1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Munoz, A. Forsterling, F.H. Shaw III, C.F. Petering, D.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cd 2 112.411 CADMIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N O N 21 N O N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N CD N 31 N N N 32 R C N 33 N C N 34 N O N 35 N C N 36 N S N 37 N O N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N N N 46 S C N 47 N C N 48 N O N 49 N C N 50 N C N 51 N C N 52 N O N 53 N O N 54 N O N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N N N 65 N C N 66 N C N 67 N O N 68 N O N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N C N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N N N 100 S C N 101 N C N 102 N O N 103 N C N 104 N C N 105 N C N 106 N O N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N N N 117 S C N 118 N C N 119 N O N 120 N C N 121 N O N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 S C N 132 N C N 133 N O N 134 R C N 135 N O N 136 N C N 137 N O N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N doub N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N doub N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N doub N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing GW J.Biol.Inorg.Chem. JJBCFA 2154 0949-8257 7 713 724 10.1007/s00775-002-0345-3 12203008 Structure of the (113)Cd(3)beta domains from Homarus americanus metallothionein-1: hydrogen bonding and solvent accessibility of sulfur atoms 2002 10.2210/pdb1j5l/pdb pdb_00001j5l 10.13018/BMR4754 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 3133.726 METALLOTHIONEIN-1 BETA_C DOMAIN (RESIDUES 29-58) 1 syn polymer 112.411 CADMIUM ION 3 syn non-polymer CUMT-1 no no PCEKCTSGCKCPSKDECAKTCSKPCSCCPT PCEKCTSGCKCPSKDECAKTCSKPCSCCPT A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n atom_site database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site database_2 repository Initial release Version format compliance Version format compliance Atomic model Data collection Database references Derived calculations Other Data collection Database references Derived calculations Database references 1 0 2002-05-22 1 1 2008-04-26 1 2 2011-07-13 2 0 2020-02-05 2 1 2023-12-27 2 2 2024-05-08 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.label_atom_id _pdbx_database_status.status_code_cs _pdbx_nmr_software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _database_2.pdbx_DOI 2002-05-22 SPRSDE contains 1H chemical shifts and 3JHNHA and 3JHAHB coupling constants contains the minimized average structure of the beta_N domain of this protein RCSB Y RCSB 2002-05-16 REL REL REL CD CADMIUM ION The peptide was