1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Clore, G.M. Murphy, E.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C Y 90 N C N 91 N N Y 92 N N Y 93 N C Y 94 N N Y 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 N C N 121 R C N 122 N N N 123 N C N 124 N O N 125 N N N 126 N C N 127 N N N 128 N C N 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N P N 146 N O N 147 N O N 148 N O N 149 N C N 150 R C N 151 N O N 152 S C N 153 N O N 154 N C N 155 R C Y 156 N N Y 157 N C Y 158 N N Y 159 N C N 160 N C N 161 N O N 162 N N N 163 N C N 164 N N N 165 N N Y 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N P N 183 N O N 184 N O N 185 N O N 186 N C N 187 R C N 188 N O N 189 S C N 190 N O N 191 N C N 192 R C N 193 N N N 194 N C N 195 N O N 196 N N N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N O N 225 N N N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N O N 245 N O N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 N C N 258 N C N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C Y 271 N C Y 272 N N Y 273 N C Y 274 N C Y 275 N N N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 S C N 292 N C N 293 N C N 294 N C N 295 N O N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N N N 310 S C N 311 N C N 312 N O N 313 N C N 314 N C N 315 N C N 316 N C N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C N 336 N C N 337 N C N 338 N C N 339 N N N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N N N 357 S C N 358 N C N 359 N O N 360 N C N 361 N C N 362 N S N 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C Y 386 N C N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C N 404 N C N 405 N C N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N O N 422 N O N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N N N 431 S C N 432 N C N 433 N O N 434 R C N 435 N O N 436 N C N 437 N O N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 N C Y 452 N C Y 453 N C Y 454 N C Y 455 N N Y 456 N C Y 457 N C Y 458 N C Y 459 N C Y 460 N C N 461 N O N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N N N 475 S C N 476 N C N 477 N O N 478 N C Y 479 N C Y 480 N C Y 481 N C Y 482 N C Y 483 N C Y 484 N C N 485 N O N 486 N O N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N N N 499 S C N 500 N C N 501 N O N 502 N C N 503 N C N 504 N C N 505 N O N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing Y 93 N sing Y 94 N sing Y 95 N doub N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N doub N 102 N sing N 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing Y 166 N sing Y 167 N sing Y 168 N doub N 169 N sing Y 170 N sing N 171 N sing Y 172 N doub N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing