0.014328 0.008272 0.000000 0.000000 0.016544 0.000000 0.000000 0.000000 0.017091 0.00000 0.00000 0.00000 Nishino, T. Komori, K. Ishino, Y. Morikawa, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 69.795 69.795 58.509 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 S C N 77 N C N 78 N O N 79 N C N 80 N C N 81 N C N 82 N O N 83 N N N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N C N 102 N O N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N N N 115 N C N 116 N C N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N N N 125 S C N 126 N C N 127 N O N 128 N C Y 129 N C Y 130 N N Y 131 N C Y 132 N C Y 133 N N N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 S C N 153 N C N 154 N C N 155 N C N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C N 175 N C N 176 N C N 177 N C N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 N C N 197 N C N 198 N C N 199 N C N 200 N N N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N S N 224 N C N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C Y 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C N 265 N C N 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N O N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 R C N 296 N O N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C Y 318 N C N 319 N O N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N N N 333 S C N 334 N C N 335 N O N 336 N C N 337 N C N 338 N C N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub N 309 N sing Y 310 N doub N 311 N sing Y 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing UK Structure STRUE6 2005 0969-2126 11 445 457 10.1016/S0969-2126(03)00046-7 12679022 X-Ray and Biochemical Anatomy of an Archaeal XPF/Rad1/Mus81 Family Nuclease. Similarity between Its Endonuclease Domain and Restriction Enzymes 2003 10.2210/pdb1j24/pdb pdb_00001j24 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 diamond-graphite CCD 2001-11-01 ADSC QUANTUM 4 diamond SINGLE WAVELENGTH M x-ray 1 1.0 1.0 BL38B1 SPring-8 1.0 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 16116.660 ATP-dependent RNA helicase, putative nuclease domain fragment F55L, R63G 1 man polymer 40.078 CALCIUM ION 1 syn non-polymer 18.015 water 94 nat water Hef nuclease no no MQEGVKVVVDSRELRSEVVKRLKLLGVKLEVKTLDVGDYIISEDVAIERKSANDLIQSIIDGGLFDQVKRLKEAYSRPIM