chemically synthesized. The sequence of the peptide is naturally found in Homarus americanus (American lobster). sample This structure was determined using standard 2D homonuclear techniques 1 DQF-COSY 2D NOESY 2D TOCSY 2D 113Cd HSQC-TOCSY 2D NOESY DQF-COSY 5mM Tris 7.4 ambient 298 K The structure is based on 228 NOE based distance restraints, 20 dihedral angle restraints and 33 metal cluster restraints derived from 113Cd-HSQC-TOCSY experiments. ab initio simulated annealing 2-3mM 113Cd3-MT-beta_C, 5mM d-Tris buffer 90% H2O/10% D2O 2-3mM 113Cd3-MT-beta_C, 5mM d-Tris buffer 100% D2O Bruker Instruments collection XwinNMR 2.5 Bruker Instruments processing XwinNMR 2.5 MSI data analysis Felix 2000 Axel Brunger structure solution X-PLOR 3.851 Reto Koradi data analysis MOLMOL 2k.1 Axel Brunger refinement X-PLOR 3.851 500 Bruker DRX 300 Bruker DPX CD 32 2 CD CD 32 A CD 33 2 CD CD 33 A CD 34 2 CD CD 34 A PRO 2 n 1 PRO 2 A CYS 3 n 2 CYS 3 A GLU 4 n 3 GLU 4 A LYS 5 n 4 LYS 5 A CYS 6 n 5 CYS 6 A THR 7 n 6 THR 7 A SER 8 n 7 SER 8 A GLY 9 n 8 GLY 9 A CYS 10 n 9 CYS 10 A LYS 11 n 10 LYS 11 A CYS 12 n 11 CYS 12 A PRO 13 n 12 PRO 13 A SER 14 n 13 SER 14 A LYS 15 n 14 LYS 15 A ASP 16 n 15 ASP 16 A GLU 17 n 16 GLU 17 A CYS 18 n 17 CYS 18 A ALA 19 n 18 ALA 19 A LYS 20 n 19 LYS 20 A THR 21 n 20 THR 21 A CYS 22 n 21 CYS 22 A SER 23 n 22 SER 23 A LYS 24 n 23 LYS 24 A PRO 25 n 24 PRO 25 A CYS 26 n 25 CYS 26 A SER 27 n 26 SER 27 A CYS 28 n 27 CYS 28 A CYS 29 n 28 CYS 29 A PRO 30 n 29 PRO 30 A THR 31 n 30 THR 31 A author_defined_assembly 1 monomeric A CYS 3 A SG CYS 2 1_555 A CD 34 D CD CD 1_555 A CYS 6 A SG CYS 5 1_555 108.4 A CYS 3 A SG CYS 2 1_555 A CD 34 D CD CD 1_555 A CYS 22 A SG CYS 21 1_555 110.2 A CYS 6 A SG CYS 5 1_555 A CD 34 D CD CD 1_555 A CYS 22 A SG CYS 21 1_555 104.9 A CYS 3 A SG CYS 2 1_555 A CD 34 D CD CD 1_555 A CYS 26 A SG CYS 25 1_555 108.2 A CYS 6 A SG CYS 5 1_555 A CD 34 D CD CD 1_555 A CYS 26 A SG CYS 25 1_555 114.6 A CYS 22 A SG CYS 21 1_555 A CD 34 D CD CD 1_555 A CYS 26 A SG CYS 25 1_555 110.5 A CYS 6 A SG CYS 5 1_555 A CD 33 C CD CD 1_555 A CYS 10 A SG CYS 9 1_555 107.6 A CYS 6 A SG CYS 5 1_555 A CD 33 C CD CD 1_555 A CYS 28 A SG CYS 27 1_555 106.7 A CYS 10 A SG CYS 9 1_555 A CD 33 C CD CD 1_555 A CYS 28 A SG CYS 27 1_555 111.5 A CYS 6 A SG CYS 5 1_555 A CD 33 C CD CD 1_555 A CYS 29 A SG CYS 28 1_555 108.7 A CYS 10 A SG CYS 9 1_555 A CD 33 C CD CD 1_555 A CYS 29 A SG CYS 28 1_555 112.7 A CYS 28 A SG CYS 27 1_555 A CD 33 C CD CD 1_555 A CYS 29 A SG CYS 28 1_555 109.5 A CYS 6 A SG CYS 5 1_555 A CD 33 C CD CD 1_555 A CYS 29 A N CYS 28 1_555 169.8 A CYS 10 A SG CYS 9 1_555 A CD 33 C CD CD 1_555 A CYS 29 A N CYS 28 1_555 73.6 A CYS 