0.010110
0.000000
0.000000
0.000000
0.010110
0.000000
0.000000
0.000000
0.010110
0.00000
0.00000
0.00000
Lee, B.I.
Kwak, J.E.
Suh, S.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
98.910
98.910
98.910
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C7 H10 O6
190.151
1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC ACID
3-DEHYDROQUINIC ACID
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
R
C
N
89
N
C
N
90
R
C
N
91
N
O
N
92
S
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
N
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
S
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
Y
165
N
C
Y
166
N
N
Y
167
N
C
Y
168
N
C
Y
169
N
N
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
S
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
N
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
S
N
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
N
301
N
C
N
302
N
C
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
N
318
N
O
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
R
C
N
332
N
O
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
N
355
N
O
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
N
373
N
C
N
374
N
C
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
Y
163
N
sing
Y
164
N
doub
Y
165
N
doub
N
166
N
sing
Y
167
N
sing
N
168
N
sing
Y
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
Y
271
N
doub
Y
272
N
sing
Y
273
N
sing
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
doub
N
278
N
sing
Y
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
Y
340
N
doub
Y
341
N
sing
Y
342
N
sing
N
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
US
Proteins
PSFGEY
0867
0887-3585
51
616
617
10.1002/prot.10415
12784220
Crystal structure of the type II 3-dehydroquinase from Helicobacter pylori
2003
10.2210/pdb1j2y/pdb
pdb_00001j2y
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.00000
1.0
BL-6A
Photon Factory
1.00000
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
18499.246
3-dehydroquinate dehydratase
4.2.1.10
1
man
polymer
190.151
1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC ACID
1
syn
non-polymer
18.015
water
19
nat
water
Type II 3-dehydroquinase
no
no
MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSDYEGIIINPGAF
SHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNSYTGAACGGVIMGFGPLGYNMALMAMVNILAEMKAFQEAQKNNPN
NPINNQK
MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSDYEGIIINPGAF
SHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNSYTGAACGGVIMGFGPLGYNMALMAMVNILAEMKAFQEAQKNNPN
NPINNQK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Helicobacter
Escherichia
sample
aroQ
210
Helicobacter pylori
562
Escherichia coli
B834(DE3)
PLASMID
pET21a
1
2.30
46.07
VAPOR DIFFUSION, HANGING DROP
5.8
PEG 4000, sodium cholride, sodium citrate, EDTA, 2-mercaptoethanol, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-06-24
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-10-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2003-01-15