IVEGSLYGIRNVHPNAIRGAIAAVTVDFGVPIIFSSTPEETAQYIFLIAKREQEEREKPVRIR MQEGVKVVVDSRELRSEVVKRLKLLGVKLEVKTLDVGDYIISEDVAIERKSANDLIQSIIDGGLFDQVKRLKEAYSRPIM IVEGSLYGIRNVHPNAIRGAIAAVTVDFGVPIIFSSTPEETAQYIFLIAKREQEEREKPVRIR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pyrococcus Pyrococcus furiosus DSM 3638 Escherichia sample 186497 Pyrococcus furiosus 562 Escherichia coli BL21DE3 codon plus RIL plasmid pET 1 2.58 51.95 MICRODIALYSIS 8.0 Tricine-NaOH, NaCl, NaN3, subtilisin, CaCl2 , pH 8.0, MICRODIALYSIS, temperature 298K 298 database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Source and taxonomy Version format compliance Database references Derived calculations Data collection Refinement description 1 0 2003-04-22 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-11-10 1 4 2023-12-27 1 5 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id XPF/Mus81 homolog, selenomet derivative XPF/Mus81 homolog XPF/Mus81 homolog, Mn cocrystal PDBJ Y PDBJ 2002-12-25 REL REL CA CALCIUM ION HOH water selenomet-phased model Other experimental model CA2 1 2 CA CA 1001 A WAT 2 3 HOH HOH 1002 A WAT 3 3 HOH HOH 1003 A WAT 4 3 HOH HOH 1004 A WAT 5 3 HOH HOH 1005 A WAT 6 3 HOH HOH 1006 A WAT 7 3 HOH HOH 1007 A WAT 8 3 HOH HOH 1008 A WAT 9 3 HOH HOH 1009 A WAT 10 3 HOH HOH 1010 A WAT 11 3 HOH HOH 1011 A WAT 12 3 HOH HOH 1012 A WAT 13 3 HOH HOH 1013 A WAT 14 3 HOH HOH 1014 A WAT 15 3 HOH HOH 1015 A WAT 16 3 HOH HOH 1016 A WAT 17 3 HOH HOH 1017 A WAT 18 3 HOH HOH 1018 A WAT 19 3 HOH HOH 1019 A WAT 20 3 HOH HOH 1020 A WAT 21 3 HOH HOH 1021 A WAT 22 3 HOH HOH 1022 A WAT 23 3 HOH HOH 1023 A WAT 24 3 HOH HOH 1024 A WAT 25 3 HOH HOH 1025 A WAT 26 3 HOH HOH 1026 A WAT 27 3 HOH HOH 1027 A WAT 28 3 HOH HOH 1028 A WAT 29 3 HOH HOH 1029 A WAT 30 3 HOH HOH 1030 A WAT 31 3 HOH HOH 1031 A WAT 32 3 HOH HOH 1032 A WAT 33 3 HOH HOH 1033 A WAT 34 3 HOH HOH 1034 A WAT 35 3 HOH HOH 1035 A WAT 36 3 HOH HOH 1036 A WAT 37 3 HOH HOH 1037 A WAT 38 3 HOH HOH 1038 A WAT 39 3 HOH HOH 1039 A WAT 40 3 HOH HOH 1040 A WAT 41 3 HOH HOH 1041 A WAT 42 3 HOH HOH 1042 A WAT 43 3 HOH HOH 1043 A WAT 44 3 HOH HOH 1044 A WAT 45 3 HOH HOH 1045 A WAT 46 3 HOH HOH 1046 A WAT 47 3 HOH HOH 1047 A WAT 48 3 HOH HOH 1048 A WAT 49 3 HOH HOH 1049 A WAT 50 3 HOH HOH 1050 A WAT 51 3 HOH HOH 1051 A WAT 52 3 HOH HOH 1052 A WAT 53 3 HOH HOH 1053 A WAT 54 3 HOH HOH 1054 A