Y 276 N sing Y 277 N doub Y 278 N doub N 279 N sing Y 280 N sing N 281 N sing Y 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing Y 382 N doub Y 383 N sing Y 384 N sing N 385 N sing Y 386 N doub N 387 N sing Y 388 N doub N 389 N sing Y 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N doub N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N doub N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N doub N 447 N sing N 448 N sing N 449 N sing N 450 N sing Y 451 N doub Y 452 N sing Y 453 N sing N 454 N sing Y 455 N doub Y 456 N sing Y 457 N sing N 458 N sing Y 459 N sing Y 460 N doub N 461 N sing Y 462 N doub N 463 N sing Y 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N doub N 475 N sing N 476 N sing N 477 N sing N 478 N sing Y 479 N doub Y 480 N sing Y 481 N sing N 482 N sing Y 483 N doub N 484 N sing Y 485 N doub N 486 N sing Y 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N doub N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 312 481 499 10.1006/jmbi.2001.4977 11563911 Structural basis for SRY-dependent 46-X,Y sex reversal: modulation of DNA bending by a naturally occurring point mutation. 2001 10.2210/pdb1j46/pdb pdb_00001j46 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 4178.747 5'-D(*CP*CP*TP*GP*CP*AP*CP*AP*AP*AP*CP*AP*CP*C)-3' 1 syn polymer 4382.835 5'-D(*GP*GP*TP*GP*TP*TP*TP*GP*TP*GP*CP*AP*GP*G)-3' 1 syn polymer 10654.570 SEX-DETERMINING REGION Y PROTEIN HMG-BOX DOMAIN 1 man polymer SRY no no (DC)(DC)(DT)(DG)(DC)(DA)(DC)(DA)(DA)(DA)(DC)(DA)(DC)(DC) CCTGCACAAACACC B polydeoxyribonucleotide no no (DG)(DG)(DT)(DG)(DT)(DT)(DT)(DG)(DT)(DG)(DC)(DA)(DG)(DG) GGTGTTTGTGCAGG C polydeoxyribonucleotide no no MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKA KMLPK MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKA KMLPK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) BL21(DE3) pET21a -6.087 1 19 B 101 C 128 -1.785 B_DC101:DG128_C 1 -2.247 0.048 0.104 -0.177 -2.740 1 19 B 102 C 127 -0.829 B_DC102:DG127_C 2 -13.302 0.100 0.129 -0.212 -4.489 1 20 B 103 C 126 -2.309 B_DT103:DA126_C 3 -12.784 -0.011 0.228 -0.123 7.852 1 19 B 104 C 125 -2.125 B_DG104:DC125_C 4 -7.993 -0.034 0.030 -0.193 4.444 1 19 B 105 C 124 -1.681 B_DC105:DG124_C 5 -10.713 0.098 -0.081 -0.168 2.095 1 20 B 106 C 123 -2.813 B_DA106:DT123_C 6 -13.890 0.014 -0.020 -0.110 -2.016 1 19 B 107 C 122 -2.620 B_DC107:DG122_C 7 -5.733 0.017 -0.012 -0.163 -15.097 1 20 B 108 C 121 0.050 B_DA108:DT121_C 8 -15.911 0.003 -0.353 -0.122 14.750 1 20 B 109 C 120 -1.418 B_DA109:DT120_C 9 7.729 0.031 0.873 -0.124 10.401 1 20 B 110 C 119 1.783 B_DA110:DT119_C 10 16.878 0.044 0.556 -0.104 8.661 1 19 B 111 C 118 