REL
REL
DQA
1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC ACID
HOH
water
2DHQ
PDB ENTRY 2DHQ
PDB
experimental model
DHQ
219
2
DQA
DQA
219
A
TIP
200
3
HOH
HOH
200
A
TIP
201
3
HOH
HOH
201
A
TIP
202
3
HOH
HOH
202
A
TIP
203
3
HOH
HOH
203
A
TIP
204
3
HOH
HOH
204
A
TIP
205
3
HOH
HOH
205
A
TIP
206
3
HOH
HOH
206
A
TIP
207
3
HOH
HOH
207
A
TIP
208
3
HOH
HOH
208
A
TIP
209
3
HOH
HOH
209
A
TIP
210
3
HOH
HOH
210
A
TIP
211
3
HOH
HOH
211
A
TIP
212
3
HOH
HOH
212
A
TIP
213
3
HOH
HOH
213
A
TIP
214
3
HOH
HOH
214
A
TIP
215
3
HOH
HOH
215
A
TIP
216
3
HOH
HOH
216
A
TIP
217
3
HOH
HOH
217
A
TIP
218
3
HOH
HOH
218
A
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
ILE
3
n
3
ILE
3
A
LEU
4
n
4
LEU
4
A
VAL
5
n
5
VAL
5
A
ILE
6
n
6
ILE
6
A
GLN
7
n
7
GLN
7
A
GLY
8
n
8
GLY
8
A
PRO
9
n
9
PRO
9
A
ASN
10
n
10
ASN
10
A
LEU
11
n
11
LEU
11
A
ASN
12
n
12
ASN
12
A
MET
13
n
13
MET
13
A
LEU
14
n
14
LEU
14
A
GLY
15
n
15
GLY
15
A
HIS
16
n
16
HIS
16
A
ARG
17
n
17
ARG
17
A
ASP
18
n
18
ASP
18
A
PRO
19
n
19
PRO
19
A
ARG
20
n
20
ARG
20
A
LEU
21
n
21
LEU
21
A
TYR
22
n
22
TYR
22
A
GLY
23
n
23
GLY
23
A
MET
24
n
24
MET
24
A
VAL
25
n
25
VAL
25
A
THR
26
n
26
THR
26
A
LEU
27
n
27
LEU
27
A
ASP
28
n
28
ASP
28
A
GLN
29
n
29
GLN
29
A
ILE
30
n
30
ILE
30
A
HIS
31
n
31
HIS
31
A
GLU
32
n
32
GLU
32
A
ILE
33
n
33
ILE
33
A
MET
34
n
34
MET
34
A
GLN
35
n
35
GLN
35
A
THR
36
n
36
THR
36
A
PHE
37
n
37
PHE
37
A
VAL
38
n
38
VAL
38
A
LYS
39
n
39
LYS
39
A
GLN
40
n
40
GLN
40
A
GLY
41
n
41
GLY
41
A
ASN
42
n
42
ASN
42
A
LEU
43
n
43
LEU
43
A
ASP
44
n
44
ASP
44
A
VAL
45
n
45
VAL
45
A
GLU
46
n
46
GLU
46
A
LEU
47
n
47
LEU
47
A
GLU
48
n
48
GLU
48
A
PHE
49
n
49
PHE
49
A
PHE
50
n
50
PHE
50
A
GLN
51
n
51
GLN
51
A
THR
52
n
52
THR
52
A
ASN
53
n
53
ASN
53
A
PHE
54
n
54
PHE
54
A
GLU
55
n
55
GLU
55
A
GLY
56
n
56
GLY
56
A
GLU
57
n
57
GLU
57
A
ILE
58
n
58
ILE
58
A
ILE
59
n
59
ILE
59
A
ASP
60
n
60
ASP
60
A
LYS
61
n
61
LYS
61
A
ILE
62
n
62
ILE
62
A
GLN
63
n
63
GLN
63
A
GLU
64
n
64
GLU
64
A
SER
65
n
65
SER
65
A
VAL
66
n
66
VAL
66
A
GLY
67
n
67
GLY
67
A
SER
68
n
68
SER
68
A
ASP
69
n
69
ASP
69
A
TYR
70
n
70
TYR
70
A
GLU
71
n
71
GLU
71
A
GLY
72
n
72
GLY
72
A
ILE
73
n
73
ILE
73
A
ILE
74
n
74
ILE
74
A
ILE
75
n
75
ILE
75
A
ASN
76
n
76
ASN
76
A
PRO
77
n
77
PRO
77
A
GLY
78
n
78
GLY
78
A
ALA
79
n
79
ALA
79
A
PHE
80
n
80
PHE
80
A
SER
81
n
81
SER
81
A
HIS
82
n
82
HIS
82
A
THR
83
n
83
THR
83
A
SER
84
n
84
SER
84
A
ILE
85
n
85
ILE
85
A
ALA
86
n
86
ALA
86
A
ILE
87
n
87
ILE
87
A
ALA
88
n
88
ALA
88
A
ASP
89
n
89
ASP
89
A
ALA
90
n
90
ALA
90
A
ILE
91
n
91
ILE
91
A
MET
92
n
92
MET
92
A
LEU
93
n
93
LEU
93
A
ALA
94
n
94
ALA
94
A
GLY
95
n
95
GLY
95
A
LYS
96
n
96
LYS
96
A
PRO
97
n
97
PRO
97
A
VAL
98
n
98
VAL
98
A
ILE
99
n
99
ILE
99
A
GLU
100
n
100
GLU
100
A
VAL
101
n
101
VAL
101
A
HIS
102
n
102
HIS
102
A
LEU
103
n
103
LEU
103
A
THR
104
n
104
THR
104
A
ASN
105
n
105
ASN
105
A
ILE
106
n
106
ILE
106
A
GLN
107
n
107
GLN
107
A
ALA
108
n
108
ALA
108
A
ARG
109
n
109
ARG
109
A
GLU
110
n
110
GLU
110
A
GLU
111
n
111
GLU
111
A
PHE
112
n
112
PHE
