0.011520 0.006651 0.000000 0.000000 0.013302 0.000000 0.000000 0.000000 0.006407 0.00000 0.00000 0.00000 Kobayashi, T. Nureki, O. Ishitani, R. Tukalo, M. Cusack, S. Sakamoto, K. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 86.805 86.805 156.075 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 R C N 148 N C N 149 N O N 150 N C N 151 N S N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N O N 161 N P N 162 N O N 163 N O N 164 N O N 165 N C N 166 R C N 167 N O N 168 S C N 169 N O N 170 R C N 171 N O N 172 R C Y 173 N N Y 174 N C Y 175 N N Y 176 N C N 177 N C N 178 N O N 179 N N N 180 N C N 181 N N N 182 N N Y 183 N C N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C N 203 N C N 204 N C N 205 N O N 206 N N N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 N C N 223 N C N 224 N C N 225 N O N 226 N O N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 N C N 239 N C N 240 N O N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N N Y 254 N C Y 255 N C Y 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N O N 269 N H N 270 N H N 271 N N N 272 S C N 273 N C N 274 N O N 275 S C N 276 N C N 277 N C N 278 N C N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C N 298 N C N 299 N C N 300 N C N 301 N O N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C N 320 N C N 321 N C N 322 N C N 323 N N N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C N 345 N C N 346 N S N 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N MG N 361 N N N 362 S C N 363 N C N 364 N O N 365 N C Y 366 N C Y 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N N N 385 S C N 386 N C N 387 N O N 388 N C N 389 N C N 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C N 406 N O N 407 N O N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N N N 416 S C N 417 N C N 418 N O N 419 R C N 420 N O N 421 N C N 422 N O N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N N N 433 S C N 434 N C N 435 N O N 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C N 443 N O N 444 N O N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N O N 457 N P N 458 N O N 459 N O N 460 N O N 461 N C N 462 R C N 463 N O N 464 S C N 465 N O N 466 R C N 467 N O N 468 R C N 469 N N N 470 N C N 471 N O N 472 N N N 473 N C N 474 N O N 475 N C N 476 N C N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N N N 491 S C N 492 N C N 493 N O N 494 N C N 495 N C N 496 N C N 497 N O N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing Y 182 N sing Y 183 N sing Y 184 N doub N 185 N sing Y 186 N sing N 187 N sing Y 188 N doub N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing Y 255 N sing Y 256 N doub Y 257 N doub N 258 N sing Y 259 N sing N 260 N sing Y 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing Y 363 N doub Y 364 N sing Y 365 N sing N 366 N sing Y 367 N doub N 368 N sing Y 369 N doub N 370 N sing Y 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N doub N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N doub N 428 N sing N 429 N sing N 430 N sing N 431 N sing Y 432 N doub Y 433 N sing Y 434 N sing N 435 N sing Y 436 N doub N 437 N sing Y 438 N doub N 439 N sing Y 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N doub N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N doub N 472 N sing N 473 N sing N 474 N sing N 475 N doub N 476 N sing N 477 N doub N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N doub N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing US NAT.STRUCT.BIOL. NSBIEW 2024 1072-8368 10 425 432 10.1038/nsb934 12754495 Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion 2003 10.2210/pdb1j1u/pdb pdb_00001j1u 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 100 1 mirrors CCD 2002-05-23 MARRESEARCH mirrors CCD 2002-06-13 MARRESEARCH Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 0.9132 1.0 0.9793 1.0 BL41XU SPring-8 0.9132 SYNCHROTRON SPRING-8 BEAMLINE BL41XU BL41XU SPring-8 0.9793 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 24804.752 tRNA(Tyr) 1 syn polymer 35102.816 Tyrosyl-tRNA synthetase 6.1.1.1 1 man polymer 24.305 MAGNESIUM ION 4 syn non-polymer 181.189 TYROSINE 1 syn non-polymer 18.015 water 364 nat water E.C.6.1.1.1 no no CCGGCGGUAGUUCAGCCUGGUAGAACGGCGGACUGUAGAUCCGCAUGUCGCUGGUUCAAAUCCGGCCCGCCGGACCA CCGGCGGUAGUUCAGCCUGGUAGAACGGCGGACUGUAGAUCCGCAUGUCGCUGGUUCAAAUCCGGCCCGCCGGACCA B polyribonucleotide no no MDEFEMIKRNTSEIISEEELREVLKKDEKSAYIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIIILLADLHAYLNQKGELD EIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNDIH YLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNP IMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIRKRL MDEFEMIKRNTSEIISEEELREVLKKDEKSAYIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIIILLADLHAYLNQKGELD EIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNDIH YLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNP IMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIRKRL A my_001000009.