 A SG CYS 258 1_555 disulf 1.967 A CYS 84 A SG CYS 84 1_555 A CYS 105 A SG CYS 105 1_555 covale 1.443 one N-Glycosylation A ASN 255 A ND2 ASN 255 1_555 A NAG 601 B C1 NAG 1_555 HYDROLASE POKEWEED ANTIVIRAL PROTEIN, N-GLYCOSIDASE, RIBOSOME-INACTIVATING PROTEIN, HYDROLASE RIPS_PHYAM UNP 1 1 P23339 INTITFDAGNATINKYATFMESLRNEAKDPSLKCYGIPMLPNTNSTIKYLLVKLQGASLKTITLMLRRNNLYVMGYSDPY DNKCRYHIFNDIKGTEYSDVENTLCPSSNPRVAKPINYNGLYPTLEKKAGVTSRNEVQLGIQILSSDIGKISGQGSFTEK IEAKFLLVAIQMVSEAARFKYIENQVKTNFNRDFSPNDKVLDLEENWGKISTAIHNSKNGALPKPLELKNADGTKWIVLR VDEIKPDVGLLNYVNGTCQAT 1 261 1J1R 1 261 P23339 A 1 1 261 6 2 2 parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A ILE 4 A ILE 4 A ASP 7 A ASP 7 A TYR 49 A TYR 49 A GLN 55 A GLN 55 A THR 61 A THR 61 A ARG 67 A ARG 67 A TYR 72 A TYR 72 A TYR 80 A TYR 80 A LYS 83 A LYS 83 A ILE 88 A ILE 88 A ARG 111 A ARG 111 A ALA 113 A ALA 113 A LYS 33 A LYS 33 A CYS 34 A CYS 34 A ILE 37 A ILE 37 A PRO 38 A PRO 38 A ALA 221 A ALA 221 A LYS 229 A LYS 229 A LYS 235 A LYS 235 A ARG 240 A ARG 240 23 I 2 2 2