112
A
ARG
113
n
113
ARG
113
A
LYS
114
n
114
LYS
114
A
ASN
115
n
115
ASN
115
A
SER
116
n
116
SER
116
A
TYR
117
n
117
TYR
117
A
THR
118
n
118
THR
118
A
GLY
119
n
119
GLY
119
A
ALA
120
n
120
ALA
120
A
ALA
121
n
121
ALA
121
A
CYS
122
n
122
CYS
122
A
GLY
123
n
123
GLY
123
A
GLY
124
n
124
GLY
124
A
VAL
125
n
125
VAL
125
A
ILE
126
n
126
ILE
126
A
MET
127
n
127
MET
127
A
GLY
128
n
128
GLY
128
A
PHE
129
n
129
PHE
129
A
GLY
130
n
130
GLY
130
A
PRO
131
n
131
PRO
131
A
LEU
132
n
132
LEU
132
A
GLY
133
n
133
GLY
133
A
TYR
134
n
134
TYR
134
A
ASN
135
n
135
ASN
135
A
MET
136
n
136
MET
136
A
ALA
137
n
137
ALA
137
A
LEU
138
n
138
LEU
138
A
MET
139
n
139
MET
139
A
ALA
140
n
140
ALA
140
A
MET
141
n
141
MET
141
A
VAL
142
n
142
VAL
142
A
ASN
143
n
143
ASN
143
A
ILE
144
n
144
ILE
144
A
LEU
145
n
145
LEU
145
A
ALA
146
n
146
ALA
146
A
GLU
147
n
147
GLU
147
A
MET
148
n
148
MET
148
A
LYS
149
n
149
LYS
149
A
ALA
150
n
150
ALA
150
A
PHE
151
n
151
PHE
151
A
GLN
152
n
152
GLN
152
A
GLU
153
n
153
GLU
153
A
ALA
154
n
154
ALA
154
A
GLN
155
n
155
GLN
155
A
LYS
156
n
156
LYS
156
A
ASN
157
n
157
ASN
157
A
ASN
158
n
158
ASN
158
A
n
159
159
A
n
160
160
A
n
161
161
A
n
162
162
A
n
163
163
A
n
164
164
A
n
165
165
A
n
166
166
A
n
167
167
A
author_and_software_defined_assembly
PISA,PQS
12
dodecameric
31510
-201
75370
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_755
-x+2,-y,z
crystal symmetry operation
197.8200000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_757
-x+2,y,-z+2
crystal symmetry operation
197.8200000000
0.0000000000
197.8200000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_557
x,-y,-z+2
crystal symmetry operation
0.0000000000
0.0000000000
197.8200000000
0.0000000000
0.0000000000
1.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
5_546
z,x-1,y+1
crystal symmetry operation
0.0000000000
-98.9100000000
98.9100000000
0.0000000000
0.0000000000
1.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
6_566
z,-x+1,-y+1
crystal symmetry operation
0.0000000000
98.9100000000
98.9100000000
0.0000000000
0.0000000000
-1.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
7_766
-z+2,-x+1,y+1
crystal symmetry operation
197.8200000000
98.9100000000
98.9100000000
0.0000000000
0.0000000000
-1.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
8_746
-z+2,x-1,-y+1
crystal symmetry operation
197.8200000000
-98.9100000000
98.9100000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1.0000000000
0.0000000000
0.0000000000
9_645
y+1,z-1,x
crystal symmetry operation
98.9100000000
-98.9100000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
-1.0000000000
0.0000000000
0.0000000000
10_647
-y+1,z-1,-x+2
crystal symmetry operation
98.9100000000
-98.9100000000
197.8200000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
-1.0000000000
0.0000000000
0.0000000000
11_667
y+1,-z+1,-x+2
crystal symmetry operation
98.9100000000
98.9100000000
197.8200000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
1.0000000000
0.0000000000
0.0000000000
12_665
-y+1,-z+1,x