2.987 B_DC111:DG118_C 11 17.362 0.034 0.169 -0.173 15.784 1 20 B 112 C 117 5.218 B_DA112:DT117_C 12 -23.497 0.052 -0.261 -0.172 -3.040 1 19 B 113 C 116 0.867 B_DC113:DG116_C 13 -19.802 0.081 -0.030 -0.205 -9.686 1 19 B 114 C 115 -0.601 B_DC114:DG115_C 14 -3.333 0.150 0.107 -0.170 3.534 32.421 B B 101 102 11.491 C C 128 127 3.597 6.375 -0.238 0.052 BB_DC101DC102:DG127DG128_CC 1 0.712 -1.284 31.796 -1.141 0.565 3.637 34.943 B B 102 103 6.759 C C 127 126 3.664 4.049 -0.100 -0.038 BB_DC102DT103:DA126DG127_CC 2 -1.095 1.827 34.699 -0.748 -0.019 3.299 33.626 B B 103 104 1.186 C C 126 125 3.293 0.686 0.204 0.032 BB_DT103DG104:DC125DA126_CC 3 2.466 -4.266 33.531 -0.057 0.054 3.746 37.881 B B 104 105 -2.614 C C 125 124 3.762 -1.696 0.054 0.278 BB_DG104DC105:DG124DC125_CC 4 1.365 -2.104 37.821 0.678 0.117 3.705 33.067 B B 105 106 12.739 C C 124 123 3.723 7.195 0.136 0.304 BB_DC105DA106:DT123DG124_CC 5 0.969 -1.716 32.282 -0.865 -0.051 3.372 33.999 B B 106 107 15.900 C C 123 122 3.660 9.188 0.656 -0.644 BB_DA106DC107:DG122DT123_CC 6 0.518 -0.896 32.765 -2.711 -1.031 3.820 38.957 B B 107 108 16.104 C C 122 121 3.886 10.611 -0.739 0.170 BB_DC107DA108:DT121DG122_CC 7 -1.586 2.406 37.506 -1.290 0.878 2.617 32.751 B B 108 109 42.926 C C 121 120 3.279 21.627 -0.375 0.385 BB_DA108DA109:DT120DT121_CC 8 -10.862 21.559 22.233 -3.365 -1.368 4.316 28.354 B B 109 110 13.200 C C 120 119 4.501 6.411 0.180 -0.289 BB_DA109DA110:DT119DT120_CC 9 -1.044 2.150 27.615 -2.612 -0.697 3.051 29.371 B B 110 111 29.248 C C 119 118 3.923 14.200 0.095 -0.808 BB_DA110DC111:DG118DT119_CC 10 3.225 -6.644 25.576 -5.085 0.606 3.049 36.609 B B 111 112 17.794 C C 118 117 3.214 10.939 -0.858 0.723 BB_DC111DA112:DT117DG118_CC 11 7.487 -12.178 34.202 -0.342 2.388 3.608 37.706 B B 112 113 13.942 C C 117 116 3.803 8.928 -0.118 -0.418 BB_DA112DC113:DG116DT117_CC 12 -1.733 2.707 36.632 -1.976 -0.075 3.619 35.223 B B 113 114 13.177 C C 116 115 3.656 7.904 -0.283 0.180 BB_DC113DC114:DG115DG116_CC 13 -2.406 4.011 34.271 -1.027 0.065 database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Data collection 1 0 2001-10-03 1 1 2008-04-26 1 2 2011-07-13 1 3 2022-02-23 1 4 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details M9I MUTANT OF THE HMG-BOX DOMAIN OF THE HUMAN MALE SEX DETERMINING FACTOR SRY COMPLEXED TO DNA RCSB Y RCSB 2001-07-23 REL THE FOLLOWING EXPERIMENTS WERE CONDUCTED: (1) DOUBLE AND TRIPLE RESONANCE FOR ASSIGNMENT OF PROTEIN; (2) DOUBLE RESONANCE AND HETERONUCLEAR FILTERED FOR DNA; (3) QUANTITATIVE J CORRELATION FOR COUPLING CONSTANTS; (4) 2D, 3D AND 4D HETERONUCLEAR SEPARATED AND FILTERED NOE EXPERIMENTS; (4) 2D and 3D DOUBLE AND TRIPLE RESONANCE EXPERIMENTS FOR