0.019847
0.000000
0.000000
0.000000
0.019847
0.000000
0.000000
0.000000
0.006296
0.00000
0.00000
0.00000
Fujikawa, N.
Kurumizaka, H.
Nureki, O.
Terada, T.
Shirouzu, M.
Katayama, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90
90
90
50.385
50.385
158.830
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
SE
N
401
N
C
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
N
441
N
C
N
442
N
C
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
N
N
454
S
C
N
455
N
C
N
456
N
O
N
457
N
C
N
458
N
O
N
459
N
O
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
N
N
468
S
C
N
469
N
C
N
470
N
O
N
471
R
C
N
472
N
O
N
473
N
C
N
474
N
O
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
N
N
485
S
C
N
486
N
C
N
487
N
O
N
488
N
C
Y
489
N
C
Y
490
N
C
Y
491
N
C
Y
492
N
C
Y
493
N
C
Y
494
N
C
N
495
N
O
N
496
N
O
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
N
N
509
S
C
N
510
N
C
N
511
N
O
N
512
N
C
N
513
N
C
N
514
N
C
N
515
N
O
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
Y
416
N
doub
Y
417
N
sing
Y
418
N
sing
N
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
doub
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
doub
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
doub
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
doub
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
Y
485
N
doub
Y
486
N
sing
Y
487
N
sing
N
488
N
sing
Y
489
N
doub
N
490
N
sing
Y
491
N
doub
N
492
N
sing
Y
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
doub
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
UK
NUCLEIC ACIDS RES.
NARHAD
0389
0305-1048
31
2077
2086
10.1093/nar/gkg309
12682358
Structural basis of replication origin recognition by the DnaA protein
2003
10.2210/pdb1j1v/pdb
pdb_00001j1v
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2002-10-26
MARRESEARCH
MAD
M
x-ray
1
0.9792
1.0
0.9795
1.0
0.9840
1.0
0.9736
1.0
BL41XU
SPring-8
0.9792, 0.9795, 0.9840, 0.9736
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
3966.597
5'-D(*TP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*GP*G)-3'
1
syn
polymer
3975.611
5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'
1
syn
polymer
10834.071
Chromosomal replication initiator protein dnaA
DNA binding domain, DnaA domainIV
1
man
polymer
18.015
water
143
nat
water
DnaAbox DNA
DnaAbox DNA
no
no
(DT)(DG)(DT)(DT)(DA)(DT)(DC)(DC)(DA)(DC)(DA)(DG)(DG)
TGTTATCCACAGG
B
polydeoxyribonucleotide
no
no
(DC)(DC)(DT)(DG)(DT)(DG)(DG)(DA)(DT)(DA)(DA)(DC)(DA)
CCTGTGGATAACA
C
polydeoxyribonucleotide
no
yes
VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ(MSE)A(MSE)ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIE
QLREESHDIKEDFSNLIRTLSS
VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHD
IKEDFSNLIRTLSS
A
