1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Arnesano, F. Banci, L. Barker, P.D. Bertini, I. Rosato, A. Su, X.C. Viezzoli, M.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 41 13587 13594 10.1021/bi026362w 12427019 Solution structure and characterization of the heme chaperone CcmE 2002 10.2210/pdb1j6q/pdb pdb_00001j6q 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 14714.397 cytochrome c maturation protein E water soluble domain of CcmE 1 man polymer no no FAADLNSNLNLFYTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLPDLFR EGQGIVAQGVLGEDGKLAATEVLAKHDENYMPPEVAEAMGQKHEKLDYSQQKSATQ FAADLNSNLNLFYTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLPDLFR EGQGIVAQGVLGEDGKLAATEVLAKHDENYMPPEVAEAMGQKHEKLDYSQQKSATQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Shewanella Escherichia sample ccmE 24 Shewanella putrefaciens 562 Escherichia coli BL21 Gold(DE3) plasmid pPB10 database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-12-25 1 1 2008-04-28 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details RCSB Y RCSB 2002-04-30 REL REL The structure was determined using triple-resonance NMR spectroscopy on 13C and 15N double labeled apoCcmE. 1 2D NOESY 2D TOCSY 3D_13C-separated_NOESY 3D_15N-separated_NOESY HNHA HNCO HNHB CBCANH CC(CO)NH CBCA(CO)NH 20 mM phosphate 7.0 1 atm 298 K 1866 meaningful NOEs and 89 dihedral angle constraints. simulated annealing, torsion angle dyanamics, restrained energy minimization 1 minimized average structure 2.0 mM apoCcmE, 20 mM phosphate, 90% H2O, 10% D2O 90% H2O/10% D2O Bruker processing XwinNMR 2.6 Xia, Bartels data analysis XEASY 1.3 Gunter, Mumenthaler, Wuthrich structure solution DYANA 1.5 Borgias, Thomas, James iterative matrix relaxation CORMA Pearlman, Case, Caldwell, Ross, Cheatham, Ferguson, Seibel, Singh, Weiner, Kollman refinement Amber 5.0 700 Bruker AVANCE n 1 26 A n 2 27 A n 3 28 A n 4 29 A n 5 30 A n 6 31 A SER 32 n 7 SER 32 A ASN 33 n 8 ASN 33 A LEU 34 n 9 LEU 34 A ASN 35 n 10 ASN 35 A LEU 36 n 11 LEU 36 A PHE 37 n 12 PHE 37 A TYR 38 n 13 TYR 38 A THR 39 n 14 THR 39 A PRO 40 n 15 PRO 40 A SER 41 n 16 SER 41 A GLU 42 n 17 GLU 42 A ILE 43 n 18 ILE 43 A VAL 44 n 19 VAL 44 A ASN 45 n 20 ASN 45 A GLY 46 n 21 GLY 46 A LYS 47 n 22 LYS 47 A THR 48 n 23 THR 48 A ASP 49 n 24 ASP 49 A THR 50 n 25 THR 50 A GLY 51 n 26 GLY 51 A VAL 52 n 27 VAL 52 A LYS 53 n 28 