DIPOLAR COUPLING MEASUREMENTS IN LIQUID CRYSTALLINE MEDIUM OF 4.5-5% 3:1 DMPC:DHPC RESTRAINED REGULARIZED MEAN STRUCTURE 400 1 50 mM SODIUM PHOSPHATE 7.2 308.00 K THE STRUCTURE WAS CALCULATED BY SIMULATED ANNEALING IN TORSION ANGLE SPACE (C. SCHWIETERS AND G.M. CLORE. J. MAGN. RESON., IN PRESS). THE TARGET FUNCTION COMPRISES TERMS FOR NOE RESTRAINTS, TORSION ANGLE RESTRAINTS, CARBON CHEMICAL SHIFT RESTRAINTS (KUSZWESKI ET AL. J. MAGN. RESON. SERIES B 106, 92-96 (1995), J COUPLING RESTRAINTS (GARRETT ET AL. J. MAGN. RESON. SERIES B 104, 99, 103 (1994); DIPOLAR COUPLING RESTRAINTS (CLORE ET AL. J.MAGN.RESON. 131, 159-162 (1998); J.MAGN.RESON. 133, 216-221(1998)), AND RADIUS OF GYRATION (KUSZEWSKI ET AL. JACS 121, 2337 (1999)). THE NON-BONDED CONTACTS ARE REPRESENTED BY A QUARTIC VAN DER WAALS REPULSION TERM (NILGES ET AL. (1988) FEBS LETT. 229, 129-136); THE DELPHIC TORSION ANGLE DATABASE POTENTIAL (KUSZEWSKI & C J. MAGN. RESON. 146, 249 (2000)); AND THE DELPHIC BASE-BASE POSITIONAL DATABASE POTENTIAL (KUSZEWSKI ET AL. JACS 123, 3903 (2001)). IN THIS ENTRY THE SECOND TO LAST COLUMN REPRESENTS THE AVERAGE RMS DIFFERENCE BETWEEN THE INDIVIDUAL SIMULATED ANNEALING STRUCTURES (400 FOR THE WILD TYPE COMPLEX) AND THE MEAN COORDINATE POSITIONS (OBTAINED BY BEST FITTING TO RESIDUES 4-81 OF THE PROTEIN AND 101-128 OF THE DNA). WILD TYPE M9I MUTANT PDB ID: 1J46 1J47 DEVIATIONS FROM IDEALIZED GEOMETRY: BONDS 0.003 A 0.003 A ANGLES 0.81 DEG 0.80 DEG IMPROPERS 0.79 DEG 0.79 DEG DEVIATIONS FROM EXPT RESTRAINTS NOES (1795/1693) 0.04 A 0.03 A TORSION ANGLES (433/429) 0.29 DEG 0.30 DEG 3JHNA COUPLINGS (70/66) 0.84 HZ 0.90 HZ 13C CHEMICAL SHIFTS (165/165) 0.99 PPM 0.95 PPM HETERONUCLEAR DIPOLAR COUPLING R-FACTORS (CLORE AND GARRETT J. AM. CHEM. SOC. 121, 9008-9012): PROTEIN 1DNH (71/66) 5.5% 7.6% PROTEIN 1DCH (67/67) 6.3% 10.0% PROTEIN 1DNC' (68/62) 18.9% 28.9% PROTEIN 2DHNC'(68/62) 18.8% 21.6% DNA 1DNH (9/10) 10.2% 16.1% DNA 1DCH (37/33) 11.2% 10.7% DNA 1H-1H DIPOLAR COUPLINGS (55/53) 0.56 HZ 0.75 HZ % RESIDUES IN MOST FAVORABLE REGION OF RAMACHADRAN MAP 94.7% 94.7% CLORE, KUSZEWSKI, SCHWIETERS refinement X-PLOR NIH VERSION (HTTP://NMR.CIT.NIH.GOV) (HTTP://NMR.CIT.NIH.GOV) 500 Bruker DMX500 600 Bruker DRX600 750 Bruker DRX750 C 101 n 1 DC 101 B C 102 n 2 DC 102 B T 103 n 3 DT 103 B G 104 n 4 DG 104 B C 105 n 5 DC 105 B A 106 n 6 DA 106 B C 107 n 7 DC 107 B A 108 n 8 DA 108 B A 109 n 9 DA 109 B A 110 n 10 DA 110 B C 111 n 11 DC 111 B A 112 n 12 DA 112 B C 113 n 13 DC 113 B C 114 n 14 DC 114 B G 115 n 1 DG 115 C G 116 n 2 DG 116 C T 117 n 3 DT 117 C G 118 n 4 DG 118 C T 119 n 5 DT 119 C T 120 n 6 DT 120 C T 121 n 7 DT 121 C G 122 n 8 DG 122 C T 123 n 9 