trt001000145.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
sample
cell-free protein synthesis system
DnaA
562
Escherichia coli
plasmid
pET15b
1
2.53
51.04
VAPOR DIFFUSION, HANGING DROP
8.4
Tris-HCl, magnesium formate, polyethylene glycol 8000, pH 8.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
Tris-HCl
1
magnesium formate
1
polyethylene glycol 8000
1
Tris-HCl
2
magnesium formate
2
polyethylene glycol 8000
2
-6.008
1
20
B
101
C
213
0.071
B_DT101:DA213_C
1
-11.222
0.124
0.003
-0.105
-0.869
1
19
B
102
C
212
4.350
B_DG102:DC212_C
2
-18.203
-0.367
-0.221
-0.078
-11.481
1
20
B
103
C
211
8.141
B_DT103:DA211_C
3
-17.777
-0.175
0.260
-0.159
-5.921
1
20
B
104
C
210
6.496
B_DT104:DA210_C
4
-12.489
0.106
0.030
-0.148
-10.089
1
20
B
105
C
209
2.259
B_DA105:DT209_C
5
-11.496
-0.135
-0.278
-0.018
-6.296
1
20
B
106
C
208
6.944
B_DT106:DA208_C
6
-7.887
-0.148
-0.062
-0.031
1.270
1
19
B
107
C
207
-0.353
B_DC107:DG207_C
7
-3.734
0.118
-0.135
-0.108
-0.416
1
19
B
108
C
206
1.119
B_DC108:DG206_C
8
-2.260
0.004
-0.023
-0.078
3.241
1
20
B
109
C
205
-2.696
B_DA109:DT205_C
9
-4.871
0.142
-0.112
-0.049
6.409
1
19
B
110
C
204
4.302
B_DC110:DG204_C
10
-2.684
0.442
-0.377
-0.353
2.977
1
20
B
111
C
203
0.568
B_DA111:DT203_C
11
2.834
0.257
-0.201
-0.141
14.686
1
19
B
112
C
202
-0.795
B_DG112:DC202_C
12
-4.618
-0.228
0.200
-0.187
-6.106
1
19
B
113
C
201
-0.397
B_DG113:DC201_C
13
-15.743
-0.295
-0.132
-0.215
3.285
37.856
B
B
101
102
16.398
C
C
213
212
3.370
10.508
0.417
0.118
BB_DT101DG102:DC212DA213_CC
1
0.645
-1.007
36.415
-1.219
-0.557
3.548
36.762
B
B
102
103
-8.587
C
C
212
211
3.504
-5.391
-0.231
-0.510
BB_DG102DT103:DA211DC212_CC
2
-3.196
5.091
36.242
-0.011
-0.106
3.042
36.055
B
B
103
104
3.256
C
C
211
210
3.069
2.014
-0.270
-0.166
BB_DT103DT104:DA210DA211_CC
3
1.507
-2.436
35.970
-0.534
0.635
3.055
47.648
B
B
104
105
-10.664
C
C
210
209
3.422
-8.565
-0.632
2.101
BB_DT104DA105:DT209DA210_CC
4
-3.953
4.922
46.758
3.287
0.466
3.091
27.752
B
B
105
106
2.811
C
C
209
208
3.146
1.345
0.112
-0.434
BB_DA105DT106:DA208DT209_CC
5
-3.120
6.520
27.547
-1.215
-0.952
3.073
35.741
B
B
106
107
10.665
C
C
208
207
3.168
6.511
-0.010
-0.254
BB_DT106DC107:DG207DA208_CC
6
0.770
-1.261
35.154
-1.317
0.123
3.292
30.229
B
B
107
108
8.544
C
C
207
206
3.437
4.440
-0.215
-0.770
BB_DC107DC108:DG206DG207_CC
7
-0.167
0.321
29.908
-2.407
0.377
3.179
35.620
B
B
108
109
10.349
C
C
206
205
3.237
6.299
-0.178
-0.051
BB_DC108DA109:DT205DG206_CC
8
0.352
-0.579
35.075
-0.989
0.341
3.122
32.099
B
B
109
110
8.368
C
C
205
204
3.216
4.609
1.102
-0.825
BB_DA109DC110:DG204DT205_CC
9
1.702
-3.090
31.730
-2.298
-1.695
3.135
29.705
B
B
110
111
15.317
C
C
204
203
3.464
7.765
-0.265
-0.837
BB_DC110DA111:DT203DG204_CC
10
-0.096
0.190
28.694
-3.309
0.495