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Methanocaldococcus Escherichia Escherichia coli sample TYRS 2190 Methanocaldococcus jannaschii 469008 Escherichia coli BL21(DE3) BL21(DE3) PLASMID pET3A 2 2.76 55.11 VAPOR DIFFUSION, HANGING DROP 4.6 1,6-hexanediol, ammonium chloride, magnesium chloride, zinc acetate, sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 303K 303 1,6-hexanediol 1 ammonium chloride 1 magnesium chloride 1 zinc acetate 1 sodium acetate 1 ammonium chloride 2 magnesium chloride 2 zinc acetate 2 sodium acetate 2 12.958 1 19 B 501 B 573 3.641 B_C501:G573_B 1 -23.526 0.452 0.155 -0.189 2.909 1 19 B 502 B 572 1.183 B_C502:G572_B 2 -15.826 0.264 0.282 -0.222 0.879 1 19 B 503 B 571 0.059 B_G503:C571_B 3 -13.490 -0.009 0.295 -0.151 2.241 1 19 B 504 B 570 -0.333 B_G504:C570_B 4 -13.896 -0.202 0.169 -0.185 2.815 1 19 B 505 B 569 3.421 B_C505:G569_B 5 -13.222 0.204 0.118 -0.135 -6.577 1 19 B 506 B 568 1.838 B_G506:C568_B 6 -16.980 -0.262 0.100 -0.117 -9.284 1 19 B 507 B 567 -2.148 B_G507:C567_B 7 -7.111 -0.135 -0.244 -0.189 -4.634 1 19 B 550 B 566 -0.379 B_G550:C566_B 8 -11.343 -0.166 -0.011 -0.082 0.546 1 19 B 551 B 565 0.734 B_C551:G565_B 9 -15.416 0.243 -0.046 -0.246 -4.836 1 28 B 552 B 564 0.846 B_U552:G564_B 10 -9.719 2.333 0.126 -0.602 -6.233 1 19 B 553 B 563 1.904 B_G553:C563_B 11 -11.750 -0.343 -0.345 -0.207 -8.651 1 19 B 554 B 562 -1.981 B_G554:C562_B 12 -12.311 -0.363 -0.117 -0.100 -4.743 4 24 B 555 B 559 -100.925 B_U555:A559_B 13 8.563 4.035 0.264 -1.931 17.344 2 B 556 B 519 -94.099 B_U556:G519_B 14 17.140 0.666 0.320 -5.462 -24.416 B 537 B 534 -136.594 B_A537:U534_B 15 12.718 -4.136 -0.811 0.500 16.503 1 B 539 B 533 -12.739 B_A539:C533_B 16 -8.783 -4.090 0.904 -0.722 13.447 1 20 B 540 B 532 9.538 B_U540:A532_B 17 -22.170 -0.692 0.013 -0.205 5.504 1 B 541 B 531 -19.276 B_C541:G531_B 18 -16.020 -0.794 0.082 -0.145 -0.324 1 19 B 542 B 530 -1.406 B_C542:G530_B 19 -15.449 1.149 0.215 -0.666 -5.499 1 19 B 543 B 529 3.231 B_G543:C529_B 20 -16.876 0.472 0.397 0.012 -8.755 1 19 B 544 B 528 -5.683 B_C544:G528_B 21 -10.969 0.058 0.460 -0.341 -13.488 8 B 545 B 527 -26.335 B_A545:G527_B 22 -16.601 0.211 0.254 1.230 -5.174 1 19 B 510 B 526 0.346 B_G510:C526_B 23 -8.825 -0.527 0.020 -0.159 -12.144 1 20 B 511 B 525 1.698 B_U511:A525_B 24 -19.119 -0.024 0.338 -0.342 -5.008 1 20 B 512 B 524 -5.615 B_U512:A524_B 25 -8.303 -0.161 -0.327 -0.303 -1.510 1 19 B 513 B 523 5.450 B_C513:G523_B 26 -1.793 0.273 0.065 -0.214 5.256 4 24 B 514 B 508 -97.354 B_A514:U508_B 27 8.197 -3.854 0.619 -2.163 6.985 2 22 B 515 B 549 152.775 B_G515:C549_B 28 5.350 0.136 0.118 3.894 -22.334 1 19 B 520 B 557 2.623 B_G520:C557_B 29 -24.117 -0.329 -0.221 0.279 2.902 35.242 B B 501 502 15.607 B B 573 572 3.420 9.317 -0.485 -1.698 BB_C501C502:G572G573_BB 1 -4.584 7.679 33.724 -4.174 0.128 2.036 31.548 B B 502 503 24.705 B B 572 571 3.055 13.043 -0.232 -1.889 BB_C502G503:C571G572_BB 2 -1.480 2.803 28.751 -5.455 0.203 2.989 34.828 B B 503 504 8.292 B B 571 570 3.178 4.947 -0.562 -1.230 BB_G503G504:C570C571_BB 3 -0.719 1.205 34.479 -2.767 0.836 2.918 32.119 B B 504 505 11.465 B B 570 569 3.202 6.303 0.779 -1.280 BB_G504C505:G569C570_BB 4 0.920 -1.673 31.497 -3.382 -1.251 2.066 31.071 B B 505 506 26.377 B B 569 568 3.282 13.668 0.303 -2.076 BB_C505G506:C568G569_BB 5 0.002 -0.004 27.970 -6.138 -0.566 2.691 35.274 B B 506 507 16.254 B B 568 567 3.233 9.728 -0.754 -1.480 BB_G506G507:C567C568_BB 6 1.264 -2.113 33.925 -3.775 1.417 2.585 33.423 B B 507 550 13.631 B B 567 566 3.138 7.771 0.116 -2.071 BB_G507G550:C566C567_BB 7 -0.757 1.328 32.523 -4.742 -0.312 3.023 34.696 B B 550 551 2.364 B B 566 565 3.092 1.409 -0.633 -1.530 BB_G550C551:G565C566_BB 8 0.328 -0.551 34.667 -2.767 1.108 3.296 41.447 B B 551 552 4.035 B B 565 564 3.393 2.854 0.291 -1.383 BB_C551U552:G564G565_BB 9 0.124 -0.175 41.353 -2.265 -0.397 2.195 23.353 B B 552 553 21.787 B B 564 563 3.260 8.489 -0.026 -1.929 BB_U552G553:C563G564_BB 10 6.749 -17.322 20.714 -7.332 2.105 2.932 29.840 B B 553 554 11.086 B B 563 562 3.329 5.672 0.941 -2.082 BB_G553G554:C562C563_BB 11 1.723 -3.367 29.258 -5.184 -1.481 3.115 91.163 B B 554 555 0.833 B B 562 559 3.185 1.189 -2.000 -2.172 BB_G554U555:A559C562_BB 12 2.731 -1.912 91.125 -1.543 1.451 3.794 43.110 B B 555 556 5.101 B B 559 519 3.498 3.699 2.182 -1.783 BB_U555U556:G519A559_BB 13 11.999 -16.548 41.325 -2.841 -1.622 2.797 51.353 B B 537 539 23.110 B B 534 533 4.865 19.490 2.663 -3.465 BB_A537A539:C533U534_BB 14 -8.894 10.545 46.949 -5.648 -3.825 3.088 45.597 B B 539 540 17.945 B B 533 532 3.493 13.713 0.575 -0.902 BB_A539U540:A532C533_BB 15 -0.009 0.012 43.591 -2.405 -0.742 3.099 36.382 B B 540 541 14.394 B B 532 531 3.486 8.827 -0.708 -1.516 BB_U540C541:G531A532_BB 16 -8.276 13.495 34.376 -3.704 -0.061 3.271 43.538 B B 541 542 7.757 B B 531 530 3.433 5.737 0.588 -1.231 BB_C541C542:G530G531_BB 17 1.731 -2.341 43.143 -2.229 -0.621 2.278 28.096 B B 542 543 20.903 B B 530 529 3.159 9.936 0.351 -1.993 BB_C542G543:C529G530_BB 18 0.714 -1.501 26.304 -6.115 -0.578 3.035 33.137 B B 543 544 4.496 B B 529 528 3.187 2.561 -0.258 -1.785 BB_G543C544:G528C529_BB 19 0.982 -1.724 33.026 -3.541 0.610 2.798 33.910 B B 544 545 8.392 B B 528 527 3.222 4.866 -0.946 -1.811 BB_C544A545:G527G528_BB 20 4.260 -7.347 33.306 -3.831 2.257 2.346 64.518 B B 545 510 4.572 B B 527 526 2.894 4.867 -3.036 -2.761 BB_A545G510:C526G527_BB 21 8.016 -7.530 63.906 -2.753 3.118 3.011 37.883 B B 510 511 11.614 B B 526 525 3.303 7.490 -0.499 -1.335 BB_G510U511:A525C526_BB 22 -2.296 3.560 37.093 -2.993 0.481 2.557 33.325 B B 511 512 11.893 B B 525 524 2.944 6.756 -0.895 -0.942 BB_U511U512:A524A525_BB 23 4.504 -7.929 32.348 -2.602 2.200 2.907 28.678 B B 512 513 11.113 B B 524 523 3.300 5.471 1.822 -1.469 BB_U512C513:G523A524_BB 24 -0.939 1.906 28.147 -4.148 -3.881 3.129 65.043 B B 513 514 -4.340 B B 523 508 3.126 -4.663 -1.339 -0.556 BB_C513A514:U508G523_BB 25 1.351 -1.257 64.881 -0.331 1.299 3.582 -70.087 B B 514 515 -6.553 B B 508 549 3.355 7.514 1.824 -3.214 BB_A514G515:C549U508_BB 26 2.521 2.199 -69.694 2.515 1.684 RIKEN Structural Genomics/Proteomics Initiative RSGI chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-06-03 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y PDBJ Y PDBJ 2002-12-17 REL REL MG MAGNESIUM ION TYR TYROSINE