WAT 55 3 HOH HOH 1055 A WAT 56 3 HOH HOH 1056 A WAT 57 3 HOH HOH 1057 A WAT 58 3 HOH HOH 1058 A WAT 59 3 HOH HOH 1059 A WAT 60 3 HOH HOH 1060 A WAT 61 3 HOH HOH 1061 A WAT 62 3 HOH HOH 1062 A WAT 63 3 HOH HOH 1063 A WAT 64 3 HOH HOH 1064 A WAT 65 3 HOH HOH 1065 A WAT 66 3 HOH HOH 1066 A WAT 67 3 HOH HOH 1067 A WAT 68 3 HOH HOH 1068 A WAT 69 3 HOH HOH 1069 A WAT 70 3 HOH HOH 1070 A WAT 71 3 HOH HOH 1071 A WAT 72 3 HOH HOH 1072 A WAT 73 3 HOH HOH 1073 A WAT 74 3 HOH HOH 1074 A WAT 75 3 HOH HOH 1075 A WAT 76 3 HOH HOH 1076 A WAT 77 3 HOH HOH 1077 A WAT 78 3 HOH HOH 1078 A WAT 79 3 HOH HOH 1079 A WAT 80 3 HOH HOH 1080 A WAT 81 3 HOH HOH 1081 A WAT 82 3 HOH HOH 1082 A WAT 83 3 HOH HOH 1083 A WAT 84 3 HOH HOH 1084 A WAT 85 3 HOH HOH 1085 A WAT 86 3 HOH HOH 1086 A WAT 87 3 HOH HOH 1087 A WAT 88 3 HOH HOH 1088 A WAT 89 3 HOH HOH 1089 A WAT 90 3 HOH HOH 1090 A WAT 91 3 HOH HOH 1091 A WAT 92 3 HOH HOH 1092 A WAT 93 3 HOH HOH 1093 A WAT 94 3 HOH HOH 1094 A WAT 95 3 HOH HOH 1095 A n 1 1 A n 2 2 A n 3 3 A GLY 4 n 4 GLY 4 A VAL 5 n 5 VAL 5 A LYS 6 n 6 LYS 6 A VAL 7 n 7 VAL 7 A VAL 8 n 8 VAL 8 A VAL 9 n 9 VAL 9 A ASP 10 n 10 ASP 10 A SER 11 n 11 SER 11 A ARG 12 n 12 ARG 12 A GLU 13 n 13 GLU 13 A LEU 14 n 14 LEU 14 A ARG 15 n 15 ARG 15 A SER 16 n 16 SER 16 A GLU 17 n 17 GLU 17 A VAL 18 n 18 VAL 18 A VAL 19 n 19 VAL 19 A LYS 20 n 20 LYS 20 A ARG 21 n 21 ARG 21 A LEU 22 n 22 LEU 22 A LYS 23 n 23 LYS 23 A LEU 24 n 24 LEU 24 A LEU 25 n 25 LEU 25 A GLY 26 n 26 GLY 26 A VAL 27 n 27 VAL 27 A LYS 28 n 28 LYS 28 A LEU 29 n 29 LEU 29 A GLU 30 n 30 GLU 30 A VAL 31 n 31 VAL 31 A LYS 32 n 32 LYS 32 A THR 33 n 33 THR 33 A LEU 34 n 34 LEU 34 A ASP 35 n 35 ASP 35 A VAL 36 n 36 VAL 36 A GLY 37 n 37 GLY 37 A ASP 38 n 38 ASP 38 A TYR 39 n 39 TYR 39 A ILE 40 n 40 ILE 40 A ILE 41 n 41 ILE 41 A SER 42 n 42 SER 42 A GLU 43 n 43 GLU 43 A ASP 44 n 44 ASP 44 A VAL 45 n 45 VAL 45 A ALA 46 n 46 ALA 46 A ILE 47 n 47 ILE 47 A GLU 48 n 48 GLU 48 A ARG 49 n 49 ARG 49 A LYS 50 n 50 LYS 50 A SER 51 n 51 SER 51 A ALA 52 n 52 ALA 52 A ASN 53 n 53 ASN 53 A ASP 54 n 54 ASP 54 A LEU 55 n 55 LEU 55 A ILE 56 n 56 ILE 56 A GLN 57 n 57 GLN 57 A SER 58 n 58 SER 58 A ILE 59 n 59 ILE 59 A ILE 60 n 60 ILE 60 A ASP 61 n 61 ASP 61 A GLY 62 n 62 GLY 62 A GLY 63 n 63 GLY 63 A LEU 64 n 64 LEU 64 A PHE 65 n 65 PHE 65 A ASP 66 n 66 ASP 66 A GLN 67 n 67 GLN 67 