3.315
32.493
B
B
111
112
4.856
C
C
203
202
3.260
2.710
-0.383
0.555
BB_DA111DG112:DC202DT203_CC
11
-2.973
5.326
32.250
0.514
0.160
3.509
41.493
B
B
112
113
11.864
C
C
202
201
3.708
8.350
-0.521
-0.769
BB_DG112DG113:DC201DC202_CC
12
-1.830
2.600
40.641
-2.077
0.518
RIKEN Structural Genomics/Proteomics Initiative
RSGI
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-04-22
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
Y
PDBJ
Y
PDBJ
2002-12-18
REL
REL
HOH
water
TIP
1
4
HOH
HOH
114
B
TIP
4
4
HOH
HOH
115
B
TIP
8
4
HOH
HOH
116
B
TIP
18
4
HOH
HOH
117
B
TIP
19
4
HOH
HOH
118
B
TIP
21
4
HOH
HOH
119
B
TIP
23
4
HOH
HOH
120
B
TIP
28
4
HOH
HOH
121
B
TIP
35
4
HOH
HOH
122
B
TIP
37
4
HOH
HOH
123
B
TIP
42
4
HOH
HOH
124
B
TIP
44
4
HOH
HOH
125
B
TIP
46
4
HOH
HOH
126
B
TIP
49
4
HOH
HOH
127
B
TIP
51
4
HOH
HOH
128
B
TIP
52
4
HOH
HOH
129
B
TIP
53
4
HOH
HOH
130
B
TIP
57
4
HOH
HOH
131
B
TIP
59
4
HOH
HOH
132
B
TIP
63
4
HOH
HOH
133
B
TIP
65
4
HOH
HOH
134
B
TIP
66
4
HOH
HOH
135
B
TIP
72
4
HOH
HOH
136
B
TIP
74
4
HOH
HOH
137
B
TIP
75
4
HOH
HOH
138
B
TIP
76
4
HOH
HOH
139
B
TIP
77
4
HOH
HOH
140
B
TIP
80
4
HOH
HOH
141
B
TIP
85
4
HOH
HOH
142
B
TIP
91
4
HOH
HOH
143
B
TIP
93
4
HOH
HOH
144
B
TIP
95
4
HOH
HOH
145
B
TIP
96
4
HOH
HOH
146
B
TIP
99
4
HOH
HOH
147
B
TIP
112
4
HOH
HOH
148
B
TIP
118
4
HOH
HOH
149
B
TIP
119
4
HOH
HOH
150
B
TIP
120
4
HOH
HOH
151
B
TIP
127
4
HOH
HOH
152
B
TIP
135
4
HOH
HOH
153
B
TIP
137
4
HOH
HOH
154
B
TIP
139
4
HOH
HOH
155
B
TIP
140
4
HOH
HOH
156
B
TIP
5
4
HOH
HOH
5
C
TIP
7
4
HOH
HOH
7
C
TIP
13
4
HOH
HOH
13
C
TIP
14
4
HOH
HOH
14
C
TIP
20
4
HOH
HOH
20
C
TIP
27
4
HOH
HOH
27
C
TIP
30
4
HOH
HOH
30
C
TIP
33
4
HOH
HOH
33
C
TIP
34
4
HOH
HOH
34
C
TIP
38
4
HOH
HOH
38
C
TIP
43
4
HOH
HOH
43
C
TIP
45
4
HOH
HOH
45
C
TIP
50
4
HOH
HOH
50
C
TIP
56
4
HOH
HOH
56
C
TIP
58
4
HOH
HOH
58
C
TIP
60
4
HOH
HOH
60
C
TIP
61
4
HOH
HOH
61
C
TIP
62
4
HOH
HOH
62
C
TIP
64
4
HOH
HOH
64
C
TIP
68
4
HOH
HOH
68
C
TIP
69
4
HOH
HOH
69
C
TIP
70
4
HOH
HOH
70
C
TIP
78
4
HOH
HOH
78
C
TIP
81
4
HOH
HOH
81
C
TIP
82
4
HOH
HOH
82
C
TIP
86
4
HOH
HOH
86
C
TIP
88
4
HOH
HOH
88
C
TIP
97
4
HOH
HOH
97
C
TIP
100
4
HOH
HOH
100
C
TIP
101
4
HOH
HOH
101
C
TIP
102
4
HOH
HOH
102
C
TIP
110
4
HOH
HOH
110
C
TIP
113
4
HOH
HOH
113
C
TIP
114
4
HOH
HOH
114
C
TIP
121
4
HOH
HOH
121
C
TIP
123
4
HOH
HOH
123
C
TIP
131
4
HOH
HOH
131
C
TIP
134
4
HOH
HOH
134
C
TIP
138
4
HOH
HOH
138
C
TIP
2
4
HOH
HOH
2
A
TIP
3
4
HOH
HOH
3
A
TIP
6
4
HOH
HOH
6
A
TIP
9
4
HOH
HOH
9
A
TIP
10
4
HOH
HOH
10
A
TIP
11
4
HOH
HOH
11
A
TIP
12
4
HOH
HOH
12
A
TIP
15
4
HOH
HOH
15
A
TIP
16
4
HOH
HOH
16
A
TIP
17
4
HOH
HOH
17
A
TIP
22
4
HOH
HOH
22
A
TIP
24
4
HOH
HOH
24
A
TIP
25
4
HOH
HOH
25
A
TIP
26
4
HOH
HOH
26
A
TIP
29
4
HOH
HOH
29
A
TIP
31
4
HOH
HOH
31
A
TIP
32
4
HOH
HOH
32
A
TIP
36
4
HOH
HOH
36
A
TIP