DT 123 C G 124 n 10 DG 124 C C 125 n 11 DC 125 C A 126 n 12 DA 126 C G 127 n 13 DG 127 C G 128 n 14 DG 128 C MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A ASP 3 n 3 ASP 3 A ARG 4 n 4 ARG 4 A VAL 5 n 5 VAL 5 A LYS 6 n 6 LYS 6 A ARG 7 n 7 ARG 7 A PRO 8 n 8 PRO 8 A MET 9 n 9 MET 9 A ASN 10 n 10 ASN 10 A ALA 11 n 11 ALA 11 A PHE 12 n 12 PHE 12 A ILE 13 n 13 ILE 13 A VAL 14 n 14 VAL 14 A TRP 15 n 15 TRP 15 A SER 16 n 16 SER 16 A ARG 17 n 17 ARG 17 A ASP 18 n 18 ASP 18 A GLN 19 n 19 GLN 19 A ARG 20 n 20 ARG 20 A ARG 21 n 21 ARG 21 A LYS 22 n 22 LYS 22 A MET 23 n 23 MET 23 A ALA 24 n 24 ALA 24 A LEU 25 n 25 LEU 25 A GLU 26 n 26 GLU 26 A ASN 27 n 27 ASN 27 A PRO 28 n 28 PRO 28 A ARG 29 n 29 ARG 29 A MET 30 n 30 MET 30 A ARG 31 n 31 ARG 31 A ASN 32 n 32 ASN 32 A SER 33 n 33 SER 33 A GLU 34 n 34 GLU 34 A ILE 35 n 35 ILE 35 A SER 36 n 36 SER 36 A LYS 37 n 37 LYS 37 A GLN 38 n 38 GLN 38 A LEU 39 n 39 LEU 39 A GLY 40 n 40 GLY 40 A TYR 41 n 41 TYR 41 A GLN 42 n 42 GLN 42 A TRP 43 n 43 TRP 43 A LYS 44 n 44 LYS 44 A MET 45 n 45 MET 45 A LEU 46 n 46 LEU 46 A THR 47 n 47 THR 47 A GLU 48 n 48 GLU 48 A ALA 49 n 49 ALA 49 A GLU 50 n 50 GLU 50 A LYS 51 n 51 LYS 51 A TRP 52 n 52 TRP 52 A PRO 53 n 53 PRO 53 A PHE 54 n 54 PHE 54 A PHE 55 n 55 PHE 55 A GLN 56 n 56 GLN 56 A GLU 57 n 57 GLU 57 A ALA 58 n 58 ALA 58 A GLN 59 n 59 GLN 59 A LYS 60 n 60 LYS 60 A LEU 61 n 61 LEU 61 A GLN 62 n 62 GLN 62 A ALA 63 n 63 ALA 63 A MET 64 n 64 MET 64 A HIS 65 n 65 HIS 65 A ARG 66 n 66 ARG 66 A GLU 67 n 67 GLU 67 A LYS 68 n 68 LYS 68 A TYR 69 n 69 TYR 69 A PRO 70 n 70 PRO 70 A ASN 71 n 71 ASN 71 A TYR 72 n 72 TYR 72 A LYS 73 n 73 LYS 73 A TYR 74 n 74 TYR 74 A ARG 75 n 75 ARG 75 A PRO 76 n 76 PRO 76 A ARG 77 n 77 ARG 77 A ARG 78 n 78 ARG 78 A LYS 79 n 79 LYS 79 A ALA 80 n 80 ALA 80 A LYS 81 n 81 LYS 81 A MET 82 n 82 MET 82 A LEU 83 n 83 LEU 83 A PRO 84 n 84 PRO 84 A LYS 85 n 85 LYS 85 A author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H SER ARG 16 20 1.50 1 -4.11 0.60 122.90 118.79 C C C C6 C5 C7 DT DT DT 119 119 119 N 1 -4.53 0.60 122.90 118.37 C C C C6 C5 C7 DT DT DT 121 121 121 N 3D Solution NMR Structure of the Wild Type HMG-BOX Domain of the Human Male Sex Determining Factor Sry Complexed to DNA 1 N N 2 N N 3 N N A ASN 10 C ASN 10 HELX_P A ASN 27 C ASN 27 1 1 18 A ARG 31 C ARG 31 HELX_P A LYS 44 C LYS 44 1 2 14 A THR 47 C THR 47 HELX_P A TYR 69 C TYR 69 1 3 23 hydrog WATSON-CRICK B DC 101 A N3 DC 1 1_555 C DG 128 B N1 DG 14 1_555 hydrog WATSON-CRICK B DC 101 A N4 DC 1 1_555 C DG 128 B O6 DG 14 1_555 hydrog WATSON-CRICK B DC 101 A O2 DC 1 1_555 C DG 128 B N2 DG 14 1_555 hydrog WATSON-CRICK B DC 102 A N3 DC 2 1_555 C DG 127 B N1 DG 13 1_555 hydrog