A VAL 68 n 68 VAL 68 A LYS 69 n 69 LYS 69 A ARG 70 n 70 ARG 70 A LEU 71 n 71 LEU 71 A LYS 72 n 72 LYS 72 A GLU 73 n 73 GLU 73 A ALA 74 n 74 ALA 74 A TYR 75 n 75 TYR 75 A SER 76 n 76 SER 76 A ARG 77 n 77 ARG 77 A PRO 78 n 78 PRO 78 A ILE 79 n 79 ILE 79 A MET 80 n 80 MET 80 A ILE 81 n 81 ILE 81 A VAL 82 n 82 VAL 82 A GLU 83 n 83 GLU 83 A GLY 84 n 84 GLY 84 A SER 85 n 85 SER 85 A LEU 86 n 86 LEU 86 A TYR 87 n 87 TYR 87 A GLY 88 n 88 GLY 88 A ILE 89 n 89 ILE 89 A ARG 90 n 90 ARG 90 A ASN 91 n 91 ASN 91 A VAL 92 n 92 VAL 92 A HIS 93 n 93 HIS 93 A PRO 94 n 94 PRO 94 A ASN 95 n 95 ASN 95 A ALA 96 n 96 ALA 96 A ILE 97 n 97 ILE 97 A ARG 98 n 98 ARG 98 A GLY 99 n 99 GLY 99 A ALA 100 n 100 ALA 100 A ILE 101 n 101 ILE 101 A ALA 102 n 102 ALA 102 A ALA 103 n 103 ALA 103 A VAL 104 n 104 VAL 104 A THR 105 n 105 THR 105 A VAL 106 n 106 VAL 106 A ASP 107 n 107 ASP 107 A PHE 108 n 108 PHE 108 A GLY 109 n 109 GLY 109 A VAL 110 n 110 VAL 110 A PRO 111 n 111 PRO 111 A ILE 112 n 112 ILE 112 A ILE 113 n 113 ILE 113 A PHE 114 n 114 PHE 114 A SER 115 n 115 SER 115 A SER 116 n 116 SER 116 A THR 117 n 117 THR 117 A PRO 118 n 118 PRO 118 A GLU 119 n 119 GLU 119 A GLU 120 n 120 GLU 120 A THR 121 n 121 THR 121 A ALA 122 n 122 ALA 122 A GLN 123 n 123 GLN 123 A TYR 124 n 124 TYR 124 A ILE 125 n 125 ILE 125 A PHE 126 n 126 PHE 126 A LEU 127 n 127 LEU 127 A ILE 128 n 128 ILE 128 A ALA 129 n 129 ALA 129 A LYS 130 n 130 LYS 130 A ARG 131 n 131 ARG 131 A GLU 132 n 132 GLU 132 A GLN 133 n 133 GLN 133 A GLU 134 n 134 GLU 134 A GLU 135 n 135 GLU 135 A ARG 136 n 136 ARG 136 A n 137 137 A n 138 138 A n 139 139 A n 140 140 A n 141 141 A n 142 142 A n 143 143 A author_defined_assembly 2 dimeric A ASP 38 A OD1 ASP 38 1_555 A CA 1001 B CA CA 1_555 A ASP 38 A OD2 ASP 38 1_555 40.5 A ASP 38 A OD1 ASP 38 1_555 A CA 1001 B CA CA 1_555 A GLU 48 A OE1 GLU 48 1_555 95.4 A ASP 38 A OD2 ASP 38 1_555 A CA 1001 B CA CA 1_555 A GLU 48 A OE1 GLU 48 1_555 84.9 A ASP 38 A OD1 ASP 38 1_555 A CA 1001 B CA CA 1_555 A ARG 49 A O ARG 49 1_555 126.9 A ASP 38 A OD2 ASP 38 1_555 A CA 1001 B CA CA 1_555 A ARG 49 A O ARG 49 1_555 89.4 A GLU 48 A OE1 GLU 48 1_555 A CA 1001 B CA CA 1_555 A ARG 49 A O ARG 49 1_555 95.9 A ASP 38 A OD1 ASP 38 1_555 A CA 1001 B CA CA 1_555 A HOH 1031 C O HOH 1_555 90.5 A ASP 38 A OD2 ASP 38 1_555 A CA 1001 B CA CA 1_555 A HOH 1031 C O