39
4
HOH
HOH
39
A
TIP
40
4
HOH
HOH
40
A
TIP
41
4
HOH
HOH
41
A
TIP
47
4
HOH
HOH
47
A
TIP
48
4
HOH
HOH
48
A
TIP
54
4
HOH
HOH
54
A
TIP
55
4
HOH
HOH
55
A
TIP
67
4
HOH
HOH
67
A
TIP
71
4
HOH
HOH
71
A
TIP
73
4
HOH
HOH
73
A
TIP
79
4
HOH
HOH
79
A
TIP
83
4
HOH
HOH
83
A
TIP
84
4
HOH
HOH
84
A
TIP
87
4
HOH
HOH
87
A
TIP
89
4
HOH
HOH
89
A
TIP
90
4
HOH
HOH
90
A
TIP
92
4
HOH
HOH
92
A
TIP
94
4
HOH
HOH
94
A
TIP
98
4
HOH
HOH
98
A
TIP
103
4
HOH
HOH
103
A
TIP
104
4
HOH
HOH
104
A
TIP
105
4
HOH
HOH
105
A
TIP
106
4
HOH
HOH
106
A
TIP
107
4
HOH
HOH
107
A
TIP
108
4
HOH
HOH
108
A
TIP
109
4
HOH
HOH
109
A
TIP
111
4
HOH
HOH
111
A
TIP
115
4
HOH
HOH
115
A
TIP
116
4
HOH
HOH
116
A
TIP
117
4
HOH
HOH
117
A
TIP
122
4
HOH
HOH
122
A
TIP
124
4
HOH
HOH
124
A
TIP
125
4
HOH
HOH
125
A
TIP
126
4
HOH
HOH
126
A
TIP
128
4
HOH
HOH
128
A
TIP
129
4
HOH
HOH
129
A
TIP
130
4
HOH
HOH
130
A
TIP
132
4
HOH
HOH
132
A
TIP
133
4
HOH
HOH
133
A
TIP
136
4
HOH
HOH
136
A
TIP
141
4
HOH
HOH
141
A
TIP
142
4
HOH
HOH
142
A
TIP
143
4
HOH
HOH
143
A
THY
101
n
1
DT
101
B
GUA
102
n
2
DG
102
B
THY
103
n
3
DT
103
B
THY
104
n
4
DT
104
B
ADE
105
n
5
DA
105
B
THY
106
n
6
DT
106
B
CYT
107
n
7
DC
107
B
CYT
108
n
8
DC
108
B
ADE
109
n
9
DA
109
B
CYT
110
n
10
DC
110
B
ADE
111
n
11
DA
111
B
GUA
112
n
12
DG
112
B
GUA
113
n
13
DG
113
B
CYT
201
n
1
DC
201
C
CYT
202
n
2
DC
202
C
THY
203
n
3
DT
203
C
GUA
204
n
4
DG
204
C
THY
205
n
5
DT
205
C
GUA
206
n
6
DG
206
C
GUA
207
n
7
DG
207
C
ADE
208
n
8
DA
208
C
THY
209
n
9
DT
209
C
ADE
210
n
10
DA
210
C
ADE
211
n
11
DA
211
C
CYT
212
n
12
DC
212
C
ADE
213
n
13
DA
213
C
VAL
374
n
1
VAL
374
A
THR
375
n
2
THR
375
A
ILE
376
n
3
ILE
376
A
ASP
377
n
4
ASP
377
A
ASN
378
n
5
ASN
378
A
ILE
379
n
6
ILE
379
A
GLN
380
n
7
GLN
380
A
LYS
381
n
8
LYS
381
A
THR
382
n
9
THR
382
A
VAL
383
n
10
VAL
383
A
ALA
384
n
11
ALA
384
A
GLU
385
n
12
GLU
385
A
TYR
386
n
13
TYR
386
A
TYR
387
n
14
TYR
387
A
LYS
388
n
15
LYS
388
A
ILE
389
n
16
ILE
389
A
LYS
390
n
17
LYS
390
A
VAL
391
n
18
VAL
391
A
ALA
392
n
19
ALA
392
A
ASP
393
n
20
ASP
393
A
LEU
394
n
21
LEU
394
A
LEU
395
n
22
LEU
395
A
SER
396
n
23
SER
396
A
LYS
397
n
24
LYS
397
A
ARG
398
n
25
ARG
398
A
ARG
399
n
26
ARG
399
A
SER
400
n
27
SER
400
A
ARG
401
n
28
ARG
401
A
SER
402
n
29
SER
402
A
VAL
403
n
30
VAL
403
A
ALA
404
n
31
ALA
404
A
ARG
405
n
32
ARG
405
A
PRO
406
n
33
PRO
406
A
ARG
407
n
34
ARG
407
A
GLN
408
n
35
GLN
408
A
MSE
409
n
36
MSE
409
A
ALA
410
n
37
ALA
410
A
MSE
411
n
38
MSE
411
A
ALA
412
n
39
ALA
412
A
LEU
413
n
40
LEU
413
A
ALA
414
n
41
ALA
414
A
LYS
415
n
42
LYS
415
A
GLU
416
n
43
GLU
416
A
LEU
417
n
44
LEU
417
A
THR
418
n
45
THR
418
A
ASN
419
n
46
ASN
419
A
HIS
420
n
47
HIS
420
A
SER
421
n
48
SER
421
A
LEU
422
n
49
LEU
422
A
PRO
423
n
50
PRO
423
A
GLU
424
n
51
GLU
424
A
ILE
425
n
52
ILE
425
A
GLY
426