crystal symmetry operation
98.9100000000
98.9100000000
0.0000000000
A
O
PHE
50
A
O
PHE
50
A
N
GLN
7
A
N
GLN
7
A
N
LYS
2
A
N
LYS
2
A
O
GLU
71
A
O
GLU
71
A
N
ILE
75
A
N
ILE
75
A
O
VAL
101
A
O
VAL
101
A
N
GLU
100
A
N
GLU
100
A
O
ILE
126
A
O
ILE
126
1
A
PRO
159
A
PRO
159
1
Y
1
A
ASN
160
A
ASN
160
1
Y
1
A
ASN
161
A
ASN
161
1
Y
1
A
PRO
162
A
PRO
162
1
Y
1
A
ILE
163
A
ILE
163
1
Y
1
A
ASN
164
A
ASN
164
1
Y
1
A
ASN
165
A
ASN
165
1
Y
1
A
GLN
166
A
GLN
166
1
Y
1
A
LYS
167
A
LYS
167
1
Y
1
A
A
CE
CE
MET
MET
139
139
1.74
1_555
3_757
1
A
PRO
9
-24.96
-129.58
1
A
ASN
10
-49.21
19.08
1
A
THR
36
-56.64
-6.04
1
A
GLN
40
-63.11
-73.70
1
A
ASN
42
-53.11
97.73
1
A
ASP
44
-63.99
64.27
1
A
SER
68
-167.69
-36.80
1
A
ARG
109
-137.70
-155.90
1
A
LYS
156
-136.27
-36.57
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
DHQ.PARAM
DHQ.TOP
52.2
0.00
0.00
0.00
0.00
0.00
0.00
0.272
0.012
0.218
0.218
2.60
19.78
558
5469
5133
10.9
93.8
RANDOM
160671.11
0.000000
1
RESTRAINED
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 2DHQ
FLAT MODEL
46.0261
0.311869
0.45
0.34
5.00
0.49
0.34
2.60
19.78
19
1253
13
0
1221
0.009
1.4
23.7
0.85
4.51
1.50
6.53
2.00
7.11
2.00
8.60
2.50
0.397
0.045
0.338
2.76
77
642
6
10.7
81.8
53.5
2.5
44
1J2Y
6146
6146
0
0
0.086
1
38
100
2.5
2.64
0.484
1
100
refinement
CNS
1.1
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
CNS
Crystal structure of the type II 3-dehydroquinase
1
N
N
2
N
N
3
N
N
The biological assembly is dodecamer generated from the monomer in the asymmetric unit by the operations:
z, x-1, y+1 and
y+1,z-1,x and
-x+2, y, -z+2 and
-y+1, z-1, -x+2 and
-z+2,x-1,-y+1 and
-z+2, -x+1, y+1 and
-y+1,-z+1,x and
-x+2,-y,z and
y+1, -z+1, -x+2 and
x, -y, -z+2 and
z,-x+1, -y+1 and
A
PRO
9
A
PRO
9
HELX_P
A
LEU
14
A
LEU
14
5
1
6
A
ASP
28
A
ASP
28
HELX_P
A
GLY
41
A
GLY
41
1
2
14
A
PHE
54
A
PHE
54
HELX_P
A
SER
65
A
SER
65
1
3
12
A
PRO
77
A
PRO
77
HELX_P
A
THR
83
A
THR
83
5
4
7
A
SER
84
A
SER
84
HELX_P
A
ALA
94
A
ALA
94
1
5
11
A
ASN
105
A
ASN
105
HELX_P
A
ARG
109
A
ARG
109
5
6
5
A
GLU
110
A
GLU
110
HELX_P
A
LYS
114
A
LYS
114
5
7
5
A
PRO
131
A
PRO
131
HELX_P
A
GLU
153
A
GLU
153
1
8
23
LYASE
Lyase, 3-dehydroquinase
AROQ_HELPY
UNP
1
1
Q48255
MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSDYEGIIINPGAF
SHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNSYTGAACGGVIMGFGPLGYNMALMAMVNILAEMKAFQEAQKNNPN
NPINNQK
1
167
1J2Y
1
167
Q48255
A
1
1
167
5
parallel
parallel
parallel
parallel
A
GLU
46
A
GLU
46
A
GLN
51
A
GLN
51
A
LYS
2
A
LYS
2
A
GLN
7
A
GLN
7
A
TYR
70
A
TYR
70
A
ASN
76
A
ASN
76
A
VAL
98
A
VAL
98
A
HIS
102
A
HIS
102
A
GLY
124
A
GLY
124
A
MET
127
A
MET
127
BINDING SITE FOR RESIDUE DQA A 219
A
DQA
219
Software
11
A
ARG
17
A
ARG
17
11
1_555
A
TYR
22
A
TYR
22
11
1_555
A
ASN
76
A
ASN
76
11
1_555
A
GLY
78
A
GLY
78
11
1_555
A
HIS
82
A
HIS
82
11
1_555
A
ASP
89
A
ASP
89
11
5_546
A
HIS
102
A
HIS
102
11
1_555
A
LEU
103
A
LEU
103
11
1_555
A
THR
104
A
THR
104
11
1_555
A
ILE
106
A
ILE
106
11
1_555
A
ARG
113
A
ARG
113
11
1_555
208
P 42 3 2