HOH 1_555 92.0 A GLU 48 A OE1 GLU 48 1_555 A CA 1001 B CA CA 1_555 A HOH 1031 C O HOH 1_555 166.7 A ARG 49 A O ARG 49 1_555 A CA 1001 B CA CA 1_555 A HOH 1031 C O HOH 1_555 71.1 A ASP 38 A OD1 ASP 38 1_555 A CA 1001 B CA CA 1_555 A HOH 1062 C O HOH 1_555 148.0 A ASP 38 A OD2 ASP 38 1_555 A CA 1001 B CA CA 1_555 A HOH 1062 C O HOH 1_555 170.1 A GLU 48 A OE1 GLU 48 1_555 A CA 1001 B CA CA 1_555 A HOH 1062 C O HOH 1_555 88.6 A ARG 49 A O ARG 49 1_555 A CA 1001 B CA CA 1_555 A HOH 1062 C O HOH 1_555 83.9 A HOH 1031 C O HOH 1_555 A CA 1001 B CA CA 1_555 A HOH 1062 C O HOH 1_555 92.6 A ASP 38 A OD1 ASP 38 1_555 A CA 1001 B CA CA 1_555 A HOH 1076 C O HOH 1_555 47.7 A ASP 38 A OD2 ASP 38 1_555 A CA 1001 B CA CA 1_555 A HOH 1076 C O HOH 1_555 68.2 A GLU 48 A OE1 GLU 48 1_555 A CA 1001 B CA CA 1_555 A HOH 1076 C O HOH 1_555 55.5 A ARG 49 A O ARG 49 1_555 A CA 1001 B CA CA 1_555 A HOH 1076 C O HOH 1_555 143.7 A HOH 1031 C O HOH 1_555 A CA 1001 B CA CA 1_555 A HOH 1076 C O HOH 1_555 134.8 A HOH 1062 C O HOH 1_555 A CA 1001 B CA CA 1_555 A HOH 1076 C O HOH 1_555 113.8 A ASP 38 A OD1 ASP 38 1_555 A CA 1001 B CA CA 1_555 A HOH 1095 C O HOH 1_555 64.8 A ASP 38 A OD2 ASP 38 1_555 A CA 1001 B CA CA 1_555 A HOH 1095 C O HOH 1_555 105.3 A GLU 48 A OE1 GLU 48 1_555 A CA 1001 B CA CA 1_555 A HOH 1095 C O HOH 1_555 105.3 A ARG 49 A O ARG 49 1_555 A CA 1001 B CA CA 1_555 A HOH 1095 C O HOH 1_555 154.9 A HOH 1031 C O HOH 1_555 A CA 1001 B CA CA 1_555 A HOH 1095 C O HOH 1_555 87.9 A HOH 1062 C O HOH 1_555 A CA 1001 B CA CA 1_555 A HOH 1095 C O HOH 1_555 83.5 A HOH 1076 C O HOH 1_555 A CA 1001 B CA CA 1_555 A HOH 1095 C O HOH 1_555 61.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 5_674 x-y+1,-y+2,-z-1/3 crystal symmetry operation 0.0000000000 120.8884861143 -19.5030000000 A O GLU 30 A O GLU 30 A N VAL 9 A N VAL 9 A N VAL 8 A N VAL 8 A O ILE 40 A O ILE 40 A N TYR 39 A N TYR 39 A O ILE 47 A O ILE 47 A N GLU 48 A N GLU 48 A O ILE 79 A O ILE 79 A N VAL 82 A N VAL 82 A O SER 115 A O SER 115 1 A MET 1 A MET 1 1 Y 1 A GLN 2 A GLN 2 1 Y 1 A GLU 3 A GLU 3 1 Y 1 A GLU 137 A GLU 137 1 Y 1 A LYS 138 A LYS 138 1 Y 1 A PRO 139 A PRO 139 1 Y 1 A VAL 140 A VAL 140 1 Y 1 A ARG 141 A ARG 141 1 Y 1 A ILE 142 A ILE 142 1 Y 1 A ARG 143 A ARG 143 1 Y 1 A A O O HOH HOH 1066 1066 2.09 1_555 5_674 1 A ARG 90 -58.29 -161.45 0.246 0.215 