0.029911 0.000000 0.000000 0.000000 0.015370 0.000000 0.000000 0.000000 0.012957 0.00000 0.00000 0.00000 Fujikawa, N. Kurumizaka, H. Nureki, O. Tanaka, Y. Yamazoe, M. Hiraga, S. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 33.432 65.061 77.176 C11 H16 N5 O6 P 345.248 n N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C Y 18 N N Y 19 N C Y 20 N N Y 21 N C N 22 N N N 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N N N 41 S C N 42 N C N 43 N O N 44 N C N 45 N O N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N N N 54 S C N 55 N C N 56 N O N 57 N C N 58 N C N 59 N C N 60 N N N 61 N C N 62 N N N 63 N N N 64 N O N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N N N 81 S C N 82 N C N 83 N O N 84 N C N 85 N C N 86 N O N 87 N N N 88 N O N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N N N 98 S C N 99 N C N 100 N O N 101 N C N 102 N C N 103 N O N 104 N O N 105 N O N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 R C N 115 N C N 116 N O N 117 N C N 118 N S N 119 N O N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N O N 128 N P N 129 N O N 130 N O N 131 N O N 132 N C N 133 R C N 134 N O N 135 S C N 136 N O N 137 N C N 138 R C Y 139 N N Y 140 N C Y 141 N N Y 142 N C Y 143 N C N 144 N N Y 145 N N Y 146 N C Y 147 N N Y 148 N C N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N O N 164 N P N 165 N O N 166 N O N 167 N O N 168 N C N 169 R C N 170 N O N 171 S C N 172 N O N 173 N C N 174 R C N 175 N N N 176 N C N 177 N O N 178 N N N 179 N C N 180 N N N 181 N C N 182 N C N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N O N 198 N P N 199 N O N 200 N O N 201 N O N 202 N C N 203 R C N 204 N O N 205 S C N 206 N O N 207 N C N 208 R C Y 209 N N Y 210 N C Y 211 N N Y 212 N C N 213 N C N 214 N O N 215 N N N 216 N C N 217 N N N 218 N N Y 219 N C N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N O N 235 N P N 236 N O N 237 N O N 238 N O N 239 N C N 240 R C N 241 N O N 242 S C N 243 N O N 244 N C N 245 R C N 246 N N N 247 N C N 248 N O N 249 N N N 250 N C N 251 N O N 252 N C N 253 N C N 254 N C N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N N N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N O N 298 N O N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N N N 310 N C N 311 N C N 312 N O N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C Y 324 N C Y 325 N N Y 326 N C Y 327 N C Y 328 N N N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N O N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 S C N 348 N C N 349 N C N 350 N C N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 N C N 370 N C N 371 N C N 372 N C N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N N N 388 S C N 389 N C N 390 N O N 391 N C N 392 N C N 393 N C N 394 N C N 395 N N N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N N N 413 S C N 414 N C N 415 N O N 416 N C N 417 N C N 418 N S N 419 N C N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N N N 433 S C N 434 N C N 435 N O N 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C