HOH water This sequence occurs in Methanococcus jannaschii. sample MG 1501 3 MG MG 1501 B MG 502 3 MG MG 1502 B MG 504 3 MG MG 1503 B MG 503 3 MG MG 503 A TYR 401 4 TYR TYR 401 A HOH 5 5 HOH HOH 5 B HOH 18 5 HOH HOH 18 B HOH 23 5 HOH HOH 23 B HOH 24 5 HOH HOH 24 B HOH 25 5 HOH HOH 25 B HOH 28 5 HOH HOH 28 B HOH 38 5 HOH HOH 38 B HOH 41 5 HOH HOH 41 B HOH 43 5 HOH HOH 43 B HOH 46 5 HOH HOH 46 B HOH 56 5 HOH HOH 56 B HOH 58 5 HOH HOH 58 B HOH 59 5 HOH HOH 59 B HOH 60 5 HOH HOH 60 B HOH 61 5 HOH HOH 61 B HOH 66 5 HOH HOH 66 B HOH 71 5 HOH HOH 71 B HOH 77 5 HOH HOH 77 B HOH 88 5 HOH HOH 88 B HOH 92 5 HOH HOH 92 B HOH 98 5 HOH HOH 98 B HOH 107 5 HOH HOH 107 B HOH 112 5 HOH HOH 112 B HOH 116 5 HOH HOH 116 B HOH 118 5 HOH HOH 118 B HOH 120 5 HOH HOH 120 B HOH 126 5 HOH HOH 126 B HOH 131 5 HOH HOH 131 B HOH 132 5 HOH HOH 132 B HOH 133 5 HOH HOH 133 B HOH 138 5 HOH HOH 138 B HOH 141 5 HOH HOH 141 B HOH 142 5 HOH HOH 142 B HOH 145 5 HOH HOH 145 B HOH 148 5 HOH HOH 148 B HOH 149 5 HOH HOH 149 B HOH 152 5 HOH HOH 152 B HOH 155 5 HOH HOH 155 B HOH 157 5 HOH HOH 157 B HOH 160 5 HOH HOH 160 B HOH 162 5 HOH HOH 162 B HOH 163 5 HOH HOH 163 B HOH 165 5 HOH HOH 165 B HOH 168 5 HOH HOH 168 B HOH 169 5 HOH HOH 169 B HOH 171 5 HOH HOH 171 B HOH 173 5 HOH HOH 173 B HOH 175 5 HOH HOH 175 B HOH 181 5 HOH HOH 181 B HOH 182 5 HOH HOH 182 B HOH 185 5 HOH HOH 185 B HOH 192 5 HOH HOH 192 B HOH 195 5 HOH HOH 195 B HOH 196 5 HOH HOH 196 B HOH 197 5 HOH HOH 197 B HOH 198 5 HOH HOH 198 B HOH 199 5 HOH HOH 199 B HOH 200 5 HOH HOH 200 B HOH 203 5 HOH HOH 203 B HOH 204 5 HOH HOH 204 B HOH 206 5 HOH HOH 206 B HOH 207 5 HOH HOH 207 B HOH 209 5 HOH HOH 209 B HOH 211 5 HOH HOH 211 B HOH 215 5 HOH HOH 215 B HOH 219 5 HOH HOH 219 B HOH 221 5 HOH HOH 221 B HOH 224 5 HOH HOH 224 B HOH 225 5 HOH HOH 225 B HOH 228 5 HOH HOH 228 B HOH 230 5 HOH HOH 230 B HOH 231 5 HOH HOH 231 B HOH 232 5 HOH HOH 232 B HOH 235 5 HOH HOH 235 B HOH 236 5 HOH HOH 236 B HOH 239 5 HOH HOH 239 B HOH 243 5 HOH HOH 243 B HOH 247 5 HOH HOH 247 B HOH 252 5 HOH HOH 252 B HOH 260 5 HOH HOH 260 B HOH 261 5 HOH HOH 261 B HOH 262 5 HOH HOH 262 B HOH 264 5 HOH HOH 264 B HOH 265 5 HOH HOH 265 B HOH 273 5 HOH HOH 273 B HOH 278 5 HOH HOH 278 B HOH 280 5 HOH HOH 280 B HOH 282 5 HOH HOH 282 B HOH 287 5 HOH HOH 287 B HOH 288 5 HOH HOH 288 B HOH 289 5 HOH HOH 289 B HOH 290 5 HOH HOH 290 B HOH 291 5 HOH HOH 291 B HOH 292 5 HOH HOH 292 B HOH 306 5 HOH HOH 306 B HOH 307 5 HOH HOH 307 B HOH 308 5 HOH HOH 308 B HOH 309 5 HOH HOH 309 B HOH 311 5 HOH HOH 311 B HOH 315 5 HOH HOH 315 B HOH 316 5 HOH HOH 316 B HOH 323 5 HOH HOH 323 B HOH 327 5 HOH HOH 327 B HOH 328 5 HOH HOH 328 B HOH 329 5 HOH HOH 329 B HOH 330 5 HOH HOH 330 B HOH 331 5 HOH HOH 331 B HOH 332 5 HOH HOH 332 B HOH 333 5 HOH HOH 333 B HOH 350 5 HOH HOH 350 B HOH 351 5 HOH HOH 351 B HOH 352 5 HOH HOH 352 B HOH 353 5 HOH HOH 353 B HOH 354 5 HOH HOH 354 B HOH 355 5 HOH HOH 355 B HOH 357 5 HOH HOH 357 B HOH 358 5 HOH HOH 358 B HOH 359 5 HOH HOH 359 B HOH 360 5 HOH HOH 360 B HOH 361 5 HOH HOH 361 B HOH 362 5 HOH HOH 362 B HOH 363 5 HOH HOH 363 B HOH 1 5 HOH HOH 504 A HOH 2 5 HOH HOH 505 A HOH 3 5 HOH HOH 506 A HOH 4 5 HOH HOH 507 A HOH 6 5 HOH HOH 508 A HOH 7 5 HOH HOH 509 A HOH 8 5 HOH HOH 510 A HOH 9 5 HOH HOH 511 A HOH 10 5 HOH HOH 512 A HOH 11 5 HOH HOH 513 A HOH 12 5 HOH HOH 514 A HOH 13 5 HOH HOH 515 A HOH 14 5 HOH HOH 516 A HOH 15 5 HOH HOH 517 A HOH 16 5 HOH HOH 518 A HOH 17 5 HOH HOH 519 A HOH 19 5 HOH HOH 520 A HOH 20 5 HOH HOH 521 A HOH 21 5 HOH HOH 522 A HOH 22 5 HOH HOH 523 A HOH 26 5 HOH HOH 524 A HOH 27 5 HOH HOH 525 A HOH 29 5 HOH HOH 526 A HOH 30 5 HOH HOH 527 A HOH 31 5 HOH HOH 528 A HOH 32 5 HOH HOH 529 A HOH 33 5 HOH HOH 530 A HOH 34 5 HOH HOH 531 A HOH 35 5 HOH HOH 532 A HOH 36 5 HOH HOH 533 A HOH 37 5 HOH HOH 534 A HOH 39 5 HOH HOH 535 A HOH 40 5 HOH HOH 536 A HOH 42 5 HOH HOH 537 A HOH 44 5 HOH HOH 538 A HOH 45 5 HOH HOH 539 A HOH 47 5 HOH HOH 540 A HOH 48 5 HOH HOH 541 A HOH 49 5 HOH HOH 542 A HOH 50 5 HOH HOH 543 A HOH 51 5 HOH HOH 544 A HOH 52 5 HOH HOH 545 A HOH 53 5 HOH HOH 546 A HOH 54 5 HOH HOH 547 A HOH 55 5 HOH HOH 548 A HOH 57 5 HOH HOH 549 A HOH 62 5 HOH HOH 550 A HOH 63 5 HOH HOH 551 A HOH 64 5 HOH HOH 552 A HOH 65 5 HOH HOH 553 A HOH 67 5 HOH HOH 554 A HOH 68 5 HOH HOH 555 A HOH 69 5 HOH HOH 556 A HOH 70 5 HOH HOH 557 A HOH 72 5 HOH HOH 558 A HOH 73 5 HOH HOH 559 A HOH 74 5 HOH HOH 560 A HOH 75 5 HOH HOH 561 A HOH 76 5 HOH HOH 562 A HOH 78 5 HOH HOH 563 A HOH 79 5 HOH HOH 564 A HOH 80 5 HOH HOH 565 A HOH 81 5 HOH HOH 566 A HOH 82 5 HOH HOH 567 A HOH 83 5 HOH HOH 568 A HOH 84 5 HOH HOH 569 A HOH 85 5 HOH HOH 570 A HOH 86 5 HOH HOH 571 A HOH 87 5 HOH HOH 572 A HOH 89 5 HOH HOH 573 A HOH 90 5 HOH HOH 574 A HOH 91 5 HOH HOH 575 A HOH 93 5 HOH HOH 576 A HOH 94 5 HOH HOH 577 A HOH 95 5 HOH HOH 578 A HOH 96 5 HOH HOH 579 A HOH 97 5 HOH HOH 580 A HOH 99 5 HOH HOH 581 A HOH 100 5 HOH HOH 582 A HOH 101 5 HOH HOH 583 A HOH 102 5 HOH HOH 584 A HOH 103 5 HOH HOH 585 A HOH 104 5 HOH HOH 586 A HOH 105 5 HOH HOH 587 A HOH 106 5 HOH HOH 588 A HOH 108 5 HOH HOH 589 A HOH 109 5 HOH HOH 590 A HOH 110 5 HOH HOH 591 A HOH 111 5 HOH HOH 592 A HOH 113 5 HOH HOH 593 A HOH 114 5 HOH HOH 594 A HOH 115 5 HOH HOH 595 A HOH 117 5 HOH HOH 596 A HOH 119 5 HOH HOH 597 A HOH 121 5 HOH HOH 598 A HOH 122 5 HOH HOH 599 A HOH 123 5 HOH HOH 600 A HOH 124 5 HOH HOH 601 A HOH 125 5 HOH HOH 602 A HOH 127 5 HOH HOH 603 A HOH 128 5 HOH HOH 604 A HOH 129 5 HOH HOH 605 A HOH 130 5 HOH HOH 606 A HOH 134 5 HOH HOH 607 A HOH 135 5 HOH HOH 608 A HOH 136 5 HOH HOH 609 A HOH 137 5 HOH HOH 610 A HOH 139 5 HOH HOH 611 A HOH 140 5 HOH HOH 612 A HOH 143 5 HOH HOH 613 