n
53
GLY
426
A
ASP
427
n
54
ASP
427
A
ALA
428
n
55
ALA
428
A
PHE
429
n
56
PHE
429
A
GLY
430
n
57
GLY
430
A
GLY
431
n
58
GLY
431
A
ARG
432
n
59
ARG
432
A
ASP
433
n
60
ASP
433
A
HIS
434
n
61
HIS
434
A
THR
435
n
62
THR
435
A
THR
436
n
63
THR
436
A
VAL
437
n
64
VAL
437
A
LEU
438
n
65
LEU
438
A
HIS
439
n
66
HIS
439
A
ALA
440
n
67
ALA
440
A
CYS
441
n
68
CYS
441
A
ARG
442
n
69
ARG
442
A
LYS
443
n
70
LYS
443
A
ILE
444
n
71
ILE
444
A
GLU
445
n
72
GLU
445
A
GLN
446
n
73
GLN
446
A
LEU
447
n
74
LEU
447
A
ARG
448
n
75
ARG
448
A
GLU
449
n
76
GLU
449
A
GLU
450
n
77
GLU
450
A
SER
451
n
78
SER
451
A
HIS
452
n
79
HIS
452
A
ASP
453
n
80
ASP
453
A
ILE
454
n
81
ILE
454
A
LYS
455
n
82
LYS
455
A
GLU
456
n
83
GLU
456
A
ASP
457
n
84
ASP
457
A
PHE
458
n
85
PHE
458
A
SER
459
n
86
SER
459
A
ASN
460
n
87
ASN
460
A
LEU
461
n
88
LEU
461
A
ILE
462
n
89
ILE
462
A
ARG
463
n
90
ARG
463
A
THR
464
n
91
THR
464
A
LEU
465
n
92
LEU
465
A
SER
466
n
93
SER
466
A
SER
467
n
94
SER
467
A
author_defined_assembly
3
trimeric
A
MSE
409
SELENOMETHIONINE
C
MSE
36
MET
A
MSE
411
SELENOMETHIONINE
C
MSE
38
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
CA
CB
HIS
HIS
434
434
-0.249
0.022
1.535
1.286
N
1
A
PHE
429
-118.86
62.87
0.2489
0.2292
0.2292
0.2292
2.1
50
1303
12685
12599
RANDOM
1
0
MAD
Engh & Huber
0.29
0.27
5
0.19
0.18
2.1
50
143
1422
0
527
752
1.15348
0.009139
17.40347
1.23851
0.2493
0.2466
2.18
6
0.2463
0.235
2.26
6
0.2789
0.2482
2.37
6
0.2754
0.2566
2.49
6
0.2651
0.2425
2.65
6
0.2597
0.2496
2.85
6
2.1
50
1J1V
12618
0
0
1
99.3
2.1
2.18
87.6
data reduction
DENZO
data scaling
SCALEPACK
phasing
SHARP
refinement
CNS
1.0
Crystal structure of DnaA domainIV complexed with DnaAbox DNA
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
A
THR
375
C
THR
2
HELX_P
A
TYR
387
C
TYR
14
1
1
13
A
LYS
390
C
LYS
17
HELX_P
A
SER
396
C
SER
23
1
2
7
A
SER
400
C
SER
27
HELX_P
A
THR
418
C
THR
45
1
3
19
A
SER
421
C
SER
48
HELX_P
A
PHE
429
C
PHE
56
1
4
9
A
ASP
433
C
ASP
60
HELX_P
A
SER
451
C
SER
78
1
5
19
A
SER
451
C
SER
78
HELX_P
A
SER
466
C
SER
93
1
6
16
covale
1.333
both
A
GLN
408
C
C
GLN
35
1_555
A
MSE
409
C
N
MSE
36
1_555
covale
1.326
both
A
MSE
409
C
C
MSE
36
1_555
A
ALA
410
C
N
ALA
37
1_555
covale
1.331
both
A
ALA
410
C
C
ALA
37
1_555
A
MSE
411
C
N
MSE
38
1_555
covale
1.328
both
A
MSE
411
C
C
MSE
38
1_555
A
ALA
412
C
N
ALA
39
1_555
hydrog
WATSON-CRICK
B
DT
101
A
N3
DT
1
1_555
C
DA
213
B
N1
DA
13
1_555
hydrog
WATSON-CRICK
B
DT
101
A
O4
DT
1
1_555
C
DA
213
B
N6
DA
13
1_555
hydrog
WATSON-CRICK
B
DG
102
A
N1
DG
2
1_555
C
DC
212
B
N3
DC
12
1_555
hydrog
WATSON-CRICK
B
DG
102
A
N2
DG
2
1_555
C
DC
212
B
O2
DC
12
1_555
hydrog
WATSON-CRICK
B
DG
102
A
O6
DG
2
1_555
C
DC
212
B
N4
DC
12
1_555
hydrog
WATSON-CRICK
B
DT
103
A
N3
DT
3
1_555
C
DA
211
B
N1
DA