WATSON-CRICK B DC 102 A N4 DC 2 1_555 C DG 127 B O6 DG 13 1_555 hydrog WATSON-CRICK B DC 102 A O2 DC 2 1_555 C DG 127 B N2 DG 13 1_555 hydrog WATSON-CRICK B DT 103 A N3 DT 3 1_555 C DA 126 B N1 DA 12 1_555 hydrog WATSON-CRICK B DT 103 A O4 DT 3 1_555 C DA 126 B N6 DA 12 1_555 hydrog WATSON-CRICK B DG 104 A N1 DG 4 1_555 C DC 125 B N3 DC 11 1_555 hydrog WATSON-CRICK B DG 104 A N2 DG 4 1_555 C DC 125 B O2 DC 11 1_555 hydrog WATSON-CRICK B DG 104 A O6 DG 4 1_555 C DC 125 B N4 DC 11 1_555 hydrog WATSON-CRICK B DC 105 A N3 DC 5 1_555 C DG 124 B N1 DG 10 1_555 hydrog WATSON-CRICK B DC 105 A N4 DC 5 1_555 C DG 124 B O6 DG 10 1_555 hydrog WATSON-CRICK B DC 105 A O2 DC 5 1_555 C DG 124 B N2 DG 10 1_555 hydrog WATSON-CRICK B DA 106 A N1 DA 6 1_555 C DT 123 B N3 DT 9 1_555 hydrog WATSON-CRICK B DA 106 A N6 DA 6 1_555 C DT 123 B O4 DT 9 1_555 hydrog WATSON-CRICK B DC 107 A N3 DC 7 1_555 C DG 122 B N1 DG 8 1_555 hydrog WATSON-CRICK B DC 107 A N4 DC 7 1_555 C DG 122 B O6 DG 8 1_555 hydrog WATSON-CRICK B DC 107 A O2 DC 7 1_555 C DG 122 B N2 DG 8 1_555 hydrog WATSON-CRICK B DA 108 A N1 DA 8 1_555 C DT 121 B N3 DT 7 1_555 hydrog WATSON-CRICK B DA 108 A N6 DA 8 1_555 C DT 121 B O4 DT 7 1_555 hydrog WATSON-CRICK B DA 109 A N1 DA 9 1_555 C DT 120 B N3 DT 6 1_555 hydrog WATSON-CRICK B DA 109 A N6 DA 9 1_555 C DT 120 B O4 DT 6 1_555 hydrog WATSON-CRICK B DA 110 A N1 DA 10 1_555 C DT 119 B N3 DT 5 1_555 hydrog WATSON-CRICK B DA 110 A N6 DA 10 1_555 C DT 119 B O4 DT 5 1_555 hydrog WATSON-CRICK B DC 111 A N3 DC 11 1_555 C DG 118 B N1 DG 4 1_555 hydrog WATSON-CRICK B DC 111 A N4 DC 11 1_555 C DG 118 B O6 DG 4 1_555 hydrog WATSON-CRICK B DC 111 A O2 DC 11 1_555 C DG 118 B N2 DG 4 1_555 hydrog WATSON-CRICK B DA 112 A N1 DA 12 1_555 C DT 117 B N3 DT 3 1_555 hydrog WATSON-CRICK B DA 112 A N6 DA 12 1_555 C DT 117 B O4 DT 3 1_555 hydrog WATSON-CRICK B DC 113 A N3 DC 13 1_555 C DG 116 B N1 DG 2 1_555 hydrog WATSON-CRICK B DC 113 A N4 DC 13 1_555 C DG 116 B O6 DG 2 1_555 hydrog WATSON-CRICK B DC 113 A O2 DC 13 1_555 C DG 116 B N2 DG 2 1_555 hydrog WATSON-CRICK B DC 114 A N3 DC 14 1_555 C DG 115 B N1 DG 1 1_555 hydrog WATSON-CRICK B DC 114 A N4 DC 14 1_555 C DG 115 B O6 DG 1 1_555 hydrog WATSON-CRICK B DC 114 A O2 DC 14 1_555 C DG 115 B N2 DG 1 1_555 TRANSCRIPTION/DNA MALE SEX DETERMINING FACTOR, SRY, SEX-REVERSAL MUTATION, DNA BENDING MUTANT, DIPOLAR COUPLINGS, MULTIDIMENSIONAL NMR, TRANSCRIPTION-DNA COMPLEX SRY_HUMAN UNP 3 57 Q05066 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAK MLPK 1J46 PDB 1 1J46 1J46 PDB 2 1J46 57 140 1J46 2 85 Q05066 A 1 2 85 101 114 1J46 101 114 1J46 B 2 1 14 115 128 1J46 115 128 1J46 C 3 1 14 1 cloning artifact MET 1 1J46 A Q05066 UNP 1