A HOH 144 5 HOH HOH 614 A HOH 146 5 HOH HOH 615 A HOH 147 5 HOH HOH 616 A HOH 150 5 HOH HOH 617 A HOH 151 5 HOH HOH 618 A HOH 153 5 HOH HOH 619 A HOH 154 5 HOH HOH 620 A HOH 156 5 HOH HOH 621 A HOH 158 5 HOH HOH 622 A HOH 159 5 HOH HOH 623 A HOH 161 5 HOH HOH 624 A HOH 164 5 HOH HOH 625 A HOH 166 5 HOH HOH 626 A HOH 167 5 HOH HOH 627 A HOH 170 5 HOH HOH 628 A HOH 172 5 HOH HOH 629 A HOH 174 5 HOH HOH 630 A HOH 176 5 HOH HOH 631 A HOH 177 5 HOH HOH 632 A HOH 178 5 HOH HOH 633 A HOH 179 5 HOH HOH 634 A HOH 180 5 HOH HOH 635 A HOH 183 5 HOH HOH 636 A HOH 184 5 HOH HOH 637 A HOH 186 5 HOH HOH 638 A HOH 187 5 HOH HOH 639 A HOH 188 5 HOH HOH 640 A HOH 189 5 HOH HOH 641 A HOH 190 5 HOH HOH 642 A HOH 191 5 HOH HOH 643 A HOH 193 5 HOH HOH 644 A HOH 194 5 HOH HOH 645 A HOH 201 5 HOH HOH 646 A HOH 202 5 HOH HOH 647 A HOH 205 5 HOH HOH 648 A HOH 208 5 HOH HOH 649 A HOH 210 5 HOH HOH 650 A HOH 212 5 HOH HOH 651 A HOH 213 5 HOH HOH 652 A HOH 214 5 HOH HOH 653 A HOH 216 5 HOH HOH 654 A HOH 217 5 HOH HOH 655 A HOH 218 5 HOH HOH 656 A HOH 220 5 HOH HOH 657 A HOH 222 5 HOH HOH 658 A HOH 223 5 HOH HOH 659 A HOH 226 5 HOH HOH 660 A HOH 227 5 HOH HOH 661 A HOH 229 5 HOH HOH 662 A HOH 233 5 HOH HOH 663 A HOH 234 5 HOH HOH 664 A HOH 237 5 HOH HOH 665 A HOH 238 5 HOH HOH 666 A HOH 240 5 HOH HOH 667 A HOH 241 5 HOH HOH 668 A HOH 242 5 HOH HOH 669 A HOH 244 5 HOH HOH 670 A HOH 245 5 HOH HOH 671 A HOH 246 5 HOH HOH 672 A HOH 248 5 HOH HOH 673 A HOH 249 5 HOH HOH 674 A HOH 250 5 HOH HOH 675 A HOH 251 5 HOH HOH 676 A HOH 253 5 HOH HOH 677 A HOH 254 5 HOH HOH 678 A HOH 255 5 HOH HOH 679 A HOH 256 5 HOH HOH 680 A HOH 257 5 HOH HOH 681 A HOH 258 5 HOH HOH 682 A HOH 259 5 HOH HOH 683 A HOH 263 5 HOH HOH 684 A HOH 266 5 HOH HOH 685 A HOH 267 5 HOH HOH 686 A HOH 268 5 HOH HOH 687 A HOH 269 5 HOH HOH 688 A HOH 270 5 HOH HOH 689 A HOH 271 5 HOH HOH 690 A HOH 272 5 HOH HOH 691 A HOH 274 5 HOH HOH 692 A HOH 275 5 HOH HOH 693 A HOH 276 5 HOH HOH 694 A HOH 277 5 HOH HOH 695 A HOH 279 5 HOH HOH 696 A HOH 281 5 HOH HOH 697 A HOH 283 5 HOH HOH 698 A HOH 284 5 HOH HOH 699 A HOH 285 5 HOH HOH 700 A HOH 286 5 HOH HOH 701 A HOH 293 5 HOH HOH 702 A HOH 294 5 HOH HOH 703 A HOH 295 5 HOH HOH 704 A HOH 296 5 HOH HOH 705 A HOH 297 5 HOH HOH 706 A HOH 298 5 HOH HOH 707 A HOH 299 5 HOH HOH 708 A HOH 300 5 HOH HOH 709 A HOH 301 5 HOH HOH 710 A HOH 302 5 HOH HOH 711 A HOH 303 5 HOH HOH 712 A HOH 304 5 HOH HOH 713 A HOH 305 5 HOH HOH 714 A HOH 310 5 HOH HOH 715 A HOH 312 5 HOH HOH 716 A HOH 313 5 HOH HOH 717 A HOH 314 5 HOH HOH 718 A HOH 317 5 HOH HOH 719 A HOH 318 5 HOH HOH 720 A HOH 319 5 HOH HOH 721 A HOH 320 5 HOH HOH 722 A HOH 321 5 HOH HOH 723 A HOH 322 5 HOH HOH 724 A HOH 324 5 HOH HOH 725 A HOH 325 5 HOH HOH 726 A HOH 326 5 HOH HOH 727 A HOH 334 5 HOH HOH 728 A HOH 335 5 HOH HOH 729 A HOH 336 5 HOH HOH 730 A HOH 337 5 HOH HOH 731 A HOH 338 5 HOH HOH 732 A HOH 339 5 HOH HOH 733 A HOH 340 5 HOH HOH 734 A HOH 341 5 HOH HOH 735 A HOH 342 5 HOH HOH 736 A HOH 343 5 HOH HOH 737 A HOH 344 5 HOH HOH 738 A HOH 345 5 HOH HOH 739 A HOH 346 5 HOH HOH 740 A HOH 347 5 HOH HOH 741 A HOH 348 5 HOH HOH 742 A HOH 349 5 HOH HOH 743 A HOH 356 5 HOH HOH 744 A HOH 364 5 HOH HOH 745 A C 501 n 1 C 501 B C 502 n 2 C 502 B G 503 n 3 G 503 B G 504 n 4 G 504 B C 505 n 5 C 505 B G 506 n 6 G 506 B G 507 n 7 G 507 B U 508 n 8 U 508 B A 509 n 9 A 509 B G 510 n 10 G 510 B U 511 n 11 U 511 B U 512 n 12 U 512 B C 513 n 13 C 513 B A 514 n 14 A 514 B G 515 n 15 G 515 B C 516 n 16 C 516 B C 517 n 17 C 517 B U 518 n 18 U 518 B G 519 n 19 G 519 B G 520 n 20 G 520 B U 521 n 21 U 521 B A 522 n 22 A 522 B G 523 n 23 G 523 B A 524 n 24 A 524 B A 525 n 25 A 525 B C 526 n 26 C 526 B G 527 n 27 G 527 B G 528 n 28 G 528 B C 529 n 29 C 529 B G 530 n 30 G 530 B G 531 n 31 G 531 B A 532 n 32 A 532 B C 533 n 33 C 533 B U 534 n 34 U 534 B G 535 n 35 G 535 B U 536 n 36 U 536 B A 537 n 37 A 537 B G 538 n 38 G 538 B A 539 n 39 A 539 B U 540 n 40 U 540 B C 541 n 41 C 541 B C 542 n 42 C 542 B G 543 n 43 G 543 B C 544 n 44 C 544 B A 545 n 45 A 545 B U 546 n 46 U 546 B G 547 n 47 G 547 B U 548 n 48 U 548 B C 549 n 49 C 549 B G 550 n 50 G 550 B C 551 n 51 C 551 B U 552 n 52 U 552 B G 553 n 53 G 553 B G 554 n 54 G 554 B U 555 n 55 U 555 B U 556 n 56 U 556 B C 557 n 57 C 557 B A 558 n 58 A 558 B A 559 n 59 A 559 B A 560 n 60 A 560 B U 561 n 61 U 561 B C 562 n 62 C 562 B C 563 n 63 C 563 B G 564 n 64 G 564 B G 565 n 65 G 565 B C 566 n 66 C 566 B C 567 n 67 C 567 B C 568 n 68 C 568 B G 569 n 69 G 569 B C 570 n 70 C 570 B C 571 n 71 C 571 B G 572 n 72 G 572 B G 573 n 73 G 573 B A 574 n 74 A 574 B n 75 575 B n 76 576 B n 77 577 B MET 1 n 1 MET 1 A ASP 2 n 2 ASP 2 A GLU 3 n 3 GLU 3 A PHE 4 n 4 PHE 4 A GLU 5 n 5 GLU 5 A MET 6 n 6 MET 6 A ILE 7 n 7 ILE 7 A LYS 8 n 8 LYS 8 A ARG 9 n 9 ARG 9 A ASN 10 n 10 ASN 10 A THR 11 n 11 THR 11 A SER 12 n 12 SER 12 A GLU 13 n 13 GLU 13 A ILE 14 n 14 ILE 14 A ILE 15 n 15 ILE 15 A SER 16 n 16 SER 16 A GLU 17 n 17 GLU 17 A GLU 18 n 18 GLU 18 A GLU 19 n 19 GLU 19 A LEU 20 n 20 LEU 20 A ARG 21 n 21 ARG 21 A GLU 22 n 22 GLU 22 A VAL 23 n 23 VAL 23 A LEU 24 n 24 LEU 24 A LYS 25 n 25 LYS 25 A LYS 26 n 26 LYS 26 A ASP 27 n 27 ASP 27 A GLU 28 n 28 GLU 28 A LYS 29 n 29 LYS 29 A SER 30 n 30 SER 30 A ALA 31 n 31 ALA 31 A TYR 32 n 32 TYR 32 A ILE 33 n 33 ILE 33 A GLY 34 n 34 GLY 34 A PHE 35 n 35 PHE 35 A GLU 36 n 36 GLU 36 A PRO 37 n 37 PRO 37 A SER 38 n 38 SER 38 A GLY 39 n 39 GLY 39 A LYS 40 n 40 LYS 40 A ILE 41 n 41 ILE 41 A HIS 42 n 42 HIS 42 A LEU 43 n 43 LEU 43 A GLY 44 n 44 GLY 44 A HIS 45 n 45 HIS 45 A TYR 46 n 46 TYR 46 A LEU 47 n 47 LEU 47 A GLN 48 n 48 GLN 48 A ILE 49 n 49 ILE 49 A LYS 50 n 50 LYS 