N 443 N O N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N N N 456 S C N 457 N C N 458 N O N 459 N C N 460 N C N 461 N C N 462 N O N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N N N 473 S C N 474 N C N 475 N O N 476 N C N 477 N O N 478 N O N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N N N 487 S C N 488 N C N 489 N O N 490 R C N 491 N O N 492 N C N 493 N O N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N N N 504 S C N 505 N C N 506 N O N 507 N C Y 508 N C Y 509 N C Y 510 N C Y 511 N N Y 512 N C Y 513 N C Y 514 N C Y 515 N C Y 516 N C N 517 N O N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N N N 531 S C N 532 N C N 533 N O N 534 N C Y 535 N C Y 536 N C Y 537 N C Y 538 N C Y 539 N C Y 540 N C N 541 N O N 542 N O N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N N N 555 S C N 556 N C N 557 N O N 558 N C N 559 N C N 560 N C N 561 N O N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 572 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub Y 31 N doub N 32 N sing Y 33 N sing Y 34 N doub N 35 N sing Y 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N doub N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N doub N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing Y 147 N sing Y 148 N sing Y 149 N doub N 150 N sing Y 151 N sing Y 152 N sing Y 153 N doub N 154 N sing Y 155 N doub N 156 N sing N 157 N sing Y 158 N sing Y 159 N doub N 160 N sing Y 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing Y 220 N sing Y 221 N sing Y 222 N doub N 223 N sing Y 224 N sing N 225 N sing Y 226 N doub N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing Y 330 N sing Y 331 N doub Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing Y 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N doub N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N doub N 434 N sing N 435 N sing N 436 N sing N 437 N sing Y 438 N doub Y 439 N sing Y 440 N sing N 441 N sing Y 442 N doub N 443 N sing Y 444 N doub N 445 N sing Y 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N doub N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N doub N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N doub N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N doub N 503 N sing N 504 N sing N 505 N sing N 506 N sing Y 507 N doub Y 508 N sing Y 509 N sing N 510 N sing Y 511 N doub Y 512 N sing Y 513 N sing N 514 N sing Y 515 N sing Y 516 N doub N 517 N sing Y 518 N doub N 519 N sing Y 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N doub N 531 N sing N 532 N sing N 533 N sing N 534 N sing Y 535 N doub Y 536 N sing Y 537 N sing N 538 N sing Y 539 N doub N 540 N sing Y 541 N doub N 542 N sing Y 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N doub N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing N 565 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 32 82 92 10.1093/nar/gkh173 14704346 Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein 2004 10.2210/pdb1j3e/pdb pdb_00001j3e 