28 A SG CYS 27 1_555 A CD 33 C CD CD 1_555 A CYS 29 A N CYS 28 1_555 81.8 A CYS 29 A SG CYS 28 1_555 A CD 33 C CD CD 1_555 A CYS 29 A N CYS 28 1_555 62.3 A CYS 12 A SG CYS 11 1_555 A CD 32 B CD CD 1_555 A CYS 18 A SG CYS 17 1_555 110.4 A CYS 12 A SG CYS 11 1_555 A CD 32 B CD CD 1_555 A CYS 22 A SG CYS 21 1_555 108.4 A CYS 18 A SG CYS 17 1_555 A CD 32 B CD CD 1_555 A CYS 22 A SG CYS 21 1_555 109.0 A CYS 12 A SG CYS 11 1_555 A CD 32 B CD CD 1_555 A CYS 29 A SG CYS 28 1_555 107.7 A CYS 18 A SG CYS 17 1_555 A CD 32 B CD CD 1_555 A CYS 29 A SG CYS 28 1_555 109.4 A CYS 22 A SG CYS 21 1_555 A CD 32 B CD CD 1_555 A CYS 29 A SG CYS 28 1_555 111.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CYS 3 -80.59 -146.15 1 A LYS 5 -94.76 42.72 1 A SER 8 173.39 -86.23 1 A CYS 12 32.33 93.27 1 A SER 14 -153.94 -58.57 1 A LYS 15 -164.01 -44.02 1 A CYS 18 -90.21 -74.42 1 A SER 23 -78.46 49.85 1 A LYS 24 176.18 179.93 1 A CYS 26 -42.15 107.46 1 A SER 27 -60.20 72.50 1 A CYS 28 178.55 -24.95 1 A CYS 29 -72.95 -160.66 NMR STRUCTURE OF THE ISOLATED BETA_C DOMAIN OF LOBSTER METALLOTHIONEIN-1 1 N N 2 N N 2 N N 2 N N A CYS 3 A CYS 2 HELX_P A THR 7 A THR 6 5 1 5 A GLU 17 A GLU 16 HELX_P A CYS 22 A CYS 21 1 2 6 metalc 2.547 A CYS 3 A SG CYS 2 1_555 A CD 34 D CD CD 1_555 metalc 2.545 A CYS 6 A SG CYS 5 1_555 A CD 33 C CD CD 1_555 metalc 2.542 A CYS 6 A SG CYS 5 1_555 A CD 34 D CD CD 1_555 metalc 2.548 A CYS 10 A SG CYS 9 1_555 A CD 33 C CD CD 1_555 metalc 2.546 A CYS 12 A SG CYS 11 1_555 A CD 32 B CD CD 1_555 metalc 2.543 A CYS 18 A SG CYS 17 1_555 A CD 32 B CD CD 1_555 metalc 2.546 A CYS 22 A SG CYS 21 1_555 A CD 32 B CD CD 1_555 metalc 2.537 A CYS 22 A SG CYS 21 1_555 A CD 34 D CD CD 1_555 metalc 2.566 A CYS 26 A SG CYS 25 1_555 A CD 34 D CD CD 1_555 metalc 2.547 A CYS 28 A SG CYS 27 1_555 A CD 33 C CD CD 1_555 metalc 2.542 A CYS 29 A SG CYS 28 1_555 A CD 32 B CD CD 1_555 metalc 2.565 A CYS 29 A SG CYS 28 1_555 A CD 33 C CD CD 1_555 metalc 2.888 A CYS 29 A N CYS 28 1_555 A CD 33 C CD CD 1_555 METAL BINDING PROTEIN beta-domain, Metalloprotein, Cadmium-sulfur-cluster, METAL BINDING PROTEIN MT1_HOMAM UNP 1 29 P29499 PCEKCTSGCKCPSKDECAKTCSKPCSCCPT 29 58 1J5L 2 31 P29499 A 1 1 30 BINDING SITE FOR RESIDUE CD A 32 A CD 32 Software 4 BINDING SITE FOR RESIDUE CD A 33 A CD 33 Software 5 BINDING SITE FOR RESIDUE CD A 34 A CD 34 Software 4 A CYS 12 A CYS 11 4 1_555 A CYS 18 A CYS 17 4 1_555 A CYS 22 A CYS 21 4 1_555 A CYS 29 A CYS 28 4 1_555 A CYS 6 A CYS 5 5 1_555 A CYS 10 A CYS 9 5 1_555 A CYS 26 A CYS 25 5 1_555 A CYS 28 A CYS 27 5 1_555 A CYS 29 A CYS 28 5 1_555 A CYS 3 A CYS 2 4 1_555 A CYS 6 A CYS 5 4 1_555 A CYS 22 A CYS 21 4 1_555 A CYS 26 A CYS 25 4 1_555