50 A LYS 51 n 51 LYS 51 A MET 52 n 52 MET 52 A ILE 53 n 53 ILE 53 A ASP 54 n 54 ASP 54 A LEU 55 n 55 LEU 55 A GLN 56 n 56 GLN 56 A ASN 57 n 57 ASN 57 A ALA 58 n 58 ALA 58 A GLY 59 n 59 GLY 59 A PHE 60 n 60 PHE 60 A ASP 61 n 61 ASP 61 A ILE 62 n 62 ILE 62 A ILE 63 n 63 ILE 63 A ILE 64 n 64 ILE 64 A LEU 65 n 65 LEU 65 A LEU 66 n 66 LEU 66 A ALA 67 n 67 ALA 67 A ASP 68 n 68 ASP 68 A LEU 69 n 69 LEU 69 A HIS 70 n 70 HIS 70 A ALA 71 n 71 ALA 71 A TYR 72 n 72 TYR 72 A LEU 73 n 73 LEU 73 A ASN 74 n 74 ASN 74 A GLN 75 n 75 GLN 75 A LYS 76 n 76 LYS 76 A GLY 77 n 77 GLY 77 A GLU 78 n 78 GLU 78 A LEU 79 n 79 LEU 79 A ASP 80 n 80 ASP 80 A GLU 81 n 81 GLU 81 A ILE 82 n 82 ILE 82 A ARG 83 n 83 ARG 83 A LYS 84 n 84 LYS 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ASP 87 n 87 ASP 87 A TYR 88 n 88 TYR 88 A ASN 89 n 89 ASN 89 A LYS 90 n 90 LYS 90 A LYS 91 n 91 LYS 91 A VAL 92 n 92 VAL 92 A PHE 93 n 93 PHE 93 A GLU 94 n 94 GLU 94 A ALA 95 n 95 ALA 95 A MET 96 n 96 MET 96 A GLY 97 n 97 GLY 97 A LEU 98 n 98 LEU 98 A LYS 99 n 99 LYS 99 A ALA 100 n 100 ALA 100 A LYS 101 n 101 LYS 101 A TYR 102 n 102 TYR 102 A VAL 103 n 103 VAL 103 A TYR 104 n 104 TYR 104 A GLY 105 n 105 GLY 105 A SER 106 n 106 SER 106 A GLU 107 n 107 GLU 107 A PHE 108 n 108 PHE 108 A GLN 109 n 109 GLN 109 A LEU 110 n 110 LEU 110 A ASP 111 n 111 ASP 111 A LYS 112 n 112 LYS 112 A ASP 113 n 113 ASP 113 A TYR 114 n 114 TYR 114 A THR 115 n 115 THR 115 A LEU 116 n 116 LEU 116 A ASN 117 n 117 ASN 117 A VAL 118 n 118 VAL 118 A TYR 119 n 119 TYR 119 A ARG 120 n 120 ARG 120 A LEU 121 n 121 LEU 121 A ALA 122 n 122 ALA 122 A LEU 123 n 123 LEU 123 A LYS 124 n 124 LYS 124 A THR 125 n 125 THR 125 A THR 126 n 126 THR 126 A LEU 127 n 127 LEU 127 A LYS 128 n 128 LYS 128 A ARG 129 n 129 ARG 129 A ALA 130 n 130 ALA 130 A ARG 131 n 131 ARG 131 A ARG 132 n 132 ARG 132 A SER 133 n 133 SER 133 A MET 134 n 134 MET 134 A GLU 135 n 135 GLU 135 A LEU 136 n 136 LEU 136 A ILE 137 n 137 ILE 137 A ALA 138 n 138 ALA 138 A ARG 139 n 139 ARG 139 A GLU 140 n 140 GLU 140 A ASP 141 n 141 ASP 141 A GLU 142 n 142 GLU 142 A ASN 143 n 143 ASN 143 A PRO 144 n 144 PRO 144 A LYS 145 n 145 LYS 145 A VAL 146 n 146 VAL 146 A ALA 147 n 147 ALA 147 A GLU 148 n 148 GLU 148 A VAL 149 n 149 VAL 149 A ILE 150 n 150 ILE 150 A TYR 151 n 151 TYR 151 A PRO 152 n 152 PRO 152 A ILE 153 n 153 ILE 153 A MET 154 n 154 MET 154 A GLN 155 n 155 GLN 155 A VAL 156 n 156 VAL 156 A ASN 157 n 157 ASN 157 A ASP 158 n 158 ASP 158 A ILE 159 n 159 ILE 159 A HIS 160 n 160 HIS 160 A TYR 161 n 161 TYR 161 A LEU 162 n 162 LEU 162 A GLY 163 n 163 GLY 163 A VAL 164 n 164 VAL 164 A ASP 165 n 165 ASP 165 A VAL 166 n 166 VAL 166 A ALA 167 n 167 ALA 167 A VAL 168 n 168 VAL 168 A GLY 169 n 169 GLY 169 A GLY 170 n 170 GLY 170 A MET 171 n 171 MET 171 A GLU 172 n 172 GLU 172 A GLN 173 n 173 GLN 173 A ARG 174 n 174 ARG 174 A LYS 175 n 175 LYS 175 A ILE 176 n 176 ILE 176 A HIS 177 n 177 HIS 177 A MET 178 n 178 MET 178 A LEU 179 n 179 LEU 179 A ALA 180 n 180 ALA 180 A ARG 181 n 181 ARG 181 A GLU 182 n 182 GLU 182 A LEU 183 n 183 LEU 183 A LEU 184 n 184 LEU 184 A PRO 185 n 185 PRO 185 A LYS 186 n 186 LYS 186 A LYS 187 n 187 LYS 187 A VAL 188 n 188 VAL 188 A VAL 189 n 189 VAL 189 A CYS 190 n 190 CYS 190 A ILE 191 n 191 ILE 191 A HIS 192 n 192 HIS 192 A ASN 193 n 193 ASN 193 A PRO 194 n 194 PRO 194 A VAL 195 n 195 VAL 195 A LEU 196 n 196 LEU 196 A THR 197 n 197 THR 197 A GLY 198 n 198 GLY 198 A LEU 199 n 199 LEU 199 A ASP 200 n 200 ASP 200 A GLY 201 n 201 GLY 201 A GLU 202 n 202 GLU 202 A n 203 203 A n 204 204 A n 205 205 A n 206 206 A n 207 207 A n 208 208 A n 209 209 A GLY 210 n 210 GLY 210 A ASN 211 n 211 ASN 211 A PHE 212 n 212 PHE 212 A ILE 213 n 213 ILE 213 A ALA 214 n 214 ALA 214 A VAL 215 n 215 VAL 215 A ASP 216 n 216 ASP 216 A ASP 217 n 217 ASP 217 A SER 218 n 218 SER 218 A PRO 219 n 219 PRO 219 A GLU 220 n 220 GLU 220 A GLU 221 n 221 GLU 221 A ILE 222 n 222 ILE 222 A ARG 223 n 223 ARG 223 A ALA 224 n 224 ALA 224 A LYS 225 n 225 LYS 225 A ILE 226 n 226 ILE 226 A LYS 227 n 227 LYS 227 A LYS 228 n 228 LYS 228 A ALA 229 n 229 ALA 229 A TYR 230 n 230 TYR 230 A CYS 231 n 231 CYS 231 A PRO 232 n 232 PRO 232 A ALA 233 n 233 ALA 233 A GLY 234 n 234 GLY 234 A VAL 235 n 235 VAL 235 A VAL 236 n 236 VAL 236 A GLU 237 n 237 GLU 237 A GLY 238 n 238 GLY 238 A ASN 239 n 239 ASN 239 A PRO 240 n 240 PRO 240 A ILE 241 n 241 ILE 241 A MET 242 n 242 MET 242 A GLU 243 n 243 GLU 243 A ILE 244 n 244 ILE 244 A ALA 245 n 245 ALA 245 A LYS 246 n 246 LYS 246 A TYR 247 n 247 TYR 247 A PHE 248 n 248 PHE 248 A LEU 249 n 249 LEU 249 A GLU 250 n 250 GLU 250 A TYR 251 n 251 TYR 251 A PRO 252 n 252 PRO 252 A LEU 253 n 253 LEU 253 A THR 254 n 254 THR 254 A ILE 255 n 255 ILE 255 A LYS 256 n 256 LYS 256 A ARG 257 n 257 ARG 257 A PRO 258 n 258 PRO 258 A GLU 259 n 259 GLU 259 A LYS 260 n 260 LYS 260 A PHE 261 n 261 PHE 261 A GLY 262 n 262 GLY 262 A GLY 263 n 263 GLY 263 A ASP 264 n 264 ASP 264 A LEU 265 n 265 LEU 265 A THR 266 n 266 THR 266 A VAL 267 n 267 VAL 267 A ASN 268 n 268 ASN 268 A SER 269 n 269 SER 269 A TYR 270 n 270 TYR 270 A GLU 271 n 271 GLU 271 A GLU 272 n 272 GLU 272 A LEU 273 n 273 LEU 273 A GLU 274 n 274 GLU 274 A SER 275 n 275 SER 275 A LEU 276 n 276 LEU 276 A PHE 277 n 277 PHE 277 A LYS 278 n 278 LYS 278 A ASN 279 n 279 ASN 279 A LYS 280 n 280 LYS 280 A GLU 281 n 281 GLU 281 A LEU 282 n 282 LEU 282 A HIS 283 n 283 HIS 283 A PRO 284 n 284 PRO 284 A MET 285 n 285 MET 285 A ASP 286 n 286 ASP 286 A LEU 287 n 287 LEU 287 A LYS 288 n 288 LYS 288 A ASN 289 n 289 ASN 289 A ALA 290 n 290 ALA 290 A VAL 291 n 291 VAL 291 A ALA 292 n 292 ALA 292 A GLU 293 n 293 GLU 293 A GLU 294 