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2002-10-26 MARRESEARCH rotated-inclined fixed exit double crystal SINGLE WAVELENGTH M x-ray 1 0.9740 1.0 BL41XU SPring-8 0.9740 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 3076.071 5'-D(*AP*AP*GP*GP*(6MA)P*TP*CP*CP*AP*A)-3' 1 syn polymer 3051.002 5'-D(*TP*TP*GP*GP*AP*GP*CP*CP*TP*T)-3' 1 syn polymer 12978.878 SeqA protein DNA binding domain 1 man polymer 18.015 water 84 nat water no yes (DA)(DA)(DG)(DG)(6MA)(DT)(DC)(DC)(DA)(DA) AAGGATCCAA B polydeoxyribonucleotide no no (DT)(DT)(DG)(DG)(DA)(DG)(DC)(DC)(DT)(DT) TTGGAGCCTT C polydeoxyribonucleotide no no PLGSAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYW VITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI PLGSAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYW VITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI A trt001000146.2 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample SeqA 562 Escherichia coli 562 Escherichia coli DH5a plasmid pGEX6P-1 1 2.18 43.06 VAPOR DIFFUSION, HANGING DROP 6.5 Ca-acetate, Na-cacodylate, PEG8K, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 PEG 8000 1 Ca-acetate 1 Na-cacodylate 1 PEG 8000 2 Ca-acetate 2 Na-cacodylate 2 -4.878 1 20 B 201 C 220 5.724 B_DA201:DT220_C 1 -11.657 0.295 -0.072 -0.445 1.309 1 20 B 202 C 219 -3.728 B_DA202:DT219_C 2 -12.653 1.166 0.333 -0.218 2.202 1 19 B 203 C 218 -2.085 B_DG203:DC218_C 3 -3.340 -0.251 0.428 0.061 11.284 1 19 B 204 C 217 -3.518 B_DG204:DC217_C 4 -7.851 0.223 0.263 -0.018 4.301 1 8 B 205 C 216 -6.368 B_6MA205:DG216_C 5 -24.811 -0.333 -0.295 1.566 1.902 1 20 B 206 C 215 -4.404 B_DT206:DA215_C 6 -7.411 -0.470 -0.281 -0.185 4.425 1 19 B 207 C 214 -0.692 B_DC207:DG214_C 7 -4.724 0.212 0.013 -0.306 6.521 1 19 B 208 C 213 -3.264 B_DC208:DG213_C 8 -1.911 -0.075 -0.266 -0.246 2.717 1 20 B 209 C 212 -7.096 B_DA209:DT212_C 9 -7.823 0.656 0.041 -0.211 0.896 1 20 B 210 C 211 -3.686 B_DA210:DT211_C 10 -2.822 0.547 -0.198 -0.307 3.178 43.608 B B 201 202 -3.935 C C 220 219 3.145 -2.918 -0.518 -0.111 BB_DA201DA202:DT219DT220_CC 1 -3.783 5.102 43.358 0.122 0.345 3.226 31.943 B B 202 203 -5.496 C C 219 218 3.257 -3.020 0.327 0.277 BB_DA202DG203:DC218DT219_CC 2 0.987 -1.796 31.789 1.046 -0.417 3.420 30.140 B B 203 204 9.381 C C 218 217 3.308 4.853 0.552 0.758 BB_DG203DG204:DC217DC218_CC 3 2.439 -4.715 29.658 0.431 -0.547 3.236 36.539 B B 204 205 -4.102 C C 217 216 3.418 -2.566 -1.037 0.773 BB_DG2046MA205:DG216DC217_CC 4 3.794 -6.067 36.261 1.594 2.189 2.921 40.816 B B 205 206 -15.671 C C 216 215 3.247 -10.806 1.119 1.044 BB_6MA205DT206:DA215DG216_CC 5 1.889 -2.739 39.375 2.641 -1.405 3.269 30.377 B B 206 207 13.567 C C 215 214 3.352 7.047 0.403 0.052 BB_DT206DC207:DG214DA215_CC 6 -0.501 0.965 29.563 -1.353 -0.872 3.259 37.395 B B 207 208 1.233 C C 214 213 3.245 0.789 0.342 -0.123 BB_DC207DC208:DG213DG214_CC 7 3.519 -5.496 37.227 -0.295 -0.072 3.396 38.476 B B 208 209 5.058 C C 213 212 3.434 3.329 -0.297 -0.391 BB_DC208DA209:DT212DG213_CC 8 -1.011 1.536 38.324 -1.026 0.319 