LYS 53 A PRO 54 n 29 PRO 54 A GLU 55 n 30 GLU 55 A ALA 56 n 31 ALA 56 A GLY 57 n 32 GLY 57 A GLN 58 n 33 GLN 58 A ARG 59 n 34 ARG 59 A ILE 60 n 35 ILE 60 A ARG 61 n 36 ARG 61 A VAL 62 n 37 VAL 62 A GLY 63 n 38 GLY 63 A GLY 64 n 39 GLY 64 A MET 65 n 40 MET 65 A VAL 66 n 41 VAL 66 A THR 67 n 42 THR 67 A VAL 68 n 43 VAL 68 A GLY 69 n 44 GLY 69 A SER 70 n 45 SER 70 A MET 71 n 46 MET 71 A VAL 72 n 47 VAL 72 A ARG 73 n 48 ARG 73 A ASP 74 n 49 ASP 74 A PRO 75 n 50 PRO 75 A ASN 76 n 51 ASN 76 A SER 77 n 52 SER 77 A LEU 78 n 53 LEU 78 A HIS 79 n 54 HIS 79 A VAL 80 n 55 VAL 80 A GLN 81 n 56 GLN 81 A PHE 82 n 57 PHE 82 A ALA 83 n 58 ALA 83 A VAL 84 n 59 VAL 84 A HIS 85 n 60 HIS 85 A ASP 86 n 61 ASP 86 A SER 87 n 62 SER 87 A LEU 88 n 63 LEU 88 A GLY 89 n 64 GLY 89 A GLY 90 n 65 GLY 90 A GLU 91 n 66 GLU 91 A ILE 92 n 67 ILE 92 A LEU 93 n 68 LEU 93 A VAL 94 n 69 VAL 94 A THR 95 n 70 THR 95 A TYR 96 n 71 TYR 96 A ASP 97 n 72 ASP 97 A ASP 98 n 73 ASP 98 A LEU 99 n 74 LEU 99 A LEU 100 n 75 LEU 100 A PRO 101 n 76 PRO 101 A ASP 102 n 77 ASP 102 A LEU 103 n 78 LEU 103 A PHE 104 n 79 PHE 104 A ARG 105 n 80 ARG 105 A GLU 106 n 81 GLU 106 A GLY 107 n 82 GLY 107 A GLN 108 n 83 GLN 108 A GLY 109 n 84 GLY 109 A ILE 110 n 85 ILE 110 A VAL 111 n 86 VAL 111 A ALA 112 n 87 ALA 112 A GLN 113 n 88 GLN 113 A GLY 114 n 89 GLY 114 A VAL 115 n 90 VAL 115 A LEU 116 n 91 LEU 116 A GLY 117 n 92 GLY 117 A GLU 118 n 93 GLU 118 A ASP 119 n 94 ASP 119 A GLY 120 n 95 GLY 120 A LYS 121 n 96 LYS 121 A LEU 122 n 97 LEU 122 A ALA 123 n 98 ALA 123 A ALA 124 n 99 ALA 124 A THR 125 n 100 THR 125 A GLU 126 n 101 GLU 126 A VAL 127 n 102 VAL 127 A LEU 128 n 103 LEU 128 A ALA 129 n 104 ALA 129 A LYS 130 n 105 LYS 130 A HIS 131 n 106 HIS 131 A n 107 132 A n 108 133 A n 109 134 A n 110 135 A n 111 136 A n 112 137 A n 113 138 A n 114 139 A n 115 140 A n 116 141 A n 117 142 A n 118 143 A n 119 144 A n 120 145 A n 121 146 A n 122 147 A n 123 148 A n 124 149 A n 125 150 A n 126 151 A n 127 152 A n 128 153 A n 129 154 A n 130 155 A n 131 156 A n 132 157 A n 133 158 A n 134 159 A n 135 160 A n 136 161 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 38 A N TYR 13 A O ARG 61 A O ARG 36 A O MET 65 A O MET 40 A N HIS 85 A N HIS 60 A N GLN 81 A N GLN 56 A O VAL 72 A O VAL 47 A O VAL 72 A O VAL 47 A N GLN 81 A N GLN 56 A O VAL 84 A O VAL 59 A N ILE 92 A N ILE 67 A N THR 95 A N THR 70 A O LEU 