n 294 GLU 294 A LEU 295 n 295 LEU 295 A ILE 296 n 296 ILE 296 A LYS 297 n 297 LYS 297 A ILE 298 n 298 ILE 298 A LEU 299 n 299 LEU 299 A GLU 300 n 300 GLU 300 A PRO 301 n 301 PRO 301 A ILE 302 n 302 ILE 302 A ARG 303 n 303 ARG 303 A LYS 304 n 304 LYS 304 A ARG 305 n 305 ARG 305 A LEU 306 n 306 LEU 306 A author_defined_assembly 4 tetrameric B HOH 18 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 77 H O HOH 1_555 167.8 B HOH 18 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 278 H O HOH 1_555 90.2 B HOH 77 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 278 H O HOH 1_555 86.3 B HOH 18 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 359 H O HOH 1_555 88.4 B HOH 77 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 359 H O HOH 1_555 103.9 B HOH 278 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 359 H O HOH 1_555 106.5 B HOH 18 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 360 H O HOH 1_555 83.5 B HOH 77 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 360 H O HOH 1_555 84.6 B HOH 278 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 360 H O HOH 1_555 87.6 B HOH 359 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 360 H O HOH 1_555 163.8 B HOH 18 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 361 H O HOH 1_555 78.4 B HOH 77 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 361 H O HOH 1_555 103.7 B HOH 278 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 361 H O HOH 1_555 167.5 B HOH 359 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 361 H O HOH 1_555 78.6 B HOH 360 H O HOH 1_555 B MG 1503 E MG MG 1_555 B HOH 361 H O HOH 1_555 86.0 B HOH 60 H O HOH 1_555 B MG 1501 C MG MG 1_555 B HOH 350 H O HOH 1_555 94.2 B HOH 60 H O HOH 1_555 B MG 1501 C MG MG 1_555 B A 509 A OP1 A 9 1_555 81.5 B HOH 350 H O HOH 1_555 B MG 1501 C MG MG 1_555 B A 509 A OP1 A 9 1_555 105.1 B HOH 60 H O HOH 1_555 B MG 1501 C MG MG 1_555 B G 510 A OP2 G 10 1_555 72.2 B HOH 350 H O HOH 1_555 B MG 1501 C MG MG 1_555 B G 510 A OP2 G 10 1_555 153.8 B A 509 A OP1 A 9 1_555 B MG 1501 C MG MG 1_555 B G 510 A OP2 G 10 1_555 95.1 B HOH 60 H O HOH 1_555 B MG 1501 C MG MG 1_555 B U 548 A OP1 U 48 1_555 159.9 B HOH 350 H O HOH 1_555 B MG 1501 C MG MG 1_555 B U 548 A OP1 U 48 1_555 89.7 B A 509 A OP1 A 9 1_555 B MG 1501 C MG MG 1_555 B U 548 A OP1 U 48 1_555 116.5 B G 510 A OP2 G 10 1_555 B MG 1501 C MG MG 1_555 B U 548 A OP1 U 48 1_555 96.0 B HOH 61 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 288 H O HOH 1_555 86.9 B HOH 61 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 289 H O HOH 1_555 82.7 B HOH 288 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 289 H O HOH 1_555 169.3 B HOH 61 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 290 H O HOH 1_555 89.7 B HOH 288 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 290 H O HOH 1_555 83.4 B HOH 289 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 290 H O HOH 1_555 94.7 B HOH 61 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 291 H O HOH 1_555 92.3 B HOH 288 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 291 H O HOH 1_555 87.7 B HOH 289 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 291 H O HOH 1_555 94.5 B HOH 290 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 291 H O HOH 1_555 170.8 B HOH 61 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 292 H O HOH 1_555 166.4 B HOH 288 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 292 H O HOH 1_555 85.0 B HOH 289 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 292 H O HOH 1_555 104.9 B HOH 290 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 292 H O HOH 1_555 78.5 B HOH 291 H O HOH 1_555 B MG 1502 D MG MG 1_555 B HOH 292 H O HOH 1_555 98.3 A HIS 160 B NE2 HIS 160 1_555 A MG 503 F MG MG 1_555 A HOH 722 I O HOH 1_555 112.0 A HIS 160 B NE2 HIS 160 1_555 A MG 503 F MG MG 1_555 A HOH 723 I O HOH 1_555 108.4 A HOH 722 I O HOH 1_555 A MG 503 F MG MG 1_555 A HOH 723 I O HOH 1_555 123.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_556 y,x,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 156.0750000000 A N ILE 15 B N ILE 15 A O CYS 190 B O CYS 190 A O VAL 189 B O VAL 189 A N ALA 167 B N ALA 167 A O VAL 168 B O VAL 168 A N TYR 32 B N TYR 32 A N ILE 33 B N ILE 33 A O LEU 65 B O LEU 65 A N LEU 66 B N LEU 66 A O VAL 103 B O VAL 103 A N ILE 255 B N ILE 255 A O LEU 265 B O LEU 265 1 A HOH 730 I HOH 1 A HOH 745 I HOH 1 B C 575 A C 75 1 Y 1 B C 576 A C 76 1 Y 1 B A 577 A A 77 1 Y 1 A GLY 203 B GLY 203 1 Y 1 A LYS 204 B LYS 204 1 Y 1 A MET 205 B MET 205 1 Y 1 A SER 206 B SER 206 1 Y 1 A SER 207 B SER 207 1 Y 1 A SER 208 B SER 208 1 Y 1 A LYS 209 B LYS 209 1 Y 1 A A NH1 O ARG HOH 129 716 1.87 1 A A O O HOH HOH 504 706 1.91 1 A A O O HOH HOH 704 738 1.91 1 A A O O HOH HOH 528 732 1.97 1 A A O O HOH HOH 724 728 1.99 1 A A O O HOH HOH 724 729 2.00 1 A A O O HOH HOH 507 706 2.00 1 A A O O HOH HOH 519 713 2.00 1 A A O O HOH HOH 542 721 2.06 1 B B O3' O A HOH 574 282 2.13 1 A A O O HOH HOH 553 704 2.17 1 A A O O HOH HOH 740 742 2.18 1 B B OP1 O G HOH 564 38 2.19 1 B C 501 0.072 SIDE CHAIN 1 B G 504 0.062 SIDE CHAIN 1 B U 518 0.097 SIDE CHAIN 1 B G 520 0.071 SIDE CHAIN 1 B U 534 0.212 SIDE CHAIN 1 B A 539 0.054 SIDE CHAIN 1 B C 542 0.066 SIDE CHAIN 1 B U 546 0.119 SIDE CHAIN 1 A ARG 129 0.117 SIDE CHAIN 1 -12.73 2.10 109.40 96.67 B B B C4' C3' O3' G G G 519 519 519 N 1 9.81 1.30 114.00 123.81 B B B N1 C1' C2' U U U 534 534 534 N 1 8.41 1.30 114.00 122.41 B B B N9 C1' C2' G G G 547 547 547 N 1 6.93 1.10 110.50 117.43 B B B O3' P OP1 G U U 547 548 548 Y 1 7.67 1.10 110.50 118.17 B B B O3' P OP1 C G G 549 550 550 Y 1 -11.77 1.40 115.20 