3.383 39.282 B B 209 210 1.340 C C 212 211 3.353 0.900 0.509 0.121 BB_DA209DA210:DT211DT212_CC 9 2.950 -4.393 39.165 0.069 -0.395 RIKEN Structural Genomics/Proteomics Initiative RSGI chem_comp_atom chem_comp_bond database_2 struct_conn struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2004-05-18 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details Y PDBJ Y PDBJ 2003-01-24 REL REL HOH water TIP 3 4 HOH HOH 3 B TIP 4 4 HOH HOH 4 B TIP 5 4 HOH HOH 5 B TIP 14 4 HOH HOH 14 B TIP 21 4 HOH HOH 21 B TIP 22 4 HOH HOH 22 B TIP 29 4 HOH HOH 29 B TIP 30 4 HOH HOH 30 B TIP 43 4 HOH HOH 43 B TIP 54 4 HOH HOH 54 B TIP 56 4 HOH HOH 56 B TIP 67 4 HOH HOH 67 B TIP 73 4 HOH HOH 73 B TIP 79 4 HOH HOH 79 B TIP 80 4 HOH HOH 80 B TIP 6 4 HOH HOH 6 C TIP 11 4 HOH HOH 11 C TIP 12 4 HOH HOH 12 C TIP 16 4 HOH HOH 16 C TIP 33 4 HOH HOH 33 C TIP 37 4 HOH HOH 37 C TIP 40 4 HOH HOH 40 C TIP 44 4 HOH HOH 44 C TIP 52 4 HOH HOH 52 C TIP 57 4 HOH HOH 57 C TIP 58 4 HOH HOH 58 C TIP 69 4 HOH HOH 69 C TIP 76 4 HOH HOH 76 C TIP 77 4 HOH HOH 77 C TIP 83 4 HOH HOH 83 C TIP 1 4 HOH HOH 117 A TIP 2 4 HOH HOH 118 A TIP 7 4 HOH HOH 119 A TIP 8 4 HOH HOH 120 A TIP 9 4 HOH HOH 121 A TIP 10 4 HOH HOH 122 A TIP 13 4 HOH HOH 123 A TIP 15 4 HOH HOH 124 A TIP 17 4 HOH HOH 125 A TIP 18 4 HOH HOH 126 A TIP 19 4 HOH HOH 127 A TIP 20 4 HOH HOH 128 A TIP 23 4 HOH HOH 129 A TIP 24 4 HOH HOH 130 A TIP 25 4 HOH HOH 131 A TIP 26 4 HOH HOH 132 A TIP 27 4 HOH HOH 133 A TIP 28 4 HOH HOH 134 A TIP 31 4 HOH HOH 135 A TIP 32 4 HOH HOH 136 A TIP 34 4 HOH HOH 137 A TIP 35 4 HOH HOH 138 A TIP 36 4 HOH HOH 139 A TIP 38 4 HOH HOH 140 A TIP 39 4 HOH HOH 141 A TIP 41 4 HOH HOH 142 A TIP 42 4 HOH HOH 143 A TIP 45 4 HOH HOH 144 A TIP 46 4 HOH HOH 145 A TIP 47 4 HOH HOH 146 A TIP 48 4 HOH HOH 147 A TIP 49 4 HOH HOH 148 A TIP 50 4 HOH HOH 149 A TIP 51 4 HOH HOH 150 A TIP 53 4 HOH HOH 151 A TIP 55 4 HOH HOH 152 A TIP 59 4 HOH HOH 153 A TIP 60 4 HOH HOH 154 A TIP 61 4 HOH HOH 155 A TIP 62 4 HOH HOH 156 A TIP 63 4 HOH HOH 157 A TIP 64 4 HOH HOH 158 A TIP 65 4 HOH HOH 159 A TIP 66 4 HOH HOH 160 A TIP 68 4 HOH HOH 161 A TIP 70 4 HOH HOH 162 A TIP 71 4 HOH HOH 163 A TIP 72 4 HOH HOH 164 A TIP 74 4 HOH HOH 165 A TIP 75 4 HOH HOH 166 A TIP 78 4 HOH HOH 167 A TIP 81 4 HOH HOH 168 A TIP 82 4 HOH HOH 169 A TIP 84 4 HOH HOH 170 A A 201 n 1 DA 201 B A 202 n 2 DA 202 B G 203 n 3 DG 203 B G 204 n 4 DG 204 B 6MA 205 n 5 6MA 205 B T 206 n 6 DT 206 B C 207 n 7 DC 207 B C 208 n 8 DC 208 B A 209 n 9 DA 209 B A 210 n 10 DA 210 B T 211 n 1 DT 211 C T 212 n 2 DT 212 C G 213 n 3 DG 213 C G 214 n 4 DG 214 C A 215 n 5 DA 215 C G 216 n 6 DG 216 C C 217 n 7 DC 217 C C 218 n 8 DC 218 C T 219 n 9 DT 219 C T 220 n 10 DT 220 C PRO 2 n 1 PRO 2 A LEU 3 n 2 LEU 3 A GLY 4 n 3 GLY 4 A SER 5 n 4 SER 5 A ALA 6 n 5 ALA 6 A MET 7 n 6 MET 7 A ARG 8 n 7 ARG 8 A GLU 9 n 8 GLU 9 A LEU 10 n 9 LEU 10 A LEU 11 n 10 LEU 11 A LEU 12 n 11 LEU 12 A SER 13 n 12 SER 13 A ASP 14 n 13 ASP 14 A GLU 15 n 14 GLU 15 A TYR 16 n 15 TYR 16 A ALA 17 n 16 ALA 17 A GLU 18 n 17 GLU 18 A GLN 19 