1.78 50 1593 15872 14279 random 1 0 MAD selenomet-phased model Engh & Huber 0.25 0.22 5 0.10 0.11 1.78 50 94 1139 1 0 1044 0.005 1.083 21.20 0.725 0.327 0.265 1.80 40 396 1.78 50 1J24 16322 16139 2 2 0.052 1 20.1 98.9 0.246 1.79 1.86 1 89.1 data reduction MOSFLM data reduction TRUNCATE phasing SOLVE refinement CNS 0.9 data scaling CCP4 (TRUNCATE) Crystal structure of archaeal XPF/Mus81 homolog, Hef from Pyrococcus furiosus, nuclease domain, Ca cocrystal 1 N N 2 N N 3 N N The second part of the biological assembly is generated by the two fold axis:x-y+1,2-y,-z-1/3 A ARG 12 A ARG 12 HELX_P A LEU 14 A LEU 14 5 1 3 A SER 16 A SER 16 HELX_P A LEU 25 A LEU 25 1 2 10 A ALA 52 A ALA 52 HELX_P A ASP 61 A ASP 61 1 3 10 A GLY 63 A GLY 63 HELX_P A TYR 75 A TYR 75 1 4 13 A HIS 93 A HIS 93 HELX_P A ASP 107 A ASP 107 1 5 15 A THR 117 A THR 117 HELX_P A ARG 136 A ARG 136 1 6 20 metalc 3.364 A ASP 38 A OD1 ASP 38 1_555 A CA 1001 B CA CA 1_555 metalc 2.384 A ASP 38 A OD2 ASP 38 1_555 A CA 1001 B CA CA 1_555 metalc 2.946 A GLU 48 A OE1 GLU 48 1_555 A CA 1001 B CA CA 1_555 metalc 2.276 A ARG 49 A O ARG 49 1_555 A CA 1001 B CA CA 1_555 metalc 3.005 A CA 1001 B CA CA 1_555 A HOH 1031 C O HOH 1_555 metalc 2.350 A CA 1001 B CA CA 1_555 A HOH 1062 C O HOH 1_555 metalc 2.992 A CA 1001 B CA CA 1_555 A HOH 1076 C O HOH 1_555 metalc 2.331 A CA 1001 B CA CA 1_555 A HOH 1095 C O HOH 1_555 HYDROLASE structure-specific endonuclease, HYDROLASE Q8TZH8_PYRFU UNP 1 547 Q8TZH8 AQEGVKVVVDSRELRSEVVKRLKLLGVKLEVKTLDVGDYIISEDVAIERKSANDFIQSIIDGRLFDQVKRLKEAYSRPIM IVEGSLYGIRNVHPNAIRGAIAAVTVDFGVPIIFSSTPEETAQYIFLIAKREQEEREKPVRIR 548 689 1J24 2 143 Q8TZH8 A 1 2 143 1 initiating methionine MET 1 1J24 A Q8TZH8 UNP 1 1 PHE engineered mutation LEU 55 1J24 A Q8TZH8 UNP 601 55 1 ARG engineered mutation GLY 63 1J24 A Q8TZH8 UNP 609 63 6 parallel anti-parallel anti-parallel parallel parallel A LYS 28 A LYS 28 A LYS 32 A LYS 32 A LYS 6 A LYS 6 A ASP 10 A ASP 10 A TYR 39 A TYR 39 A ILE 40 A ILE 40 A VAL 45 A VAL 45 A SER 51 A SER 51 A ARG 77 A ARG 77 A GLU 83 A GLU 83 A ILE 112 A ILE 112 A SER 115 A SER 115 BINDING SITE FOR RESIDUE CA A 1001 A CA 1001 Software 7 A ASP 38 A ASP 38 7 1_555 A GLU 48 A GLU 48 7 1_555 A ARG 49 A ARG 49 7 1_555 A HOH 1031 C HOH 7 1_555 A HOH 1062 C HOH 7 1_555 A HOH 1076 C HOH 7 1_555 A HOH 1095 C HOH 7 1_555 152 P 31 2 1