103.43 B B B C5' C4' C3' G G G 553 553 553 N 1 9.17 1.10 110.50 119.67 B B B O3' P OP2 C G G 571 572 572 Y 1 3.07 0.50 120.30 123.37 A A A NE CZ NH1 ARG ARG ARG 181 181 181 N 1 -14.74 1.90 111.40 96.66 A A A CB CA C VAL VAL VAL 188 188 188 N 1 9.76 1.60 110.90 120.66 A A A CG1 CB CG2 VAL VAL VAL 188 188 188 N 1 -3.81 0.50 120.30 116.49 A A A NE CZ NH2 ARG ARG ARG 257 257 257 N 1 B B O5' C5' G G 553 553 -0.087 0.009 1.420 1.333 N 1 B B N1 C2 C C 562 562 -0.072 0.010 1.397 1.325 N 1 A A CE2 CD2 TYR TYR 72 72 0.111 0.015 1.389 1.500 N 1 A A CG CD GLU GLU 135 135 0.121 0.015 1.515 1.636 N 1 A A CD CE LYS LYS 145 145 0.155 0.025 1.508 1.663 N 1 A A CB CG2 VAL VAL 166 166 0.149 0.021 1.524 1.673 N 1 A A CG CD GLU GLU 237 237 0.094 0.015 1.515 1.609 N 1 A A CG CD GLU GLU 293 293 0.097 0.015 1.515 1.612 N 1 A ASP 2 94.53 112.88 1 A HIS 42 -115.72 -168.81 1 A ASN 211 -65.21 13.08 1 A CYS 231 -163.50 79.61 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP CIS_PEPTIDE.PARAM 43.6 3.86 3.02 0.00 3.86 0.00 -7.72 The bond distance between SD and CE in MET A 134 is slightly long. 0.239 0.003 0.188 0.188 1.95 34.63 4982 50210 49545 10.1 98.6 RANDOM 1657649.24 0.000000 1 RESTRAINED THROUGHOUT 0 0 SAD Engh & Huber FLAT MODEL 62.7078 0.356068 0.27 0.20 5.00 0.25 0.22 1.95 34.63 364 4373 17 1578 2414 0.026 2.2 21.4 1.95 4.48 1.50 5.07 2.00 6.27 2.00 8.22 2.50 0.299 0.011 0.258 2.07 807 7049 6 10.3 94.7 23.1 1.95 50 1J1U 50210 49557 0 0 0.071 0.071 1,2 30.9 8.5 98.7 0.282 1.95 1.98 2.2 2302 0.282 2.9 93.1 refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK phasing MLPHARE Crystal structure of archaeal tyrosyl-tRNA synthetase complexed with tRNA(Tyr) and L-tyrosine 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 4 N N 5 N N 5 N N The second part of the biological assembly is generated by the two fold axis: y,x,-z+1 A ASP 2 B ASP 2 HELX_P A ARG 9 B ARG 9 1 1 8 A SER 16 B SER 16 HELX_P A LYS 25 B LYS 25 1 2 10 A HIS 42 B HIS 42 HELX_P A ALA 58 B ALA 58 1 3 17 A ALA 67 B ALA 67 HELX_P A ASN 74 B ASN 74 1 4 8 A GLU 78 B GLU 78 HELX_P A MET 96 B MET 96 1 5 19 A SER 106 B SER 106 HELX_P A PHE 108 B PHE 108 5 6 3 A ASP 111 B ASP 111 HELX_P A THR 125 B THR 125 1 7 15 A THR 126 B THR 126 HELX_P A MET 134 B MET 134 1 8 9 A VAL 146 B VAL 146 HELX_P A GLY 163 B GLY 163 1 9 18 A GLN 173 B GLN 173 HELX_P A LEU 184 B LEU 184 1 10 12 A SER 218 B SER 218 HELX_P A ALA 229 B ALA 229 1 11 12 A ASN 239 B ASN 239 HELX_P A PHE 248 B PHE 248 1 12 10 A PRO 258 B PRO 258 HELX_P A GLY 262 B GLY 262 5 13 5 A SER 269 B SER 269 HELX_P A ASN 279 B ASN 279 1 14 11 A HIS 283 B HIS 283 HELX_P A ARG 305 B ARG 305 1 15 23 metalc 2.236 B HOH 18 H O HOH 1_555 B MG 1503 E MG MG 1_555 metalc 2.398 B HOH 60 H O HOH 1_555 B MG 1501 C MG MG 1_555 metalc 2.047 B HOH 61 H O HOH 1_555 B MG 1502 D MG MG 1_555 metalc 2.309 B HOH 77 H O HOH 1_555 B MG 1503 E MG MG 1_555 metalc 2.047 B HOH 278 H O HOH 1_555 B MG 1503 E MG MG 1_555 metalc 2.111 B HOH 288 H O HOH 1_555 B MG 1502 D MG MG 1_555 metalc 2.151 B HOH 289 H O HOH 1_555 B MG 1502 D MG MG 1_555 metalc 2.348 B HOH 290 H O HOH 1_555 B MG 1502 D MG MG 1_555 metalc 2.208 B HOH 291 H O HOH 1_555 B MG 1502 D MG MG 1_555 metalc 2.149 B HOH 292 H O HOH 1_555 B MG 1502 D MG MG 1_555 metalc 2.192 B HOH 350 H O HOH 1_555 B MG 1501 C MG MG 1_555 metalc 2.203 B HOH 359 H O HOH 1_555 B MG 1503 E MG MG 1_555 metalc 2.403 B HOH 360 H O HOH 1_555 B MG 1503 E MG MG 1_555 metalc 2.593 B HOH 361 H O HOH 1_555 B MG 1503 E MG MG 1_555 metalc 2.083 B A 509 A OP1 A 9 1_555 B MG 1501 C MG MG 1_555 metalc 2.240 B G 510 A OP2 G 10 1_555 B MG 1501 C MG MG 1_555 metalc 2.411 B U 548 A OP1 U 48 1_555 B MG 1501 C MG MG 1_555 metalc 2.166 A HIS 160 B NE2 HIS 160 1_555 A MG 503 F MG MG 1_555 metalc 2.341 A MG 503 F MG MG 1_555 A HOH 722 I O HOH 1_555 metalc 2.091 A MG 503 F MG MG 1_555 A HOH 723 I O HOH 1_555 hydrog WATSON-CRICK B C 501 A N3 C 1 1_555 B G 573 A N1 G 73 1_555 hydrog WATSON-CRICK B C 501 A N4 C 1 1_555 B G 573 A O6 G 73 1_555 hydrog WATSON-CRICK B C 501 A O2 C 1 1_555 B G 573 A N2 G 73 1_555 hydrog WATSON-CRICK B C 502 A N3 C 2 1_555 B G 572 A N1 G 72 1_555 hydrog WATSON-CRICK B C 502 A N4 C 2 1_555 B G 572 A O6 G 72 1_555 hydrog WATSON-CRICK B C 502 A O2 C 2 1_555 B G 572 A N2 G 72 1_555 hydrog WATSON-CRICK B G 503 A N1 G 3 1_555 B C 571 A N3 C 71 1_555 hydrog WATSON-CRICK B G 503 A N2 G 3 1_555 B C 571 A O2 C 71 1_555 hydrog WATSON-CRICK B G 503 A O6 G 3 1_555 B C 571 A N4 C 71 1_555 hydrog WATSON-CRICK B G 504 A N1 G 4 1_555 B C 570 A N3 C 70 1_555 hydrog WATSON-CRICK B G 504 A N2 G 4 1_555 B C 570 A O2 C 70 1_555 hydrog WATSON-CRICK B G 504 A O6 G 4 1_555 B C 570 A N4 C 70 1_555 hydrog WATSON-CRICK B C 505 A N3 C 5 1_555 B G 569 A N1 G 69 1_555 hydrog WATSON-CRICK B C 505 A N4 C 5 1_555 B G 569 A O6 G 69 1_555 hydrog WATSON-CRICK B C 505 A O2 C 5 1_555 B G 569 A N2 G 69 1_555 hydrog WATSON-CRICK B G 506 A N1 G 6 1_555 B C 568 A N3 C 68 1_555 hydrog WATSON-CRICK B G 506 A N2 G 6 1_555 B C 568 A O2 C 68 1_555 hydrog WATSON-CRICK B G 506 A O6 G 6 1_555 B C 568 A N4 C 68 1_555 hydrog WATSON-CRICK B G 507 A N1 G 7 1_555 B C 567 A N3 C 67 1_555 hydrog WATSON-CRICK B G 507 A N2 G 7 1_555 B C 567 A O2 C 67 1_555 hydrog WATSON-CRICK B G 507 A O6 G 7 1_555 B C 567 A N4 C 67 1_555 hydrog REVERSED HOOGSTEEN B U 508 A N3 U 8 1_555 B A 514 A N7 A 14 1_555 hydrog REVERSED HOOGSTEEN B U 508 A O2 U 8 1_555 B A 514 A N6 A 14 1_555 hydrog TYPE_2_PAIR B A 509 A N6 A 9 1_555 B A 524 A N7 A 24 1_555 hydrog TYPE_2_PAIR B A 509 A N7 A 9 1_555 B A 524 A N6 A 24 1_555 hydrog WATSON-CRICK B G 510 A N1 G 10 1_555 B C 526 A N3 C 26 1_555 hydrog WATSON-CRICK