n 18 GLN 19 A LYS 20 n 19 LYS 20 A ARG 21 n 20 ARG 21 A ALA 22 n 21 ALA 22 A VAL 23 n 22 VAL 23 A ASN 24 n 23 ASN 24 A ARG 25 n 24 ARG 25 A PHE 26 n 25 PHE 26 A MET 27 n 26 MET 27 A LEU 28 n 27 LEU 28 A LEU 29 n 28 LEU 29 A LEU 30 n 29 LEU 30 A SER 31 n 30 SER 31 A THR 32 n 31 THR 32 A LEU 33 n 32 LEU 33 A TYR 34 n 33 TYR 34 A SER 35 n 34 SER 35 A LEU 36 n 35 LEU 36 A ASP 37 n 36 ASP 37 A ALA 38 n 37 ALA 38 A GLN 39 n 38 GLN 39 A ALA 40 n 39 ALA 40 A PHE 41 n 40 PHE 41 A ALA 42 n 41 ALA 42 A GLU 43 n 42 GLU 43 A ALA 44 n 43 ALA 44 A THR 45 n 44 THR 45 A GLU 46 n 45 GLU 46 A SER 47 n 46 SER 47 A LEU 48 n 47 LEU 48 A HIS 49 n 48 HIS 49 A GLY 50 n 49 GLY 50 A ARG 51 n 50 ARG 51 A THR 52 n 51 THR 52 A ARG 53 n 52 ARG 53 A VAL 54 n 53 VAL 54 A TYR 55 n 54 TYR 55 A PHE 56 n 55 PHE 56 A ALA 57 n 56 ALA 57 A ALA 58 n 57 ALA 58 A ASP 59 n 58 ASP 59 A GLU 60 n 59 GLU 60 A GLN 61 n 60 GLN 61 A THR 62 n 61 THR 62 A LEU 63 n 62 LEU 63 A LEU 64 n 63 LEU 64 A LYS 65 n 64 LYS 65 A ASN 66 n 65 ASN 66 A GLY 67 n 66 GLY 67 A ASN 68 n 67 ASN 68 A GLN 69 n 68 GLN 69 A THR 70 n 69 THR 70 A LYS 71 n 70 LYS 71 A PRO 72 n 71 PRO 72 A LYS 73 n 72 LYS 73 A HIS 74 n 73 HIS 74 A VAL 75 n 74 VAL 75 A PRO 76 n 75 PRO 76 A GLY 77 n 76 GLY 77 A THR 78 n 77 THR 78 A PRO 79 n 78 PRO 79 A TYR 80 n 79 TYR 80 A TRP 81 n 80 TRP 81 A VAL 82 n 81 VAL 82 A ILE 83 n 82 ILE 83 A THR 84 n 83 THR 84 A ASN 85 n 84 ASN 85 A THR 86 n 85 THR 86 A ASN 87 n 86 ASN 87 A THR 88 n 87 THR 88 A GLY 89 n 88 GLY 89 A ARG 90 n 89 ARG 90 A LYS 91 n 90 LYS 91 A CYS 92 n 91 CYS 92 A SER 93 n 92 SER 93 A MET 94 n 93 MET 94 A ILE 95 n 94 ILE 95 A GLU 96 n 95 GLU 96 A HIS 97 n 96 HIS 97 A ILE 98 n 97 ILE 98 A MET 99 n 98 MET 99 A GLN 100 n 99 GLN 100 A SER 101 n 100 SER 101 A MET 102 n 101 MET 102 A GLN 103 n 102 GLN 103 A PHE 104 n 103 PHE 104 A PRO 105 n 104 PRO 105 A ALA 106 n 105 ALA 106 A GLU 107 n 106 GLU 107 A LEU 108 n 107 LEU 108 A ILE 109 n 108 ILE 109 A GLU 110 n 109 GLU 110 A LYS 111 n 110 LYS 111 A VAL 112 n 111 VAL 112 A CYS 113 n 112 CYS 113 A GLY 114 n 113 GLY 114 A THR 115 n 114 THR 115 A ILE 116 n 115 ILE 116 A author_defined_assembly 3 trimeric B 6MA 205 A 6MA 5 A 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 57 C N ALA 56 A O TRP 81 C O TRP 80 A O VAL 82 C O VAL 81 A N LYS 73 C N LYS 72 1 B DG 203 0.058 SIDE CHAIN 1 A SER 13 -45.86 158.22 1 A ASP 37 -151.33 69.85 1 A ALA 38 -39.41 -28.07 1 A THR 52 -147.29 -25.85 1 A MET 102 -72.86 26.58 1 A GLN 103 27.15 80.46 0.296 0.2302 0.2302 2.5 40 343 6228 6094 RANDOM 1 0 MOLECULAR REPLACEMENT Engh & Huber 0.50 0.35 5 0.52 0.44 2.5 40 84 1399 0 407 908 1.40 0.00983 19.7 1.41 0.415 0.3552 2.59 40 6 0.3946 0.3257 2.69 33 6 0.4517 0.3126 2.82 30 6 0.4306 0.2962 2.96 26 6 0.331 0.2687 3.15 33 6 0.2335 0.2175 3.39 45 6 2.5 50 1J3E 6296 6126 0 0 1 97.3 2.50 2.59 94.9 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 1.0 Crystal Structure of the E.coli SeqA protein complexed with N6-methyladenine- guanine mismatch DNA 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N