11
1_555
hydrog
WATSON-CRICK
B
DT
103
A
O4
DT
3
1_555
C
DA
211
B
N6
DA
11
1_555
hydrog
WATSON-CRICK
B
DT
104
A
N3
DT
4
1_555
C
DA
210
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
B
DT
104
A
O4
DT
4
1_555
C
DA
210
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
B
DA
105
A
N1
DA
5
1_555
C
DT
209
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
B
DA
105
A
N6
DA
5
1_555
C
DT
209
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
B
DT
106
A
N3
DT
6
1_555
C
DA
208
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
B
DT
106
A
O4
DT
6
1_555
C
DA
208
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
B
DC
107
A
N3
DC
7
1_555
C
DG
207
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
B
DC
107
A
N4
DC
7
1_555
C
DG
207
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
B
DC
107
A
O2
DC
7
1_555
C
DG
207
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
B
DC
108
A
N3
DC
8
1_555
C
DG
206
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
B
DC
108
A
N4
DC
8
1_555
C
DG
206
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
B
DC
108
A
O2
DC
8
1_555
C
DG
206
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
B
DA
109
A
N1
DA
9
1_555
C
DT
205
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
B
DA
109
A
N6
DA
9
1_555
C
DT
205
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
B
DC
110
A
N3
DC
10
1_555
C
DG
204
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
110
A
N4
DC
10
1_555
C
DG
204
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
110
A
O2
DC
10
1_555
C
DG
204
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
B
DA
111
A
N1
DA
11
1_555
C
DT
203
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
B
DA
111
A
N6
DA
11
1_555
C
DT
203
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
B
DG
112
A
N1
DG
12
1_555
C
DC
202
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
112
A
N2
DG
12
1_555
C
DC
202
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
112
A
O6
DG
12
1_555
C
DC
202
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
113
A
N1
DG
13
1_555
C
DC
201
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
B
DG
113
A
N2
DG
13
1_555
C
DC
201
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
B
DG
113
A
O6
DG
13
1_555
C
DC
201
B
N4
DC
1
1_555
replication/DNA
Protein-DNA complex, Replication, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, replication-DNA COMPLEX
DNAA_ECOLI
UNP
3
374
P03004
VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHD
IKEDFSNLIRTLSS
1J1V
PDB
1
1J1V
1J1V
PDB
2
1J1V
374
467
1J1V
374
467
P03004
A
1
1
94
101
113
1J1V
101
113
1J1V
B
2
1
13
201
213
1J1V
201
213
1J1V
C
3
1
13
1
MET
modified residue
MSE
409
1J1V
A
P03004
UNP
409
36
1
MET
modified residue
MSE
411
1J1V
A
P03004
UNP
411
38
92
P 41 21 2