B G 510 A N2 G 10 1_555 B C 526 A O2 C 26 1_555 hydrog WATSON-CRICK B G 510 A O6 G 10 1_555 B C 526 A N4 C 26 1_555 hydrog G-U MISPAIR B G 510 A O6 G 10 1_555 B U 546 A N3 U 46 1_555 hydrog WATSON-CRICK B U 511 A N3 U 11 1_555 B A 525 A N1 A 25 1_555 hydrog WATSON-CRICK B U 511 A O4 U 11 1_555 B A 525 A N6 A 25 1_555 hydrog WATSON-CRICK B U 512 A N3 U 12 1_555 B A 524 A N1 A 24 1_555 hydrog WATSON-CRICK B U 512 A O4 U 12 1_555 B A 524 A N6 A 24 1_555 hydrog WATSON-CRICK B C 513 A N3 C 13 1_555 B G 523 A N1 G 23 1_555 hydrog WATSON-CRICK B C 513 A N4 C 13 1_555 B G 523 A O6 G 23 1_555 hydrog WATSON-CRICK B C 513 A O2 C 13 1_555 B G 523 A N2 G 23 1_555 hydrog A-A MISPAIR B A 514 A N6 A 14 1_555 B A 522 A N3 A 22 1_555 hydrog REVERSED WATSON-CRICK B G 515 A N1 G 15 1_555 B C 549 A O2 C 49 1_555 hydrog REVERSED WATSON-CRICK B G 515 A N2 G 15 1_555 B C 549 A N3 C 49 1_555 hydrog G-U MISPAIR B G 519 A N1 G 19 1_555 B U 556 A O2 U 56 1_555 hydrog WATSON-CRICK B G 520 A N1 G 20 1_555 B C 557 A N3 C 57 1_555 hydrog WATSON-CRICK B G 520 A N2 G 20 1_555 B C 557 A O2 C 57 1_555 hydrog WATSON-CRICK B G 520 A O6 G 20 1_555 B C 557 A N4 C 57 1_555 hydrog TYPE_7_PAIR B G 523 A N7 G 23 1_555 B G 547 A N1 G 47 1_555 hydrog TYPE_7_PAIR B G 523 A O6 G 23 1_555 B G 547 A N2 G 47 1_555 hydrog C-U MISPAIR B C 526 A N4 C 26 1_555 B U 546 A O4 U 46 1_555 hydrog TYPE_8_PAIR B G 527 A N1 G 27 1_555 B A 545 A N1 A 45 1_555 hydrog TYPE_8_PAIR B G 527 A O6 G 27 1_555 B A 545 A N6 A 45 1_555 hydrog WATSON-CRICK B G 528 A N1 G 28 1_555 B C 544 A N3 C 44 1_555 hydrog WATSON-CRICK B G 528 A N2 G 28 1_555 B C 544 A O2 C 44 1_555 hydrog WATSON-CRICK B G 528 A O6 G 28 1_555 B C 544 A N4 C 44 1_555 hydrog WATSON-CRICK B C 529 A N3 C 29 1_555 B G 543 A N1 G 43 1_555 hydrog WATSON-CRICK B C 529 A N4 C 29 1_555 B G 543 A O6 G 43 1_555 hydrog WATSON-CRICK B C 529 A O2 C 29 1_555 B G 543 A N2 G 43 1_555 hydrog WATSON-CRICK B G 530 A N1 G 30 1_555 B C 542 A N3 C 42 1_555 hydrog WATSON-CRICK B G 530 A N2 G 30 1_555 B C 542 A O2 C 42 1_555 hydrog WATSON-CRICK B G 530 A O6 G 30 1_555 B C 542 A N4 C 42 1_555 hydrog G-C PAIR B G 531 A N1 G 31 1_555 B C 541 A N3 C 41 1_555 hydrog WATSON-CRICK B A 532 A N1 A 32 1_555 B U 540 A N3 U 40 1_555 hydrog WATSON-CRICK B A 532 A N6 A 32 1_555 B U 540 A O4 U 40 1_555 hydrog C-A MISPAIR B C 533 A O2 C 33 1_555 B A 539 A N6 A 39 1_555 hydrog U-A PAIR B U 534 A N3 U 34 1_555 B A 537 A N7 A 37 1_555 hydrog WATSON-CRICK B G 550 A N1 G 50 1_555 B C 566 A N3 C 66 1_555 hydrog WATSON-CRICK B G 550 A N2 G 50 1_555 B C 566 A O2 C 66 1_555 hydrog WATSON-CRICK B G 550 A O6 G 50 1_555 B C 566 A N4 C 66 1_555 hydrog WATSON-CRICK B C 551 A N3 C 51 1_555 B G 565 A N1 G 65 1_555 hydrog WATSON-CRICK B C 551 A N4 C 51 1_555 B G 565 A O6 G 65 1_555 hydrog WATSON-CRICK B C 551 A O2 C 51 1_555 B G 565 A N2 G 65 1_555 hydrog TYPE_28_PAIR B U 552 A N3 U 52 1_555 B G 564 A O6 G 64 1_555 hydrog TYPE_28_PAIR B U 552 A O2 U 52 1_555 B G 564 A N1 G 64 1_555 hydrog WATSON-CRICK B G 553 A N1 G 53 1_555 B C 563 A N3 C 63 1_555 hydrog WATSON-CRICK B G 553 A N2 G 53 1_555 B C 563 A O2 C 63 1_555 hydrog WATSON-CRICK B G 553 A O6 G 53 1_555 B C 563 A N4 C 63 1_555 hydrog WATSON-CRICK B G 554 A N1 G 54 1_555 B C 562 A N3 C 62 1_555 hydrog WATSON-CRICK B G 554 A N2 G 54 1_555 B C 562 A O2 C 62 1_555 hydrog WATSON-CRICK B G 554 A O6 G 54 1_555 B C 562 A N4 C 62 1_555 hydrog REVERSED HOOGSTEEN B U 555 A N3 U 55 1_555 B A 559 A N7 A 59 1_555 hydrog REVERSED HOOGSTEEN B U 555 A O2 U 55 1_555 B A 559 A N6 A 59 1_555 ligase/RNA Aminoacyl-tRNA synthetase, ligase, tRNA, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, ligase-RNA COMPLEX A ILE 15 B ILE 15 1 A SER 16 B SER 16 -0.20 A TYR 251 B TYR 251 1 A PRO 252 B PRO 252 -0.25 SYY_METJA UNP 2 1 Q57834 MDEFEMIKRNTSEIISEEELREVLKKDEKSAYIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIIILLADLHAYLNQKGELD EIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNDIH YLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNP IMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIRKRL 1J1U PDB 1 1J1U 1 306 1J1U 1 306 Q57834 A 1 1 306 501 577 1J1U 501 577 1J1U B 2 1 77 6 2 anti-parallel parallel parallel parallel parallel anti-parallel A GLU 13 B GLU 13 A ILE 15 B ILE 15 A VAL 189 B VAL 189 A ASN 193 B ASN 193 A VAL 166 B VAL 166 A GLY 170 B GLY 170 A LYS 29 B LYS 29 A PHE 35 B PHE 35 A PHE 60 B PHE 60 A LEU 66 B LEU 66 A LYS 101 B LYS 101 A TYR 104 B TYR 104 A LEU 253 B LEU 253 A ILE 255 B ILE 255 A LEU 265 B LEU 265 A VAL 267 B VAL 267 BINDING SITE FOR RESIDUE MG B 1501 B MG 1501 Software 5 BINDING SITE FOR RESIDUE MG B 1502 B MG 1502 Software 6 BINDING SITE FOR RESIDUE MG A 503 A MG 503 Software 3 BINDING SITE FOR RESIDUE MG B 1503 B MG 1503 Software 6 BINDING SITE FOR RESIDUE TYR A 401 A TYR 401 Software 12 B HOH 60 H HOH 5 1_555 B HOH 350 H HOH 5 1_555 B A 509 A A 9 5 1_555 B G 510 A G 10 5 1_555 B U 548 A U 48 5 1_555 B HOH 61 H HOH 6 1_555 B HOH 288 H HOH 6 1_555 B HOH 289 H HOH 6 1_555 B HOH 290 H HOH 6 1_555 B HOH 291 H HOH 6 1_555 B HOH 292 H HOH 6 1_555 A HIS 160 B HIS 160 3 1_555 A HOH 722 I HOH 3 1_555 A HOH 723 I HOH 3 1_555 B HOH 18 H HOH 6 1_555 B HOH 77 H HOH 6 1_555 B HOH 278 H HOH 6 1_555 B HOH 359 H HOH 6 1_555 B HOH 360 H HOH 6 1_555 B HOH 361 H HOH 6 1_555 A TYR 32 B TYR 32 12 1_555 A GLY 34 B GLY 34 12 1_555 A GLU 36 B GLU 36 12 1_555 A LEU 65 B LEU 65 12 1_555 A ALA 67 B ALA 67 12 1_555 A HIS 70 B HIS 70 12 1_555 A TYR 151 B TYR 151 12 1_555 A GLN 155 B GLN 155 12 1_555 A ASP 158 B ASP 158 12 1_555 A GLN 173 B GLN 173 12 1_555 A HOH 599 I HOH 12 1_555 A HOH 705 I HOH 12 1_555 152 P 31 2 1