A PRO 2 C PRO 1 HELX_P A SER 13 C SER 12 1 1 12 A SER 13 C SER 12 HELX_P A GLN 19 C GLN 18 1 2 7 A ARG 21 C ARG 20 HELX_P A ASP 37 C ASP 36 1 3 17 A ASP 37 C ASP 36 HELX_P A SER 47 C SER 46 1 4 11 A GLU 60 C GLU 59 HELX_P A ASN 66 C ASN 65 1 5 7 A ASN 87 C ASN 86 HELX_P A MET 102 C MET 101 1 6 16 A PRO 105 C PRO 104 HELX_P A GLY 114 C GLY 113 1 7 10 disulf 2.946 A CYS 92 C SG CYS 91 1_555 A CYS 113 C SG CYS 112 1_555 covale 1.603 both B DG 204 A O3' DG 4 1_555 B 6MA 205 A P 6MA 5 1_555 covale 1.601 both B 6MA 205 A O3' 6MA 5 1_555 B DT 206 A P DT 6 1_555 hydrog WATSON-CRICK B DA 201 A N1 DA 1 1_555 C DT 220 B N3 DT 10 1_555 hydrog WATSON-CRICK B DA 201 A N6 DA 1 1_555 C DT 220 B O4 DT 10 1_555 hydrog WATSON-CRICK B DA 202 A N1 DA 2 1_555 C DT 219 B N3 DT 9 1_555 hydrog WATSON-CRICK B DA 202 A N6 DA 2 1_555 C DT 219 B O4 DT 9 1_555 hydrog WATSON-CRICK B DG 203 A N1 DG 3 1_555 C DC 218 B N3 DC 8 1_555 hydrog WATSON-CRICK B DG 203 A N2 DG 3 1_555 C DC 218 B O2 DC 8 1_555 hydrog WATSON-CRICK B DG 203 A O6 DG 3 1_555 C DC 218 B N4 DC 8 1_555 hydrog WATSON-CRICK B DG 204 A N1 DG 4 1_555 C DC 217 B N3 DC 7 1_555 hydrog WATSON-CRICK B DG 204 A N2 DG 4 1_555 C DC 217 B O2 DC 7 1_555 hydrog WATSON-CRICK B DG 204 A O6 DG 4 1_555 C DC 217 B N4 DC 7 1_555 hydrog TYPE_8_PAIR B 6MA 205 A N1 6MA 5 1_555 C DG 216 B N1 DG 6 1_555 hydrog TYPE_8_PAIR B 6MA 205 A N6 6MA 5 1_555 C DG 216 B O6 DG 6 1_555 hydrog WATSON-CRICK B DT 206 A N3 DT 6 1_555 C DA 215 B N1 DA 5 1_555 hydrog WATSON-CRICK B DT 206 A O4 DT 6 1_555 C DA 215 B N6 DA 5 1_555 hydrog WATSON-CRICK B DC 207 A N3 DC 7 1_555 C DG 214 B N1 DG 4 1_555 hydrog WATSON-CRICK B DC 207 A N4 DC 7 1_555 C DG 214 B O6 DG 4 1_555 hydrog WATSON-CRICK B DC 207 A O2 DC 7 1_555 C DG 214 B N2 DG 4 1_555 hydrog WATSON-CRICK B DC 208 A N3 DC 8 1_555 C DG 213 B N1 DG 3 1_555 hydrog WATSON-CRICK B DC 208 A N4 DC 8 1_555 C DG 213 B O6 DG 3 1_555 hydrog WATSON-CRICK B DC 208 A O2 DC 8 1_555 C DG 213 B N2 DG 3 1_555 hydrog WATSON-CRICK B DA 209 A N1 DA 9 1_555 C DT 212 B N3 DT 2 1_555 hydrog WATSON-CRICK B DA 209 A N6 DA 9 1_555 C DT 212 B O4 DT 2 1_555 hydrog WATSON-CRICK B DA 210 A N1 DA 10 1_555 C DT 211 B N3 DT 1 1_555 hydrog WATSON-CRICK B DA 210 A N6 DA 10 1_555 C DT 211 B O4 DT 1 1_555 REPLICATION/DNA Protein-DNA complex, Recognition of hemimethylated DNA, mismatched DNA, replication, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, REPLICATION-DNA COMPLEX SEQA_ECOLI UNP 3 P36658 AMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITN TNTGRKCSMIEHIMQSMQFPAELIEKVCGTI 1J3E PDB 1 1J3E 1J3E PDB 2 1J3E 71 181 1J3E 6 116 P36658 A 1 5 115 201 210 1J3E 201 210 1J3E B 2 1 10 211 220 1J3E 211 220 1J3E C 3 1 10 1 cloning artifact PRO 2 1J3E A P36658 UNP 1 1 cloning artifact LEU 3 1J3E A P36658 UNP 2 1 cloning artifact GLY 4 1J3E A P36658 UNP 3 1 cloning artifact SER 5 1J3E A P36658 UNP 4 3 anti-parallel anti-parallel A PHE 56 C PHE 55 A ALA 57 C ALA 56 A TRP 81 C TRP 80 A VAL 82 C VAL 81 A LYS 73 C LYS 72 A HIS 74 C HIS 73 19 P 21 21 21