122 A O LEU 97 A N LEU 128 A N LEU 103 A O VAL 111 A O VAL 86 A N GLY 114 A N GLY 89 A O ILE 60 A O ILE 35 1 A PHE 26 A PHE 1 1 Y 1 A ALA 27 A ALA 2 1 Y 1 A ALA 28 A ALA 3 1 Y 1 A ASP 29 A ASP 4 1 Y 1 A LEU 30 A LEU 5 1 Y 1 A ASN 31 A ASN 6 1 Y 1 A ASP 132 A ASP 107 1 Y 1 A GLU 133 A GLU 108 1 Y 1 A ASN 134 A ASN 109 1 Y 1 A TYR 135 A TYR 110 1 Y 1 A MET 136 A MET 111 1 Y 1 A PRO 137 A PRO 112 1 Y 1 A PRO 138 A PRO 113 1 Y 1 A GLU 139 A GLU 114 1 Y 1 A VAL 140 A VAL 115 1 Y 1 A ALA 141 A ALA 116 1 Y 1 A GLU 142 A GLU 117 1 Y 1 A ALA 143 A ALA 118 1 Y 1 A MET 144 A MET 119 1 Y 1 A GLY 145 A GLY 120 1 Y 1 A GLN 146 A GLN 121 1 Y 1 A LYS 147 A LYS 122 1 Y 1 A HIS 148 A HIS 123 1 Y 1 A GLU 149 A GLU 124 1 Y 1 A LYS 150 A LYS 125 1 Y 1 A LEU 151 A LEU 126 1 Y 1 A ASP 152 A ASP 127 1 Y 1 A TYR 153 A TYR 128 1 Y 1 A SER 154 A SER 129 1 Y 1 A GLN 155 A GLN 130 1 Y 1 A GLN 156 A GLN 131 1 Y 1 A LYS 157 A LYS 132 1 Y 1 A SER 158 A SER 133 1 Y 1 A ALA 159 A ALA 134 1 Y 1 A THR 160 A THR 135 1 Y 1 A GLN 161 A GLN 136 1 Y 1 A PHE 104 0.086 SIDE CHAIN 1 -3.08 0.50 120.30 117.22 A A A NE CZ NH2 ARG ARG ARG 61 61 61 N 1 A ILE 43 -79.44 42.13 1 A VAL 44 -141.86 -55.16 1 A LYS 47 -149.52 -107.47 1 A LYS 53 -102.94 -74.80 1 A LEU 78 -154.88 7.00 1 A PRO 101 -64.37 -92.44 1 A ASP 102 -77.93 43.19 1 A LEU 103 50.23 13.05 1 A PHE 104 59.52 79.44 1 A ASP 119 13.52 67.29 1 A THR 125 -147.35 -40.32 minimized average Solution structure and characterization of the heme chaperone CcmE 1 N N CHAPERONE all-beta protein, heme delivery, cytochrome c maturation, OB-(oligonucleotide binding)fold, CHAPERONE O52690_SHEPU UNP 1 30 O52690 LNSNLNLFYTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLPDLFREGQG IVAQGVLGEDGKLAATEVLAKHDENYMPPEVAEAMGQKHEKLDYSQQKSATQ 30 161 1J6Q 30 161 O52690 A 1 5 136 1 cloning artifact PHE 26 1J6Q A O52690 UNP 1 1 cloning artifact ALA 27 1J6Q A O52690 UNP 2 1 cloning artifact ALA 28 1J6Q A O52690 UNP 3 1 cloning artifact ASP 29 1J6Q A O52690 UNP 4 9 parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A PHE 37 A PHE 12 A TYR 38 A TYR 13 A ARG 59 A ARG 34 A VAL 66 A VAL 41 A VAL 80 A VAL 55 A HIS 85 A HIS 60 A VAL 72 A VAL 47 A ARG 73 A ARG 48 A VAL 80 A VAL 55 A HIS 85 A HIS 60 A ILE 92 A ILE 67 A TYR 96 A TYR 71 A LEU 122 A LEU 97 A LEU 128 A LEU 103 A GLY 109 A GLY 84 A LEU 116 A LEU 91 A ARG 59 A ARG 34 A VAL 66 A VAL 41 1 P 1